59 results on '"Wu, Lizhen"'
Search Results
2. Association between triglyceride-glucose index and fractional exhaled nitric oxide in adults with asthma from NHANES 2007-2012.
- Author
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Pan Y, Wu L, Yao S, Xia J, Giri M, Wen J, and Zhuang S
- Subjects
- Humans, Female, Male, Adult, Middle Aged, Body Mass Index, Blood Glucose metabolism, Leukocyte Count, Linear Models, Eosinophils metabolism, Fractional Exhaled Nitric Oxide Testing, Exhalation, Breath Tests, Asthma metabolism, Asthma diagnosis, Triglycerides metabolism, Triglycerides blood, Nutrition Surveys, Nitric Oxide metabolism, Nitric Oxide analysis
- Abstract
Background: Several studies have shown a potential relationship between triglyceride-glucose index (TGI) and asthma. However, limited research has been conducted on the relationship between TGI and fractional exhaled nitric oxide (FeNO)., Methods: A total of 1,910 asthmatic individuals from the National Health and Nutrition Examination Survey (NHANES) database were included in this study. Linear regression analyses were used to investigate the relationship between TGI and FeNO in patients with asthma. Subsequently, a trend test was applied to verify whether there was a linear relationship between the TGI and FeNO. Finally, a subgroup analysis was performed to confirm the relationship among the different subgroup populations., Results: Multivariable linear regression analyses showed that TGI was linearly related to FeNO in the asthmatic population. The trend test additionally validated the positive linear relationship between TGI and FeNO. The result of XGBoost revealed the five most influential factors on FeNO in a ranking of contrasted importance: eosinophil (EOS), body mass index (BMI), poverty-to-income ratio (PIR), TGI, and white blood cell count (WBC)., Conclusions: This investigation revealed a positive linear relationship between TGI and FeNO in patients with asthma. This finding suggests a potential relationship between TGI and airway inflammation in patients with asthma, thereby facilitating the prompt identification of irregularities and providing a basis for clinical decision making. This study provides a novel perspective on asthma management., (© 2024. The Author(s).)
- Published
- 2024
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3. Ceftriaxone alters the gut microbiome composition and reduces alcohol intake in male and female Sprague-Dawley rats.
- Author
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Duclot F, Wu L, Wilkinson CS, Kabbaj M, and Knackstedt LA
- Subjects
- Animals, Female, Male, Rats, Anti-Bacterial Agents pharmacology, Ethanol pharmacology, Ethanol administration & dosage, Feces microbiology, Ceftriaxone pharmacology, Rats, Sprague-Dawley, Gastrointestinal Microbiome drug effects, Alcohol Drinking
- Abstract
Ceftriaxone is an antibiotic that increases central nervous system (CNS) protein expression of the glutamate transporters GLT-1 and xCT and ameliorates pathological behaviors in rodent models of neurological disease and substance use disorder. However, little ceftriaxone passes through the blood-brain barrier, the CNS binding partner of ceftriaxone is unknown, and ceftriaxone does not consistently upregulate GLT-1 and xCT in cell culture. Ceftriaxone alters the gut microbiome composition in rodents and humans, and the microbiome-gut-brain axis regulates drug-seeking. Thus, here we test the hypothesis that ceftriaxone reduces alcohol intake while ameliorating alcohol-induced disruption of the gut microbiome composition. Male and female Sprague-Dawley rats received intermittent access to alcohol (IAA) while controls received access to only water. Following 17 IAA sessions, ceftriaxone/vehicle treatment was given for 5 days. Analysis of the gut microbiome composition was assessed by 16S rRNA gene amplicon sequencing conducted on fecal pellets collected prior to and after alcohol consumption and following ceftriaxone treatment. Male rats displayed escalated alcohol intake and preference over the course of the 17 sessions; however, total alcohol intake did not differ between the sexes. Ceftriaxone reduced alcohol intake and preference in male and female rats. While alcohol affected a diverse set of amplicon sequencing variants (ASV), ceftriaxone markedly reduced the diversity of microbial communities reflected by a blooming of the Enterococcaceae family. The remaining effects of ceftriaxone, however, encompassed families both affected and unaffected by prior alcohol drinking and highlight the Ruminococcaceae and Muribaculaceae families as bidirectionally modulated by alcohol and ceftriaxone. Altogether, our study confirms that ceftriaxone reduces alcohol intake in rats and partially reverses alcohol-induced dysbiosis., Competing Interests: Declaration of competing interest The authors have no conflicts of interest to report., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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4. Evaluation of the positional reproducibility of sedation versus non-sedation state in pediatric radiotherapy: a retrospective study.
