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Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are evolutionarily conserved, multi-subunit machinery that play vital roles in the regulation of gene expression by controlling nucleosome positioning and occupancy. However, little is known about the subunit composition of SPLAYED (SYD)-containing SWI/SNF complexes in plants. Here, we show that the Arabidopsis thaliana Leaf and Flower Related (LFR) is a subunit of SYD-containing SWI/SNF complexes. LFR interacts directly with multiple SWI/SNF subunits, including the catalytic ATPase subunit SYD, in vitro and in vivo. Phenotypic analyses of lfr-2 mutant flowers revealed that LFR is important for proper filament and pistil development, resembling the function of SYD. Transcriptome profiling revealed that LFR and SYD shared a subset of co-regulated genes. We further demonstrate that the LFR and SYD interdependently activate the transcription of AGAMOUS (AG), a C-class floral organ identity gene, by regulating the occupation of nucleosome, chromatin loop, histone modification, and Pol II enrichment on the AG locus. Furthermore, the chromosome conformation capture (3C) assay revealed that the gene loop at AG locus is negatively correlated with the AG expression level, and LFR-SYD was functional to demolish the AG chromatin loop to promote its transcription. Collectively, these results provide insight into the molecular mechanism of the Arabidopsis SYD-SWI/SNF complex in the control of higher chromatin conformation of the floral identity gene essential to plant reproductive organ development., (© 2023 Society for Experimental Biology and John Wiley & Sons Ltd.)

Low temperatures restrict the growth and geographic distribution of plants, as well as crop yields. Appropriate transcriptional regulation is critical for cold acclimation in plants. In this study, we found that the mutation of Leaf and flower related (LFR), a component of SWI/SNF chromatin remodeling complex (CRC) important for transcriptional regulation in Arabidopsis ( Arabidopsis thaliana ), resulted in hypersensitivity to freezing stress in plants with or without cold acclimation, and this defect was successfully complemented by LFR . The expression levels of CBFs and COR genes in cold-treated lfr-1 mutant plants were lower than those in wild-type plants. Furthermore, LFR was found to interact directly with ICE1 in yeast and plants. Consistent with this, LFR was able to directly bind to the promoter region of CBF3 , a direct target of ICE1. LFR was also able to bind to ICE1 chromatin and was required for ICE1 transcription. Together, these results demonstrate that LFR interacts directly with ICE1 and activates ICE1 and CBF3 gene expression in response to cold stress. Our work enhances our understanding of the epigenetic regulation of cold responses in plants., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Ma, Wang, Sun, Tian, Guo, Cui and Zhao.)

Accurate measurements of the oxygen concentration in liquid lead-bismuth eutectic (LBE) alloys are essential for ensuring optimum cooling conditions in heavy liquid metal coolant fast reactors. However, while unavoidable variations in the Bi contents of these alloys can affect the accuracy of these measurements, this issue has not yet been rigorously evaluated. The present work addresses this issue by evaluating variations in oxygen concentration measurements obtained experimentally for oxygen-saturated liquid LBE alloys with different Bi contents at different temperatures using a solid electrolyte oxygen sensor. Theoretical relationships are established between sensor voltage, oxygen concentration, temperature, and Bi content under the applied experimental conditions, and excellent agreement is obtained between the experimental and theoretical results. The theoretical relationships establish that the voltage decreases by about 1 mV for every 1 wt% increase in Bi content at a temperature of 400 °C. At a fixed voltage, with the increase of T , the influence of the Bi content on the C O calculation results gradually increased. Finally, the impact of varying Bi contents on the accuracy of oxygen concentration measurements is evaluated under practical reactor operation conditions, and higher requirements for the control of dissolved oxygen in LBE-cooled fast reactors are proposed., Competing Interests: The authors declare no competing interests., (© 2022 The Author(s).)

