28 results on '"Azole"'
Search Results
2. Role of the KDAC HosA in virulence and azole resistance of 'Aspergillus fumigatus'
- Author
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Orou, Noel and Orou, Noel
- Abstract
Aspergillus fumigatus ist ein häufiger Erreger bei immungeschwächten Patienten. Da die Resistenz von Pilzen gegen die üblicherweise verabreichten Azole rapide ansteigt, wird die Entwicklung neuer Therapieschemata erforderlich. Ein vielversprechendes neues antimykotisches Target sind Lysin-Deacetylasen (KDACs), Transkriptionsregulatoren, die viele Virulenz- und Resistenzfaktoren in Pilzen beeinflussen. Diese Studie konzentriert sich auf die KDAC HosA der Klasse 1 und insbesondere auf ihren möglichen Einfluss auf die Azolresistenz von A. fumigatus. Zu diesem Zweck wurde ein A. fumigatus-Wildtypstamm mit einer hosA-Deletionsmutante und einer im Rahmen dieser Arbeit generierten komplementierten Mutante verglichen. Wachstumsanalysen in Schüttelkultur mit und ohne Posaconazol, MIC-Assays mit drei Azolderivaten und Checkerboard-Assays mit Voriconazol und dem KDAC-Inhibitor Trichostatin A legten nahe, dass HosA-Aktivität die Azolsensitivität bei axenischem Wachstum fördert. Transkriptionsanalysen wichtiger Azolresistenzfaktoren wie cyp51A, mdr1, mdrA und abcC deuteten jedoch eindeutig auf eine HosA-induzierte Azolresistenz hin, da diese Faktoren unter hosA-Deletion signifikant herunterreguliert wurden. Folglich müssen andere dominante HosA-abhängige Akteure für das beobachtete widersprüchliche Resistenzverhalten in vitro verantwortlich sein. In dieser Hinsicht könnte die Produktion bestimmter Sekundärmetaboliten, darunter Mykotoxine, über die bei mehreren verwandten Aspergillus-Arten eine Hochregulierung durch HosA beschrieben wurde, für die Diskrepanzen zwischen den Transkriptionsanalysen und dem Wachstumsverhalten der Stämme verantwortlich sein. Die Tatsache, dass mehrere pflanzenpathogene Pilze mit Deletion des hosA-Orthologen eine abgeschwächte Virulenz zeigten, deutet weiter auf HosA-induzierte Pilzvirulenzfaktoren wie Mykotoxine hin. Dieses Ergebnis spricht zusammen mit unseren Daten zur verminderten Expression von Azolresistenzfaktoren unter HosA-Inaktivierung für di, Aspergillus fumigatus is a common pathogen in immunocompromised patients. Since fungal resistance to the commonly administered azoles is increasing rapidly, development of new therapy regimens becomes necessary. A promising novel antifungal target are lysine deacetylases (KDACs), transcriptional regulators that affect many virulence and resistance factors in fungi. This study is focusing on the class 1 KDAC HosA and particularly its potential influence on azole resistance of A. fumigatus. To this end, an A. fumigatus wild type strain was compared with a hosA deletion mutant and a complemented mutant generated within this work. Growth analyses in shaking culture with and without posaconazole, MIC assays with three azole derivatives, and checkerboard assays with voriconazole and the KDAC inhibitor trichostatin A suggested that HosA activity promotes azole sensitivity under axenic growth. Transcriptional analyses of important azole resistance factors such as cyp51A, mdr1, mdrA and abcC, however, clearly indicated HosA-induced azole resistance, as these factors were significantly decreased under hosA deletion. Consequently, other dominant HosA-dependent players must be responsible for the observed contradictory resistance behavior in vitro. In this regard, production of certain secondary metabolites including mycotoxins, described to be upregulated by HosA in several related Aspergillus species, might be responsible for the discrepancies between the transcriptional analyses and the growth behavior of the strains. The fact that several plant pathogenic fungi with deletion of the hosA orthologue displayed attenuated virulence further points to HosA-induced fungal virulence factors such as mycotoxins. This result together with our data on decreased expression of azole resistance factors under HosA inactivation argue for the use of KDACIs, alone or in combination with azole derivatives, in future therapeutic approaches against invasive aspergillosis. A successful use of KDA, submitted by Noel Orou, MSc, Masterarbeit Universität Innsbruck 2023, Masterarbeit Medizinische Universität Innsbruck 2023
- Published
- 2023
3. Crop protection practices and risks associated with human fungal infectious diseases: A One Health perspective
- Author
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Ratnadass, Alain, Sester, Mathilde, Ratnadass, Alain, and Sester, Mathilde
- Abstract
We review interactions between crop protection practices (developed to control plant pathogens and invertebrate pests) and human fungal infectious diseases. Unlike viral, bacterial and parasitic infections, fungal infections in humans are usually only superficial in healthy individuals, but can become invasive and pose serious risks to immunosuppressed individuals. Although their global impact is less than that of other infectious diseases, human fungal infections still pose serious public health issues. For instance, the use of synthetic agricultural fungicides, particularly the azole class, under conventional intensive, or efficiency improvement-based crop protection practices, is at risk as far as antimicrobial resistance is concerned, due to cases of cross-resistance to clinical azoles used to treat pulmonary aspergillosis, candidiasis and cryptococcocis. In this respect, the One Health approach, originally designed for other types of human pathogens, looks relevant for human pathogenic fungi. Additionally, some entomopathogenic fungi used as biocontrol products against crop pests in a substitution-based approach, may be potentially pathogenic to humans. Very few examples of redesign-based practices (i.e. Agroecological Crop Protection) emerged from our analysis on human fungal diseases. However, discontinuing agricultural azole fungicides (as practiced on organic farms, and which may to some extent be related to the redesign strategy) appears to be the best way to reduce selection pressure and hence the level of azole-resistant human pathogenic fungal strains in the environment.
