1. A meta-analysis of genome-wide association studies of growth differentiation factor-15 concentration in blood
- Author
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Jiang, J, Thalamuthu, A, Ho, JE, Mahajan, A, Ek, WE, Brown, DA, Breit, SN, Wang, TJ, Gyllensten, U, Chen, MH, Enroth, S, Januzzi, JL, Lind, L, Armstrong, NJ, Kwok, JB, Schofield, PR, Wen, W, Trollor, JN, Johansson, Å, Morris, AP, Vasan, RS, Sachdev, PS, Mather, KA, Jiang, J, Thalamuthu, A, Ho, JE, Mahajan, A, Ek, WE, Brown, DA, Breit, SN, Wang, TJ, Gyllensten, U, Chen, MH, Enroth, S, Januzzi, JL, Lind, L, Armstrong, NJ, Kwok, JB, Schofield, PR, Wen, W, Trollor, JN, Johansson, Å, Morris, AP, Vasan, RS, Sachdev, PS, and Mather, KA
- Abstract
Blood levels of growth differentiation factor-15 (GDF-15), also known as macrophage inhibitory cytokine-1 (MIC-1), have been associated with various pathological processes and diseases, including cardiovascular disease and cancer. Prior studies suggest genetic factors play a role in regulating blood MIC-1/GDF-15 concentration. In the current study, we conducted the largest genome-wide association study (GWAS) to date using a sample of ~5,400 community-based Caucasian participants, to determine the genetic variants associated with MIC-1/GDF-15 blood concentration. Conditional and joint (COJO), gene-based association, and gene-set enrichment analyses were also carried out to identify novel loci, genes, and pathways. Consistent with prior results, a locus on chromosome 19, which includes nine single nucleotide polymorphisms (SNPs) (top SNP, rs888663, p = 1.690 × 10-35), was significantly associated with blood MIC-1/GDF-15 concentration, and explained 21.47% of its variance. COJO analysis showed evidence for two independent signals within this locus. Gene-based analysis confirmed the chromosome 19 locus association and in addition, a putative locus on chromosome 1. Gene-set enrichment analyses showed that the"COPI-mediated anterograde transport" gene-set was associated with MIC-1/GDF15 blood concentration with marginal significance after FDR correction (p = 0.067). In conclusion, a locus on chromosome 19 was associated with MIC-1/GDF-15 blood concentration with genome-wide significance, with evidence for a new locus (chromosome 1). Future studies using independent cohorts are needed to confirm the observed associations especially for the chromosomes 1 locus, and to further investigate and identify the causal SNPs that contribute to MIC-1/GDF-15 levels.
- Published
- 2018