The 9-12% Cr ferritic-martensitic heat-resistant steel is the main candidate structural material for the Lead-cooled Faster Reactor. The lower Gibbs free energy change of Si oxide can promote the formation of a stable oxide layer, which can improve the corrosion resistance of the material. Therefore, it is of great significance to study the effect of silicon (Si) on the corrosion resistance of T91 steel in lead-bismuth eutectic (LBE). The corrosion resistance of T91 steel with Si contents of 0.5 wt.%, 1.3 wt.%, and 2.0 wt.%, both in dynamic and static LBE at 550 °C, was investigated. The microstructure was analyzed by X-ray diffraction (XRD), scanning electron microscope (SEM) and transmission electron microscope (TEM), while the oxide films were characterized by electron probe microanalysis (EPMA). Results show that the addition of Si is conducive to improving the corrosion resistance of T91 steel in LBE. T91 steel with high Si content has a thinner and more stable oxide film. The change of Si content can change the contact angle between the steel and LBE, and the contact angle is the largest when the Si content is 1.3 wt.%. The Si-rich oxide layer is usually located in the inner oxide layer, which promotes the formation of a Cr oxide layer located in the internal oxidation zone (IOZ). Si will not enter the precipitated phase, but only change the ferrite content. The oxidation model of T91 steel containing Si in LBE was also proposed.

Light-dependent seed germination guarantees seedling proximity to the soil surface, enabling quick photosynthetic energy supply. While seedling hypocotyl length is mainly used in phytochrome physiological assays to determine the functional impact of photoreceptor point mutations, different intracellular localizations, or the function of signal transduction components, phytochrome-controlled seed germination offers a different, very sensitive tool to test the phytochrome photoreceptor network. Photon fluences as low as 1 nmol m -2 are sufficient to elicit the phytochrome A (phyA)-dependent very low fluence response (VLFR), whereas higher fluences (> 10 μmol m -2 ) are needed to elicit the phyB-controlled and phyB-photoreversible low fluence response (LFR). Taking advantage of the different sensitivities of both phytochromes to different light qualities and quantities, a screening protocol is presented to score germination under different light conditions., (© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)

Leaves start to develop at the peripheral zone of the shoot apical meristem. Thereafter, symmetric and flattened leaf laminae are formed. These events are simultaneously regulated by auxin, transcription factors, and epigenetic regulatory factors. However, the relationships among these factors are not well known. In this study, we conducted protein-protein interaction assays to show that our previously reported Leaf and Flower Related (LFR) physically interacted with SWI3B, a component of the ATP-dependent chromatin remodeling SWI/SNF complex in Arabidopsis. The results of truncated analysis and transgenic complementation showed that the N-terminal domain (25-60 amino acids) of LFR was necessary for its interaction with SWI3B and was crucial for LFR functions in Arabidopsis leaf development. Genetic results showed that the artificial microRNA knockdown lines of SWI3B ( SWI3B-amic ) had a similar upward-curling leaf phenotype with that of LFR loss-of-function mutants. ChIP-qPCR assay was conducted to show that LFR and SWI3B co-targeted the promoters of YABBY1 / FILAMENTOUS FLOWER ( YAB1 / FIL ) and IAA carboxyl methyltransferase 1 ( IAMT1 ), which were misexpressed in lfr and SWI3B-amic mutants. In addition, the association between LFR and the FIL and IAMT1 loci was partly hampered by the knockdown of SWI3B . These data suggest that LFR interacts with the chromatin-remodeling complex component, SWI3B, and influences the transcriptional expression of the important transcription factor, FIL , and the auxin metabolism enzyme, IAMT1 , in flattened leaf lamina development., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Lin, Yuan, Zhu, Yuan, Li, Yuan, Cui and Zhao.)