- Published
- 2023
4. Pharmacokinetics of isavuconazole in healthy cats after oral and intravenous administration.
- Author
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Woerde, Dennis J, Woerde, Dennis J, Wittenburg, Luke A, Dear, Jonathan D, Woerde, Dennis J, Woerde, Dennis J, Wittenburg, Luke A, and Dear, Jonathan D
- Abstract
BackgroundIsavuconazole is a triazole antifungal drug that has shown good efficacy in human patients. Absorption and pharmacokinetics have not been evaluated in cats.ObjectivesTo determine the pharmacokinetics of isavuconazole in cats given a single IV or PO dose.AnimalsEight healthy, adult research cats.MethodsFour cats received 100 mg capsules of isavuconazole PO. Four cats received 5 mg/kg isavuconazole solution IV. Serum was collected at predetermined intervals for analysis using ultra-high performance liquid chromatography-tandem mass spectrometry. Data were analyzed using a 2-compartment uniform weighting pharmacokinetic analysis with lag time for PO administration and a 2 compartment, 1/y2 weighting for IV administration. Predicted 24 and 48-hour dosing intervals of 100 mg isavuconazole administered PO were modeled and in vitro plasma protein binding was assessed.ResultsBoth PO and IV drug administration resulted in high serum concentrations. Intravenous and PO formulations of isavuconazole appear to be able to be used interchangeably. Peak serum isavuconazole concentrations occurred 5 ± 3.8 hours after PO administration with an elimination rate half-life of 66.2 ± 55.3 hours. Intersubject variability was apparent in both the PO and IV groups. Two cats vomited 6 to 8 hours after PO administration. No adverse effects were observed in the IV group. Oral bioavailability was estimated to be approximately 88%. Serum protein binding was calculated to be approximately 99.0% ± 0.03%.Conclusions and clinical importanceIsavuconazole might prove to be useful in cats with fungal disease given its favorable pharmacokinetics. Additional studies on safety, efficacy, and tolerability of long-term isavuconazole use are needed.
- Published
- 2022
5. Pharmacokinetics of isavuconazole in healthy cats after oral and intravenous administration.
- Author
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Woerde, Dennis J, Woerde, Dennis J, Wittenburg, Luke A, Dear, Jonathan D, Woerde, Dennis J, Woerde, Dennis J, Wittenburg, Luke A, and Dear, Jonathan D
- Abstract
BackgroundIsavuconazole is a triazole antifungal drug that has shown good efficacy in human patients. Absorption and pharmacokinetics have not been evaluated in cats.ObjectivesTo determine the pharmacokinetics of isavuconazole in cats given a single IV or PO dose.AnimalsEight healthy, adult research cats.MethodsFour cats received 100 mg capsules of isavuconazole PO. Four cats received 5 mg/kg isavuconazole solution IV. Serum was collected at predetermined intervals for analysis using ultra-high performance liquid chromatography-tandem mass spectrometry. Data were analyzed using a 2-compartment uniform weighting pharmacokinetic analysis with lag time for PO administration and a 2 compartment, 1/y2 weighting for IV administration. Predicted 24 and 48-hour dosing intervals of 100 mg isavuconazole administered PO were modeled and in vitro plasma protein binding was assessed.ResultsBoth PO and IV drug administration resulted in high serum concentrations. Intravenous and PO formulations of isavuconazole appear to be able to be used interchangeably. Peak serum isavuconazole concentrations occurred 5 ± 3.8 hours after PO administration with an elimination rate half-life of 66.2 ± 55.3 hours. Intersubject variability was apparent in both the PO and IV groups. Two cats vomited 6 to 8 hours after PO administration. No adverse effects were observed in the IV group. Oral bioavailability was estimated to be approximately 88%. Serum protein binding was calculated to be approximately 99.0% ± 0.03%.Conclusions and clinical importanceIsavuconazole might prove to be useful in cats with fungal disease given its favorable pharmacokinetics. Additional studies on safety, efficacy, and tolerability of long-term isavuconazole use are needed.
- Published
- 2022
6. Novel Azoles as Antiparasitic Remedies against Brain-Eating Amoebae
- Author
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Anwar, Ayaz, Mungroo, Mohammad Ridwane, Khan, Simal, Fatima, Itrat, Rafique, Rafaila, Khan, Khalid Mohammed, Siddiqui, Ruqaiyyah, Khan, Naveed, Anwar, Ayaz, Mungroo, Mohammad Ridwane, Khan, Simal, Fatima, Itrat, Rafique, Rafaila, Khan, Khalid Mohammed, Siddiqui, Ruqaiyyah, and Khan, Naveed
- Abstract
Balamuthia mandrillaris and Naegleria fowleri are opportunistic protozoan pathogens capable of producing infection of the central nervous system with more than 95% mortality rate. Previously, we have synthesized several compounds with antiamoebic properties; however, synthesis of compounds that are analogues of clinically used drugs is a highly desirable approach that can lead to effective drug development against these devastating infections. In this regard, compounds belonging to the azole class possess wide range of antimicrobial properties and used clinically. In this study, six novel benzimidazole, indazole, and tetrazole derivatives were synthesized and tested against brain-eating amoebae. These compounds were tested for their amoebicidal and static properties against N. fowleri and B. mandrillaris. Furthermore, the compounds were conjugated with silver nanoparticles and characterized. The synthetic heterocyclic compounds showed up to 72% and 65% amoebicidal activities against N. fowleri and B. mandrillaris respectively, while expressing up to 75% and 70% amoebistatic activities, respectively. Following conjugation with silver nanoparticles, amoebicidal activities of the drugs increased by up to 46 and 36% versus B. mandrillaris and N. fowleri. Minimal effects were observed when the compounds were evaluated against human cells using cytotoxicity assays. In summary, azole compounds exhibited potent activity against N. fowleri and B. mandrillaris. Moreover, conjugation of the azole compounds with silver nanoparticles further augmented the capabilities of the compounds against amoebae., Sunway University, Pakistan Academy of Sciences
- Published
- 2021
7. The Environmental Spread of Aspergillus terreus in Tyrol, Austria
- Author
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Dietl, Anna-Maria, Vahedi-Shahandashti, Roya, Kandelbauer, Carmen, Kraak, Bart, Lackner, Michaela, Houbraken, Jos, Lass-Floerl, Cornelia, Dietl, Anna-Maria, Vahedi-Shahandashti, Roya, Kandelbauer, Carmen, Kraak, Bart, Lackner, Michaela, Houbraken, Jos, and Lass-Floerl, Cornelia
- Published
- 2021