- Author
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Lei Z, Shi Y, Liu Y, Gao B, Shao K, Lin X, Wu L, and Yao Z
- Abstract
Objective: To assess the positional reproducibility of sedated and non-sedated pediatric tumor patients during radiotherapy through a retrospective analysis of cone-beam computed tomography (CBCT) and planned computed tomography (CT) scan data., Methods: The positional reproducibility of 40 pediatric tumor patients, aged 2 to 17 years with a median age of 4.5 years, who received radiotherapy under sedated and non-sedated states was retrospectively compared. The first CBCT images obtained during CT-based treatment planning were analyzed. The analysis encompassed six-dimensional positional changes, including vertical (Vrt), longitudinal (Lng), lateral (Lat), rotational (Rtn), pitch, and roll directions. Kolmogorov-Smirnov Z nonparametric rank-sum testing was employed to evaluate the positional deviations, considering absolute values regardless of directionality. Data were further stratified based on different fixation methods used during treatment., Results: Sedated patients exhibited significantly smaller positional deviations in Vrt, Lng, Lat, and Rtn directions in the body membrane group compared with their non-sedated counterparts (P<0.05). Similarly, sedated patients demonstrated reduced positional deviations in Vrt, Lng, Lat, Rtn, pitch and Roll directions in the head and neck group compared with non-sedated patients (P<0.05). Meanwhile, compared with vacuum bag plus body membrane fixation, the head and shoulder film fixation technique proved superior in terms of positional reproducibility during sedated treatment, specifically in Vrt, Lng, Lat, Pitch, and Roll directions (P<0.05). Similarly, compared with the alternative fixation method, the head and shoulder film fixation method showed better positional deviations in six-Dimensional directions in non-sedated patients (P<0.05)., Conclusion: While sedated radiotherapy may offer advantages in terms of positional reproducibility, the present study underscores the importance of considering non-sedated radiotherapy as a viable option for pediatric tumor patients. Non-sedated treatment not only provides effective tumor control but also mitigates the psychological trauma and long-term side effects associated with repeated sedative drug use. Future studies should further explore the optimal sedation and fixation strategies for pediatric radiotherapy., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Lei, Shi, Liu, Gao, Shao, Lin, Wu and Yao.)
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- 2024
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5. Transcription elongation factor ELOF1 is required for efficient somatic hypermutation and class switch recombination.
- Author
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Wu L, Yadavalli AD, Matos-Rodrigues G, Xu D, Pintado-Urbanc AP, Simon MD, Wu W, Nussenzweig A, and Schatz DG
- Abstract
Somatic hypermutation (SHM) and class switch recombination (CSR) diversify immunoglobulin (Ig) genes and are initiated by the activation induced deaminase (AID), a single-stranded DNA cytidine deaminase that is thought to engage its substrate in the context of RNA polymerase II (RNAPII) transcription. Through a loss of function genetic screen, we identified numerous potential factors involved in SHM including ELOF1, a component of the RNAPII elongation complex that has been shown to function in DNA repair and transcription elongation. Loss of ELOF1 strongly compromises SHM, CSR, and AID targeting and alters RNAPII transcription by reducing RNAPII pausing downstream of transcription start sites and levels of serine 5 but not serine 2 phosphorylated RNAPII throughout transcribed genes. ELOF1 must bind to RNAPII to be a proximity partner for AID and to function in SHM and CSR. We propose that ELOF1 helps create the appropriate stalled RNAPII substrate on which AID acts.
- Published
- 2024
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6. Diabetes mellitus, systemic inflammation and overactive bladder.
- Author
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He Q, Wu L, Deng C, He J, Wen J, Wei C, and You Z
- Subjects
- Humans, Female, Cross-Sectional Studies, Male, Middle Aged, Adult, Nutrition Surveys, Aged, Machine Learning, Blood Glucose metabolism, Blood Glucose analysis, Prevalence, Urinary Bladder, Overactive epidemiology, Urinary Bladder, Overactive blood, Inflammation blood, Biomarkers blood, Diabetes Mellitus epidemiology, Diabetes Mellitus blood
- Abstract
Background: Increasing evidence emphasizes the potential relationship between diabetes and OAB (overactive bladder). However, large population epidemiology is still lacking., Methods: This cross-sectional study included six cycle NHANES surveys, with a total of 23863 participants. Logistic regression models were constructed to analyze the association between diabetes mellitus, diabetes-related markers, and inflammatory biomarkers with OAB. Restricted cubic splines were used to analyze the non-linear associations. Mediating analysis was performed to test the effect of inflammatory biomarkers on the relationship between diabetes-related markers and OAB. Finally, machine learning models were applied to predict the relative importance and construct the best-fit model., Results: Diabetes mellitus participants' OAB prevalence increased by 77% compared with non-diabetes. As the quartiles of diabetes-related markers increased, the odds of OAB monotonically increased in three models (all p for trend < 0.001). Glycohemoglobin exhibited a linear association with OAB (p for nonlinearity > 0.05). White blood cells significantly mediated the associations between diabetes-related markers (glycohemoglobin, fasting glucose, and insulin) with OAB, and the proportions were 7.23%, 8.08%, and 17.74%, respectively (all p < 0.0001). Neutrophils partly mediated the correlation between (glycohemoglobin, fasting glucose, and insulin) and OAB at 6.58%, 9.64%, and 17.93%, respectively (all p < 0.0001). Machine learning of the XGBoost model constructs the best fit model, and XGBoost predicts glycohemoglobin is the most important indicator on OAB., Conclusion: Our research revealed diabetes mellitus and diabetes-related markers were remarkably associated with OAB, and systemic inflammation was an important mediator of this association., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 He, Wu, Deng, He, Wen, Wei and You.)