Background: Since the completion of the Human Genome Project in 2003, it is estimated that more than 200,000 individual whole human genomes have been sequenced. A stunning accomplishment in such a short period of time. However, most of these were sequenced without experimental haplotype data and are therefore missing an important aspect of genome biology. In addition, much of the genomic data is not available to the public and lacks phenotypic information., Findings: As part of the Personal Genome Project, blood samples from 184 participants were collected and processed using Complete Genomics' Long Fragment Read technology. Here, we present the experimental whole genome haplotyping and sequencing of these samples to an average read coverage depth of 100X. This is approximately three-fold higher than the read coverage applied to most whole human genome assemblies and ensures the highest quality results. Currently, 114 genomes from this dataset are freely available in the GigaDB repository and are associated with rich phenotypic data; the remaining 70 should be added in the near future as they are approved through the PGP data release process. For reproducibility analyses, 20 genomes were sequenced at least twice using independent LFR barcoded libraries. Seven genomes were also sequenced using Complete Genomics' standard non-barcoded library process. In addition, we report 2.6 million high-quality, rare variants not previously identified in the Single Nucleotide Polymorphisms database or the 1000 Genomes Project Phase 3 data., Conclusions: These genomes represent a unique source of haplotype and phenotype data for the scientific community and should help to expand our understanding of human genome evolution and function.

Background: Intraoperative evaluation of successful pancreatic tumor ablation using irreversible electroporation (IRE) is difficult secondary to lack of visual confirmation. The IRE generator provides feedback by reporting current (amperage), which can be used to calculate changes in tumor tissue resistance. The purpose of the study was to determine if resistance can be used to predict successful tumor ablation during IRE for pancreatic cancers., Study Design: All patients undergoing pancreatic IRE from March 2010 to December 2012 were evaluated using a prospective database. Intraoperative information, including change in tumor resistance during ablation and slope of the resistance curve, were used to evaluate effectiveness of tumor ablation in terms of local failure or recurrence (LFR) and disease-free survival (DFS)., Results: A total of 65 patients underwent IRE for locally advanced pancreatic cancer. Median follow-up was 23 months. Local failure or recurrence was seen in 17 patients at 3, 6, or 9 months post IRE. Change in tumor tissue resistance and the slope of the resistance curve were both significant in predicting LFR (p = 0.02 and p = 0.01, respectively). The median local disease-free survival was 5.5 months in patients who had recurrence compared with 12.6 months in patients who did not recur (p = 0.03). Neither mean change in tumor tissue resistance nor the slope of the resistance curve significantly predicted overall DFS., Conclusions: Mean change in tumor tissue resistance and the slope of the resistance curve could be used intraoperatively to assess successful tumor ablation during IRE. Larger sample size and longer follow-up are needed to determine if these parameters can be used to predict DFS., (Copyright © 2014 American College of Surgeons. Published by Elsevier Inc. All rights reserved.)

From everyday experience we know that it is generally easier to interact with someone who adapts to our behavior. Beyond this, achieving a common goal will very much depend on who adapts to whom and to what degree. Therefore, many joint action tasks such as musical performance prove to be more successful when defined leader-follower roles are established. In the present study, we present a novel approach to explore the mechanisms of how individuals lead and, using functional magnetic resonance imaging (fMRI), probe the neural correlates of leading. Specifically, we implemented an adaptive virtual partner (VP), an auditory pacing signal, with which individuals were instructed to tap in synchrony while maintaining a steady tempo. By varying the degree of temporal adaptation (period correction) implemented by the VP, we manipulated the objective control individuals had to exert to maintain the overall tempo of the pacing sequence (which was prone to tempo drift with high levels of period correction). Our imaging data revealed that perceiving greater influence and leading are correlated with right lateralized frontal activation of areas involved in cognitive control and self-related processing. Using participants' subjective ratings of influence and task difficulty, we classified a subgroup of our cohort as "leaders", individuals who found the task of synchronizing easier when they felt more in control. Behavioral tapping measures showed that leaders employed less error correction and focused more on self-tapping (prioritizing the instruction to maintain the given tempo) than on the stability of the interaction (prioritizing the instruction to synchronize with the VP), with correlated activity in areas involved in self-initiated action including the pre-supplementary motor area., (© 2013.)