8. Development of a PacBio Long-Read Sequencing Assay for High Throughput Detection of Fungicide Resistance in Zymoseptoria tritici
- Author
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Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, Kildea, Steven, Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, and Kildea, Steven
- Abstract
Fungicide resistance has become a challenging problem in management of Septoria tritici blotch (STB), caused by Zymoseptoria tritici, the most destructive disease of winter wheat throughout western and northern Europe. To ensure the continued effectiveness of those fungicides currently used, it is essential to monitor the development and spread of such resistance in field populations of the pathogen. Since resistance to the key families of fungicides used for STB control (demethyalation inhibitors or azoles, succinate dehydrogenase inhibitors or SDHIs and Quinone outside Inhibitors or QoIs) is conferred through target-site mutations, the potential exists to monitor resistance through the molecular detection of alterations in the target site genes. As more efficient fungicides were developed and applied, the pathogen has continuously adapted through accumulating multiple target-site alterations. In order to accurately monitor these changes in field populations, it is therefore becoming increasingly important to completely sequence the targeted genes. Here we report the development of a PacBio assay that facilitates the multiplex amplification and long-read sequencing of the target gene(s) for the azole (CYP51), SDHI (Sdh B, C, and D), and QoI (cytochrome b) fungicides. The assay was developed and optimised using three Irish Z. tritici collections established in spring 2017, which capture the range of fungicide resistance present in modern European populations of Z. tritici. The sequences obtained through the PacBio assay were validated using traditional Sanger sequencing and in vitro sensitivity screenings. To further exploit the long-read and high throughput potential of PacBio sequencing, an additional nine housekeeping genes (act, BTUB, cal, cyp, EF1, GAPDH, hsp80-1, PKC, TFC1) were sequenced and used to provide comprehensive Z. tritici strain genotyping.
- Published
- 2021
- Full Text
- View/download PDF
9. Development of a PacBio Long-Read Sequencing Assay for High Throughput Detection of Fungicide Resistance in Zymoseptoria tritici
- Author
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Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, Kildea, Steven, Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, and Kildea, Steven
- Abstract
Fungicide resistance has become a challenging problem in management of Septoria tritici blotch (STB), caused by Zymoseptoria tritici, the most destructive disease of winter wheat throughout western and northern Europe. To ensure the continued effectiveness of those fungicides currently used, it is essential to monitor the development and spread of such resistance in field populations of the pathogen. Since resistance to the key families of fungicides used for STB control (demethyalation inhibitors or azoles, succinate dehydrogenase inhibitors or SDHIs and Quinone outside Inhibitors or QoIs) is conferred through target-site mutations, the potential exists to monitor resistance through the molecular detection of alterations in the target site genes. As more efficient fungicides were developed and applied, the pathogen has continuously adapted through accumulating multiple target-site alterations. In order to accurately monitor these changes in field populations, it is therefore becoming increasingly important to completely sequence the targeted genes. Here we report the development of a PacBio assay that facilitates the multiplex amplification and long-read sequencing of the target gene(s) for the azole (CYP51), SDHI (Sdh B, C, and D), and QoI (cytochrome b) fungicides. The assay was developed and optimised using three Irish Z. tritici collections established in spring 2017, which capture the range of fungicide resistance present in modern European populations of Z. tritici. The sequences obtained through the PacBio assay were validated using traditional Sanger sequencing and in vitro sensitivity screenings. To further exploit the long-read and high throughput potential of PacBio sequencing, an additional nine housekeeping genes (act, BTUB, cal, cyp, EF1, GAPDH, hsp80-1, PKC, TFC1) were sequenced and used to provide comprehensive Z. tritici strain genotyping.
- Published
- 2021
- Full Text
- View/download PDF
10. Development of a PacBio Long-Read Sequencing Assay for High Throughput Detection of Fungicide Resistance in Zymoseptoria tritici
- Author
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Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, Kildea, Steven, Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, and Kildea, Steven
- Abstract
Fungicide resistance has become a challenging problem in management of Septoria tritici blotch (STB), caused by Zymoseptoria tritici, the most destructive disease of winter wheat throughout western and northern Europe. To ensure the continued effectiveness of those fungicides currently used, it is essential to monitor the development and spread of such resistance in field populations of the pathogen. Since resistance to the key families of fungicides used for STB control (demethyalation inhibitors or azoles, succinate dehydrogenase inhibitors or SDHIs and Quinone outside Inhibitors or QoIs) is conferred through target-site mutations, the potential exists to monitor resistance through the molecular detection of alterations in the target site genes. As more efficient fungicides were developed and applied, the pathogen has continuously adapted through accumulating multiple target-site alterations. In order to accurately monitor these changes in field populations, it is therefore becoming increasingly important to completely sequence the targeted genes. Here we report the development of a PacBio assay that facilitates the multiplex amplification and long-read sequencing of the target gene(s) for the azole (CYP51), SDHI (Sdh B, C, and D), and QoI (cytochrome b) fungicides. The assay was developed and optimised using three Irish Z. tritici collections established in spring 2017, which capture the range of fungicide resistance present in modern European populations of Z. tritici. The sequences obtained through the PacBio assay were validated using traditional Sanger sequencing and in vitro sensitivity screenings. To further exploit the long-read and high throughput potential of PacBio sequencing, an additional nine housekeeping genes (act, BTUB, cal, cyp, EF1, GAPDH, hsp80-1, PKC, TFC1) were sequenced and used to provide comprehensive Z. tritici strain genotyping.