- Published
- 2024
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7. Voluntary alcohol intake alters the motivation to seek intravenous oxycodone and neuronal activation during the reinstatement of oxycodone and sucrose seeking.
- Author
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Wilkinson CS, Blount HL, Davis S, Rojas G, Wu L, Murphy NP, Schwendt M, and Knackstedt LA
- Subjects
- Female, Rats, Male, Animals, Sucrose metabolism, Alcohol Drinking, Ethanol metabolism, Receptors, Dopamine metabolism, Neurons metabolism, Water metabolism, Self Administration, Extinction, Psychological, Oxycodone, Motivation
- Abstract
Opioid-alcohol polysubstance use is prevalent and worsens treatment outcomes. Here we assessed whether co-consumption of oxycodone and alcohol influence the intake of one another, demand for oxycodone, and the neurocircuitry underlying cue-primed reinstatement of oxycodone-seeking. Male and female rats underwent oxycodone intravenous self-administration (IVSA) with homecage access to alcohol (20% v/v) and/or water immediately after the IVSA session. Next, economic demand for intravenous oxycodone was assessed while access to alcohol and/or water continued. Control rats self-administered sucrose followed by access to alcohol and/or water. Rats underwent a cue-primed reinstatement test and brains were processed for c-fos mRNA expression. While both sexes decreased oxycodone intake if they had access to alcohol, and decreased alcohol intake if they had access to oxycodone, only female oxycodone + alcohol rats exhibited decreased demand elasticity and increased cue-primed reinstatement. Alcohol consumption increased the number of basolateral and central amygdala neurons activated during sucrose and oxycodone reinstatement and the number of ventral and dorsal striatum neurons engaged by sucrose reinstatement. Nucleus accumbens shell dopamine 1 receptor expressing neurons displayed activation patterns consistent with oxycodone reinstatement. Thus, alcohol alters the motivation to seek oxycodone in a sex-dependent manner and the neural circuitry engaged by cue-primed reinstatement of sucrose and oxycodone-seeking., (© 2023. The Author(s).)
- Published
- 2023
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8. Voluntary alcohol intake alters the motivation to seek intravenous oxycodone and neuronal activation during the reinstatement of oxycodone and sucrose seeking.
- Author
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Wilkinson CS, Blount HL, Davis S, Rojas G, Wu L, Murphy NP, Schwendt M, and Knackstedt LA
- Abstract
Opioid-alcohol polysubstance use is prevalent and worsens treatment outcomes. Here we assessed whether co-consumption of oxycodone and alcohol would influence intake of one another, demand for oxycodone, and the neurocircuitry underlying cue-primed reinstatement of oxycodone-seeking. Male and female rats underwent oxycodone intravenous self-administration (IVSA) with access to either alcohol (20% v/v) and water or only water immediately after the IVSA session. Next, economic demand for intravenous oxycodone was assessed while access to alcohol and/or water continued. Control rats self-administered sucrose followed by access to alcohol and/or water. Rats underwent extinction training and brains were processed for c-fos mRNA expression immediately following a cue-primed reinstatement test. While both sexes decreased oxycodone intake if they had access to alcohol, and decreased alcohol intake if they had access to oxycodone, female oxycodone+alcohol rats exhibited decreased demand elasticity for intravenous oxycodone and increased cue-primed reinstatement while male rats did not. Spontaneous withdrawal signs were correlated with oxycodone intake while alcohol intake was correlated with anxiety-like behavior. Alcohol consumption increased the number of basolateral and central amygdala neurons activated during sucrose and oxycodone reinstatement and the number of ventral and dorsal striatum neurons engaged by sucrose reinstatement. Nucleus accumbens shell dopamine 1 receptor containing neurons displayed activation patterns consistent with oxycodone reinstatement. Thus, alcohol alters the motivation to seek oxycodone in a sex-dependent manner and alters the neural circuitry engaged by cue-primed reinstatement of sucrose and oxycodone-seeking., Competing Interests: Competing Interests The authors have nothing to disclose.