- Published
- 2021
- Full Text
- View/download PDF
11. Development of a PacBio Long-Read Sequencing Assay for High Throughput Detection of Fungicide Resistance in Zymoseptoria tritici
- Author
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Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, Kildea, Steven, Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, and Kildea, Steven
- Abstract
Fungicide resistance has become a challenging problem in management of Septoria tritici blotch (STB), caused by Zymoseptoria tritici, the most destructive disease of winter wheat throughout western and northern Europe. To ensure the continued effectiveness of those fungicides currently used, it is essential to monitor the development and spread of such resistance in field populations of the pathogen. Since resistance to the key families of fungicides used for STB control (demethyalation inhibitors or azoles, succinate dehydrogenase inhibitors or SDHIs and Quinone outside Inhibitors or QoIs) is conferred through target-site mutations, the potential exists to monitor resistance through the molecular detection of alterations in the target site genes. As more efficient fungicides were developed and applied, the pathogen has continuously adapted through accumulating multiple target-site alterations. In order to accurately monitor these changes in field populations, it is therefore becoming increasingly important to completely sequence the targeted genes. Here we report the development of a PacBio assay that facilitates the multiplex amplification and long-read sequencing of the target gene(s) for the azole (CYP51), SDHI (Sdh B, C, and D), and QoI (cytochrome b) fungicides. The assay was developed and optimised using three Irish Z. tritici collections established in spring 2017, which capture the range of fungicide resistance present in modern European populations of Z. tritici. The sequences obtained through the PacBio assay were validated using traditional Sanger sequencing and in vitro sensitivity screenings. To further exploit the long-read and high throughput potential of PacBio sequencing, an additional nine housekeeping genes (act, BTUB, cal, cyp, EF1, GAPDH, hsp80-1, PKC, TFC1) were sequenced and used to provide comprehensive Z. tritici strain genotyping.
- Published
- 2021
- Full Text
- View/download PDF
12. The Environmental Spread of Aspergillus terreus in Tyrol, Austria
- Author
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Dietl, Anna-Maria, Vahedi-Shahandashti, Roya, Kandelbauer, Carmen, Kraak, Bart, Lackner, Michaela, Houbraken, Jos, Lass-Floerl, Cornelia, Dietl, Anna-Maria, Vahedi-Shahandashti, Roya, Kandelbauer, Carmen, Kraak, Bart, Lackner, Michaela, Houbraken, Jos, and Lass-Floerl, Cornelia
- Published
- 2021
13. Dissection of the activity of agricultural fungicides against clinical aspergillus isolates with and without environmentally and medically induced azole resistance
- Author
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Jørgensen, Karin Meinike, Helleberg, Marie, Hare, Rasmus Krøger, Jørgensen, Lise Nistrup, Arendrup, Maiken Cavling, Jørgensen, Karin Meinike, Helleberg, Marie, Hare, Rasmus Krøger, Jørgensen, Lise Nistrup, and Arendrup, Maiken Cavling
- Abstract
Azole resistance is an emerging problem in patients with aspergillosis. The role of fungicides for resistance development and occurrence is not fully elucidated. EUCAST reference MICs of 17 fungicides (11 azoles and 6 others), five azole fungicide metabolites and four medical triazoles were examined against two reference and 28 clinical isolates of A. fumigatus, A. flavus and A. terreus with (n = 12) and without (n = 16) resistance mutations. Eight/11 azole fungicides were active against wild-type A. fumigatus, A. flavus and A. terreus, including four (metconazole, prothioconazole-desthio, prochloraz and imazalil) with low MIC50 (≤2 mg/L) against all three species and epoxiconazole, propiconazole, tebuconazole and difenoconazole also against wild-type A. terreus. Mefentriflucona-zole, azole metabolites and non-azole fungicides MICs were >16 mg/L against A. fumigatus although partial growth inhibition was found with mefentrifluconazole. Moreover, mefentrifluconazole and axozystrobin were active against wild-type A. terreus. Increased MICs (≥3 dilutions) were found for TR34 /L98H, TR34(3) /L98H, TR46 /Y121F/T289A and G432S compared to wild-type A. fumigatus for epoxiconazole, propiconazole, tebuconazole, difenoconazole, prochloraz, imazalil and metconazole (except G432S), and for prothioconazole-desthio against TR46 /Y121F/T289A, specifically. Increased MICs were found in A. fumigatus harbouring G54R, M220K and M220R alterations for five, one and one azole fungicides, respectively, compared to MICs against wild-type A. fumigatus. Similarly, increased MICs wer found for A. terreus with G51A, M217I and Y491H alterations for five, six and two azole fungicides, respectively. Azole fungicides showed activity against wild-type A. fumigatus, A. terreus and A. flavus, but not against all mutant isolates, suggesting the environmental route of azole resistance may have a role for all three species.
- Published
- 2021
14. Development of a PacBio Long-Read Sequencing Assay for High Throughput Detection of Fungicide Resistance in Zymoseptoria tritici
- Author
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Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, Kildea, Steven, Samils, Berit, Andersson, Björn, Edin, Eva, Elfstrand, Malin, Rönneburg, Tilman, Bucur, Diana, Hutton, Fiona, Heick, Thies M., Hellin, Pierre, and Kildea, Steven
- Abstract
Fungicide resistance has become a challenging problem in management of Septoria tritici blotch (STB), caused by Zymoseptoria tritici, the most destructive disease of winter wheat throughout western and northern Europe. To ensure the continued effectiveness of those fungicides currently used, it is essential to monitor the development and spread of such resistance in field populations of the pathogen. Since resistance to the key families of fungicides used for STB control (demethyalation inhibitors or azoles, succinate dehydrogenase inhibitors or SDHIs and Quinone outside Inhibitors or QoIs) is conferred through target-site mutations, the potential exists to monitor resistance through the molecular detection of alterations in the target site genes. As more efficient fungicides were developed and applied, the pathogen has continuously adapted through accumulating multiple target-site alterations. In order to accurately monitor these changes in field populations, it is therefore becoming increasingly important to completely sequence the targeted genes. Here we report the development of a PacBio assay that facilitates the multiplex amplification and long-read sequencing of the target gene(s) for the azole (CYP51), SDHI (Sdh B, C, and D), and QoI (cytochrome b) fungicides. The assay was developed and optimised using three Irish Z. tritici collections established in spring 2017, which capture the range of fungicide resistance present in modern European populations of Z. tritici. The sequences obtained through the PacBio assay were validated using traditional Sanger sequencing and in vitro sensitivity screenings. To further exploit the long-read and high throughput potential of PacBio sequencing, an additional nine housekeeping genes (act, BTUB, cal, cyp, EF1, GAPDH, hsp80-1, PKC, TFC1) were sequenced and used to provide comprehensive Z. tritici strain genotyping.
- Published
- 2021
- Full Text
- View/download PDF
15. Dissection of the activity of agricultural fungicides against clinical aspergillus isolates with and without environmentally and medically induced azole resistance
- Author
-
Jørgensen, Karin Meinike, Helleberg, Marie, Hare, Rasmus Krøger, Jørgensen, Lise Nistrup, Arendrup, Maiken Cavling, Jørgensen, Karin Meinike, Helleberg, Marie, Hare, Rasmus Krøger, Jørgensen, Lise Nistrup, and Arendrup, Maiken Cavling
- Abstract
Azole resistance is an emerging problem in patients with aspergillosis. The role of fungicides for resistance development and occurrence is not fully elucidated. EUCAST reference MICs of 17 fungicides (11 azoles and 6 others), five azole fungicide metabolites and four medical triazoles were examined against two reference and 28 clinical isolates of A. fumigatus, A. flavus and A. terreus with (n = 12) and without (n = 16) resistance mutations. Eight/11 azole fungicides were active against wild-type A. fumigatus, A. flavus and A. terreus, including four (metconazole, prothioconazole-desthio, prochloraz and imazalil) with low MIC50 (≤2 mg/L) against all three species and epoxiconazole, propiconazole, tebuconazole and difenoconazole also against wild-type A. terreus. Mefentriflucona-zole, azole metabolites and non-azole fungicides MICs were >16 mg/L against A. fumigatus although partial growth inhibition was found with mefentrifluconazole. Moreover, mefentrifluconazole and axozystrobin were active against wild-type A. terreus. Increased MICs (≥3 dilutions) were found for TR34 /L98H, TR34(3) /L98H, TR46 /Y121F/T289A and G432S compared to wild-type A. fumigatus for epoxiconazole, propiconazole, tebuconazole, difenoconazole, prochloraz, imazalil and metconazole (except G432S), and for prothioconazole-desthio against TR46 /Y121F/T289A, specifically. Increased MICs were found in A. fumigatus harbouring G54R, M220K and M220R alterations for five, one and one azole fungicides, respectively, compared to MICs against wild-type A. fumigatus. Similarly, increased MICs wer found for A. terreus with G51A, M217I and Y491H alterations for five, six and two azole fungicides, respectively. Azole fungicides showed activity against wild-type A. fumigatus, A. terreus and A. flavus, but not against all mutant isolates, suggesting the environmental route of azole resistance may have a role for all three species.
- Published
- 2021
16. Drug-Resistant Fungi: An Emerging Challenge Threatening Our Limited Antifungal Armamentarium.
- Author
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Arastehfar, Amir, Arastehfar, Amir, Gabaldón, Toni, Garcia-Rubio, Rocio, Jenks, Jeffrey D, Hoenigl, Martin, Salzer, Helmut JF, Ilkit, Macit, Lass-Flörl, Cornelia, Perlin, David S, Arastehfar, Amir, Arastehfar, Amir, Gabaldón, Toni, Garcia-Rubio, Rocio, Jenks, Jeffrey D, Hoenigl, Martin, Salzer, Helmut JF, Ilkit, Macit, Lass-Flörl, Cornelia, and Perlin, David S
- Abstract
The high clinical mortality and economic burden posed by invasive fungal infections (IFIs), along with significant agricultural crop loss caused by various fungal species, has resulted in the widespread use of antifungal agents. Selective drug pressure, fungal attributes, and host- and drug-related factors have counteracted the efficacy of the limited systemic antifungal drugs and changed the epidemiological landscape of IFIs. Species belonging to Candida, Aspergillus, Cryptococcus, and Pneumocystis are among the fungal pathogens showing notable rates of antifungal resistance. Drug-resistant fungi from the environment are increasingly identified in clinical settings. Furthermore, we have a limited understanding of drug class-specific resistance mechanisms in emerging Candida species. The establishment of antifungal stewardship programs in both clinical and agricultural fields and the inclusion of species identification, antifungal susceptibility testing, and therapeutic drug monitoring practices in the clinic can minimize the emergence of drug-resistant fungi. New antifungal drugs featuring promising therapeutic profiles have great promise to treat drug-resistant fungi in the clinical setting. Mitigating antifungal tolerance, a prelude to the emergence of resistance, also requires the development of effective and fungal-specific adjuvants to be used in combination with systemic antifungals.
- Published
- 2020
17. Drug-Resistant Fungi: An Emerging Challenge Threatening Our Limited Antifungal Armamentarium.
- Author
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Arastehfar, Amir, Arastehfar, Amir, Gabaldón, Toni, Garcia-Rubio, Rocio, Jenks, Jeffrey D, Hoenigl, Martin, Salzer, Helmut JF, Ilkit, Macit, Lass-Flörl, Cornelia, Perlin, David S, Arastehfar, Amir, Arastehfar, Amir, Gabaldón, Toni, Garcia-Rubio, Rocio, Jenks, Jeffrey D, Hoenigl, Martin, Salzer, Helmut JF, Ilkit, Macit, Lass-Flörl, Cornelia, and Perlin, David S
- Abstract
The high clinical mortality and economic burden posed by invasive fungal infections (IFIs), along with significant agricultural crop loss caused by various fungal species, has resulted in the widespread use of antifungal agents. Selective drug pressure, fungal attributes, and host- and drug-related factors have counteracted the efficacy of the limited systemic antifungal drugs and changed the epidemiological landscape of IFIs. Species belonging to Candida, Aspergillus, Cryptococcus, and Pneumocystis are among the fungal pathogens showing notable rates of antifungal resistance. Drug-resistant fungi from the environment are increasingly identified in clinical settings. Furthermore, we have a limited understanding of drug class-specific resistance mechanisms in emerging Candida species. The establishment of antifungal stewardship programs in both clinical and agricultural fields and the inclusion of species identification, antifungal susceptibility testing, and therapeutic drug monitoring practices in the clinic can minimize the emergence of drug-resistant fungi. New antifungal drugs featuring promising therapeutic profiles have great promise to treat drug-resistant fungi in the clinical setting. Mitigating antifungal tolerance, a prelude to the emergence of resistance, also requires the development of effective and fungal-specific adjuvants to be used in combination with systemic antifungals.
- Published
- 2020
18. Rapid Parallel Evolution of Azole Fungicide Resistance in Australian Populations of the Wheat Pathogen Zymoseptoria tritici
- Author
-
McDonald, Megan, Renkin, Melanie, Spackman, Merrin, Orchard, B. A., Croll, Daniel, Solomon, Peter, Milgate, Andrew, McDonald, Megan, Renkin, Melanie, Spackman, Merrin, Orchard, B. A., Croll, Daniel, Solomon, Peter, and Milgate, Andrew
- Abstract
Zymoseptoria tritici is a globally distributed fungal pathogen which causes Septoria tritici blotch on wheat. Management of the disease is attempted through the deployment of resistant wheat cultivars and the application of fungicides. However, fungicide resistance is commonly observed in Z. tritici populations, and continuous monitoring is required to detect breakdowns in fungicide efficacy. We recently reported azole-resistant isolates in Australia; however, it remained unknown whether resistance was brought into the continent through gene flow or whether resistance emerged independently. To address this question, we screened 43 isolates across five Australian locations for azole sensitivity and performed whole-genome sequencing on 58 isolates from seven locations to determine the genetic basis of resistance. Population genomic analyses showed extremely strong differentiation between the Australian population recovered after azoles began to be used and both Australian populations recovered before azoles began to be used and populations on different continents. The apparent absence of recent gene flow between Australia and other continents suggests that azole fungicide resistance has evolved de novo and subsequently spread within Tasmania. Despite the isolates being distinct at the whole-genome level, we observed combinations of nonsynonymous substitutions at the CYP51 locus identical to those observed elsewhere in the world. We observed nine previously reported nonsynonymous mutations as well as isolates that carried a combination of the previously reported L50S, S188N, A379G, I381V, Y459DEL, G460DEL, and N513K substitutions. Assays for the 50% effective concentration against a subset of isolates exposed to the tebuconazole and epoxiconazole fungicides showed high levels of azole resistance. The rapid, parallel evolution of a complex CYP51 haplotype that matches a dominant European haplotype demonstrates the enormous potential for de novo resistance emergence in p
- Published
- 2019
19. Azoles and Contaminants in Treated Effluents Interact with CYP1 and CYP19 in Fish
- Author
-
Beijer, Kristina and Beijer, Kristina
- Abstract
Numerous contaminants are present in mixtures in the aquatic environment. Among these are the azoles, a group of chemicals that includes both pharmaceuticals and pesticides. Azole fungicides are designed to inhibit lanosterol 14-demethylase (cytochrome P450 (CYP) 51), while other azoles are intended to inhibit aromatase (CYP19), i.e. the enzyme catalyzing biosynthesis of estrogens. In fish, a variety of CYP enzymes are involved in biotransformation of waterborne contaminants, and in metabolism of endogenous compounds including steroidal hormones. The induction of CYP1A protein and 7-ethoxyresorufin O-deethylase (EROD) activity are common biomarkers for exposure to aryl hydrocarbon receptor (AhR) agonists in fish. We developed an assay to measure inhibition of CYP1A activity (EROD) in three-spined stickleback and rainbow trout gill tissue ex vivo. Several azole fungicides were found to be potent inhibitors of CYP1A activity. A wastewater effluent containing high concentrations of pharmaceuticals was also shown to inhibit CYP1A activity. Further, several azoles inhibited CYP19 activity in rainbow trout brain microsomes in vitro. Azole mixtures reduced both CYP1A and CYP19 activity monotonically and in an additive way. Given the additive action of the azoles, studies to determine adverse effects of azole mixtures on CYP-regulated physiological functions in fish are needed. Induction of EROD and of gene expression of CYP1 in several organs was observed in an in vivo exposure with the same effluent shown to inhibit EROD. This finding could imply that there was a mixture of AhR agonists and CYP1A inhibitors in the effluent. Finally, wastewater treatment technologies were evaluated using biomarker responses in rainbow trout exposed to effluents of different treatments. The results from chemical analysis together with the biomarker results show that ozone and granulated active carbon treatment removed most pharmaceuticals, as well as AhR agonists and other chemicals present
- Published
- 2015
20. Azoles and Contaminants in Treated Effluents Interact with CYP1 and CYP19 in Fish
- Author
-
Beijer, Kristina and Beijer, Kristina
- Abstract
Numerous contaminants are present in mixtures in the aquatic environment. Among these are the azoles, a group of chemicals that includes both pharmaceuticals and pesticides. Azole fungicides are designed to inhibit lanosterol 14-demethylase (cytochrome P450 (CYP) 51), while other azoles are intended to inhibit aromatase (CYP19), i.e. the enzyme catalyzing biosynthesis of estrogens. In fish, a variety of CYP enzymes are involved in biotransformation of waterborne contaminants, and in metabolism of endogenous compounds including steroidal hormones. The induction of CYP1A protein and 7-ethoxyresorufin O-deethylase (EROD) activity are common biomarkers for exposure to aryl hydrocarbon receptor (AhR) agonists in fish. We developed an assay to measure inhibition of CYP1A activity (EROD) in three-spined stickleback and rainbow trout gill tissue ex vivo. Several azole fungicides were found to be potent inhibitors of CYP1A activity. A wastewater effluent containing high concentrations of pharmaceuticals was also shown to inhibit CYP1A activity. Further, several azoles inhibited CYP19 activity in rainbow trout brain microsomes in vitro. Azole mixtures reduced both CYP1A and CYP19 activity monotonically and in an additive way. Given the additive action of the azoles, studies to determine adverse effects of azole mixtures on CYP-regulated physiological functions in fish are needed. Induction of EROD and of gene expression of CYP1 in several organs was observed in an in vivo exposure with the same effluent shown to inhibit EROD. This finding could imply that there was a mixture of AhR agonists and CYP1A inhibitors in the effluent. Finally, wastewater treatment technologies were evaluated using biomarker responses in rainbow trout exposed to effluents of different treatments. The results from chemical analysis together with the biomarker results show that ozone and granulated active carbon treatment removed most pharmaceuticals, as well as AhR agonists and other chemicals present
- Published
- 2015
21. Azoles and Contaminants in Treated Effluents Interact with CYP1 and CYP19 in Fish
- Author
-
Beijer, Kristina and Beijer, Kristina
- Abstract
Numerous contaminants are present in mixtures in the aquatic environment. Among these are the azoles, a group of chemicals that includes both pharmaceuticals and pesticides. Azole fungicides are designed to inhibit lanosterol 14-demethylase (cytochrome P450 (CYP) 51), while other azoles are intended to inhibit aromatase (CYP19), i.e. the enzyme catalyzing biosynthesis of estrogens. In fish, a variety of CYP enzymes are involved in biotransformation of waterborne contaminants, and in metabolism of endogenous compounds including steroidal hormones. The induction of CYP1A protein and 7-ethoxyresorufin O-deethylase (EROD) activity are common biomarkers for exposure to aryl hydrocarbon receptor (AhR) agonists in fish. We developed an assay to measure inhibition of CYP1A activity (EROD) in three-spined stickleback and rainbow trout gill tissue ex vivo. Several azole fungicides were found to be potent inhibitors of CYP1A activity. A wastewater effluent containing high concentrations of pharmaceuticals was also shown to inhibit CYP1A activity. Further, several azoles inhibited CYP19 activity in rainbow trout brain microsomes in vitro. Azole mixtures reduced both CYP1A and CYP19 activity monotonically and in an additive way. Given the additive action of the azoles, studies to determine adverse effects of azole mixtures on CYP-regulated physiological functions in fish are needed. Induction of EROD and of gene expression of CYP1 in several organs was observed in an in vivo exposure with the same effluent shown to inhibit EROD. This finding could imply that there was a mixture of AhR agonists and CYP1A inhibitors in the effluent. Finally, wastewater treatment technologies were evaluated using biomarker responses in rainbow trout exposed to effluents of different treatments. The results from chemical analysis together with the biomarker results show that ozone and granulated active carbon treatment removed most pharmaceuticals, as well as AhR agonists and other chemicals present
- Published
- 2015
22. Azoles and Contaminants in Treated Effluents Interact with CYP1 and CYP19 in Fish
- Author
-
Beijer, Kristina and Beijer, Kristina
- Abstract
Numerous contaminants are present in mixtures in the aquatic environment. Among these are the azoles, a group of chemicals that includes both pharmaceuticals and pesticides. Azole fungicides are designed to inhibit lanosterol 14-demethylase (cytochrome P450 (CYP) 51), while other azoles are intended to inhibit aromatase (CYP19), i.e. the enzyme catalyzing biosynthesis of estrogens. In fish, a variety of CYP enzymes are involved in biotransformation of waterborne contaminants, and in metabolism of endogenous compounds including steroidal hormones. The induction of CYP1A protein and 7-ethoxyresorufin O-deethylase (EROD) activity are common biomarkers for exposure to aryl hydrocarbon receptor (AhR) agonists in fish. We developed an assay to measure inhibition of CYP1A activity (EROD) in three-spined stickleback and rainbow trout gill tissue ex vivo. Several azole fungicides were found to be potent inhibitors of CYP1A activity. A wastewater effluent containing high concentrations of pharmaceuticals was also shown to inhibit CYP1A activity. Further, several azoles inhibited CYP19 activity in rainbow trout brain microsomes in vitro. Azole mixtures reduced both CYP1A and CYP19 activity monotonically and in an additive way. Given the additive action of the azoles, studies to determine adverse effects of azole mixtures on CYP-regulated physiological functions in fish are needed. Induction of EROD and of gene expression of CYP1 in several organs was observed in an in vivo exposure with the same effluent shown to inhibit EROD. This finding could imply that there was a mixture of AhR agonists and CYP1A inhibitors in the effluent. Finally, wastewater treatment technologies were evaluated using biomarker responses in rainbow trout exposed to effluents of different treatments. The results from chemical analysis together with the biomarker results show that ozone and granulated active carbon treatment removed most pharmaceuticals, as well as AhR agonists and other chemicals present
- Published
- 2015
23. Azoles and Contaminants in Treated Effluents Interact with CYP1 and CYP19 in Fish
- Author
-
Beijer, Kristina and Beijer, Kristina
- Abstract
Numerous contaminants are present in mixtures in the aquatic environment. Among these are the azoles, a group of chemicals that includes both pharmaceuticals and pesticides. Azole fungicides are designed to inhibit lanosterol 14-demethylase (cytochrome P450 (CYP) 51), while other azoles are intended to inhibit aromatase (CYP19), i.e. the enzyme catalyzing biosynthesis of estrogens. In fish, a variety of CYP enzymes are involved in biotransformation of waterborne contaminants, and in metabolism of endogenous compounds including steroidal hormones. The induction of CYP1A protein and 7-ethoxyresorufin O-deethylase (EROD) activity are common biomarkers for exposure to aryl hydrocarbon receptor (AhR) agonists in fish. We developed an assay to measure inhibition of CYP1A activity (EROD) in three-spined stickleback and rainbow trout gill tissue ex vivo. Several azole fungicides were found to be potent inhibitors of CYP1A activity. A wastewater effluent containing high concentrations of pharmaceuticals was also shown to inhibit CYP1A activity. Further, several azoles inhibited CYP19 activity in rainbow trout brain microsomes in vitro. Azole mixtures reduced both CYP1A and CYP19 activity monotonically and in an additive way. Given the additive action of the azoles, studies to determine adverse effects of azole mixtures on CYP-regulated physiological functions in fish are needed. Induction of EROD and of gene expression of CYP1 in several organs was observed in an in vivo exposure with the same effluent shown to inhibit EROD. This finding could imply that there was a mixture of AhR agonists and CYP1A inhibitors in the effluent. Finally, wastewater treatment technologies were evaluated using biomarker responses in rainbow trout exposed to effluents of different treatments. The results from chemical analysis together with the biomarker results show that ozone and granulated active carbon treatment removed most pharmaceuticals, as well as AhR agonists and other chemicals present
- Published
- 2015
24. Azole interactions with multidrug therapy in pediatric oncology
- Author
-
Ruggiero, Antonio, Arena, R, Battista, A, Rizzo, D, Attinà, G, Riccardi, Riccardo, Ruggiero, Antonio (ORCID:0000-0002-6052-3511), Riccardi, Riccardo (ORCID:0000-0001-7515-6622), Ruggiero, Antonio, Arena, R, Battista, A, Rizzo, D, Attinà, G, Riccardi, Riccardo, Ruggiero, Antonio (ORCID:0000-0002-6052-3511), and Riccardi, Riccardo (ORCID:0000-0001-7515-6622)
- Abstract
Patients with cancer receive multidrug therapy. Antineoplastic agents and supportive care drugs are often administered together, leading to potential drug-drug interactions. These interactions may have significant clinical implications in terms of toxicity or a decrease in the efficacy of the treatment administered. Here, we focus on the role of azoles and their main pharmacokinetic interactions with the principal classes of drugs used in pediatric oncology. The co-administration of azoles and antineoplastic agents, corticosteroids, immunosuppressants, antacids, antiemetics, antiepileptic drugs and analgesics was investigated, and a practical guide on the management of these drugs when administered together is provided.
- Published
- 2013
25. Treatment of HIV-related fluconazole-resistant oral candidosis with D0870, a new triazole antifungal
- Author
-
Cartledge, Jonathan D.Jonathan, Denning, David W.David, Dupont, Bertrand, Clumeck, Nathan, De Wit, Stéphane, Midgley, Jennifer, Hawkins, David A.David, Gazzard, Brian, Cartledge, Jonathan D.Jonathan, Denning, David W.David, Dupont, Bertrand, Clumeck, Nathan, De Wit, Stéphane, Midgley, Jennifer, Hawkins, David A.David, and Gazzard, Brian
- Abstract
SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 1998
26. Treatment of HIV-related fluconazole-resistant oral candidosis with D0870, a new triazole antifungal
- Author
-
Cartledge, Jonathan D.Jonathan, Denning, David W.David, Dupont, Bertrand, Clumeck, Nathan, De Wit, Stéphane, Midgley, Jennifer, Hawkins, David A.David, Gazzard, Brian, Cartledge, Jonathan D.Jonathan, Denning, David W.David, Dupont, Bertrand, Clumeck, Nathan, De Wit, Stéphane, Midgley, Jennifer, Hawkins, David A.David, and Gazzard, Brian
- Abstract
SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 1998
27. Rare yeast and resistance mechanisms
- Author
-
Pérez Hansen, Antonio and Pérez Hansen, Antonio
- Abstract
Candida infections are one of the most common nosocomial infections and are a severe threat to immunologically compromised patients. Most infections by Candida are caused by a small number of species. However, due to treatment pressure some uncommon species which are intrinsically resistant to some of the common antifungal drugs (azoles, echinocandins and amphotericin B) are becoming more prevalent. This thesis focuses on three species Candida inconspicua, Candida rugosa and Candida, which have been described in literature as fluconazole resistant. The clinical isolate collection was created with the collaboration of cooperating institutions. The collection was submitted to in vitro antifungal susceptibility testing using two different methods broth-microdilution and commercial Etest. Antifungal susceptibility results showed that the species of interest have on average an elevated minimal inhibitory concentration to some of the antifungal families. Both Candida inconspicua and Candida ciferrii had elevated azole resistance profiles that were comparable to other commonly know azole resistant species. Candida rugosa, on the other hand, presented an echinocandin resistant profile. Sequencing of the hotspot region of erg11 and fks1 presented amino acid changes in comparison with Candida albicans in at least one of the hotspot of each of our species of interest. Candida ciferrii presented the most amino acid changes in both genes. Both nucleotides and amino acids were well conserved between isolates, but varied between species. In addition, Candida inconspicua ploidy study revealed its heterozygous nature of erg11 and fks1 genesin these species. In conclusion, the results presented in this thesis shows the resistance profiles and the possible molecular mechanism behind in Candida inconspicua, Candida rugosa and Candida ciferrii., by MSc, Antonio Pérez Hansen, Dissertation Medical University of Innsbruck 2019
28. Rare yeast and resistance mechanisms
- Author
-
Pérez Hansen, Antonio and Pérez Hansen, Antonio
- Abstract
Candida infections are one of the most common nosocomial infections and are a severe threat to immunologically compromised patients. Most infections by Candida are caused by a small number of species. However, due to treatment pressure some uncommon species which are intrinsically resistant to some of the common antifungal drugs (azoles, echinocandins and amphotericin B) are becoming more prevalent. This thesis focuses on three species Candida inconspicua, Candida rugosa and Candida, which have been described in literature as fluconazole resistant. The clinical isolate collection was created with the collaboration of cooperating institutions. The collection was submitted to in vitro antifungal susceptibility testing using two different methods broth-microdilution and commercial Etest. Antifungal susceptibility results showed that the species of interest have on average an elevated minimal inhibitory concentration to some of the antifungal families. Both Candida inconspicua and Candida ciferrii had elevated azole resistance profiles that were comparable to other commonly know azole resistant species. Candida rugosa, on the other hand, presented an echinocandin resistant profile. Sequencing of the hotspot region of erg11 and fks1 presented amino acid changes in comparison with Candida albicans in at least one of the hotspot of each of our species of interest. Candida ciferrii presented the most amino acid changes in both genes. Both nucleotides and amino acids were well conserved between isolates, but varied between species. In addition, Candida inconspicua ploidy study revealed its heterozygous nature of erg11 and fks1 genesin these species. In conclusion, the results presented in this thesis shows the resistance profiles and the possible molecular mechanism behind in Candida inconspicua, Candida rugosa and Candida ciferrii., by MSc, Antonio Pérez Hansen, Dissertation Medical University of Innsbruck 2019
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