- Published
- 2023
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9. PLSCR1 is a cell-autonomous defence factor against SARS-CoV-2 infection.
- Author
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Xu D, Jiang W, Wu L, Gaudet RG, Park ES, Su M, Cheppali SK, Cheemarla NR, Kumar P, Uchil PD, Grover JR, Foxman EF, Brown CM, Stansfeld PJ, Bewersdorf J, Mothes W, Karatekin E, Wilen CB, and MacMicking JD
- Subjects
- Animals, Humans, Mice, Antibodies, Neutralizing immunology, Antibodies, Viral immunology, Chiroptera, Exome Sequencing, Hepatocytes immunology, Hepatocytes metabolism, Interferon-gamma immunology, Lung immunology, Lung metabolism, Membrane Fusion, Virus Internalization, COVID-19 immunology, COVID-19 metabolism, COVID-19 prevention & control, COVID-19 virology, Phospholipid Transfer Proteins chemistry, Phospholipid Transfer Proteins genetics, Phospholipid Transfer Proteins immunology, Phospholipid Transfer Proteins metabolism, SARS-CoV-2 classification, SARS-CoV-2 immunology, SARS-CoV-2 metabolism, SARS-CoV-2 pathogenicity
- Abstract
Understanding protective immunity to COVID-19 facilitates preparedness for future pandemics and combats new SARS-CoV-2 variants emerging in the human population. Neutralizing antibodies have been widely studied; however, on the basis of large-scale exome sequencing of protected versus severely ill patients with COVID-19, local cell-autonomous defence is also crucial
1-4 . Here we identify phospholipid scramblase 1 (PLSCR1) as a potent cell-autonomous restriction factor against live SARS-CoV-2 infection in parallel genome-wide CRISPR-Cas9 screens of human lung epithelia and hepatocytes before and after stimulation with interferon-γ (IFNγ). IFNγ-induced PLSCR1 not only restricted SARS-CoV-2 USA-WA1/2020, but was also effective against the Delta B.1.617.2 and Omicron BA.1 lineages. Its robust activity extended to other highly pathogenic coronaviruses, was functionally conserved in bats and mice, and interfered with the uptake of SARS-CoV-2 in both the endocytic and the TMPRSS2-dependent fusion routes. Whole-cell 4Pi single-molecule switching nanoscopy together with bipartite nano-reporter assays found that PLSCR1 directly targeted SARS-CoV-2-containing vesicles to prevent spike-mediated fusion and viral escape. A PLSCR1 C-terminal β-barrel domain-but not lipid scramblase activity-was essential for this fusogenic blockade. Our mechanistic studies, together with reports that COVID-associated PLSCR1 mutations are found in some susceptible people3,4 , identify an anti-coronavirus protein that interferes at a late entry step before viral RNA is released into the host-cell cytosol., (© 2023. The Author(s).)- Published
- 2023
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10. Structure Design for Ultrahigh Power Density Proton Exchange Membrane Fuel Cell.
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Zhang G, Wu L, Tongsh C, Qu Z, Wu S, Xie B, Huo W, Du Q, Wang H, An L, Wang N, Xuan J, Chen W, Xi F, Wang Z, and Jiao K
- Abstract
Next-generation ultrahigh power density proton exchange membrane fuel cells rely not only on high-performance membrane electrode assembly (MEA) but also on an optimal cell structure. To this end, this work comprehensively investigates the cell performance under various structures, and it is revealed that there is unexploited performance improvement in structure design because its positive effect enhancing gas supply is often inhibited by worse proton/electron conduction. Utilizing fine channel/rib or the porous flow field is feasible to eliminate the gas diffusion layer (GDL) and hence increase the power density significantly due to the decrease of cell thickness and gas/electron transfer resistances. The cell structure combining fine channel/rib, GDL elimination and double-cell structure is believed to increase the power density from 4.4 to 6.52 kW L
-1 with the existing MEA, showing nearly equal importance with the new MEA development in achieving the target of 9.0 kW L-1 ., (© 2023 Wiley-VCH GmbH.)- Published
- 2023
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11. Porous Flow Field for Next-Generation Proton Exchange Membrane Fuel Cells: Materials, Characterization, Design, and Challenges.
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Zhang G, Qu Z, Tao WQ, Wang X, Wu L, Wu S, Xie X, Tongsh C, Huo W, Bao Z, Jiao K, and Wang Y
- Abstract
Porous flow fields distribute fuel and oxygen for the electrochemical reactions of proton exchange membrane (PEM) fuel cells through their pore network instead of conventional flow channels. This type of flow fields has showed great promises in enhancing reactant supply, heat removal, and electrical conduction, reducing the concentration performance loss and improving operational stability for fuel cells. This review presents the research and development progress of porous flow fields with insights for next-generation PEM fuel cells of high power density (e.g., ∼9.0 kW L
-1 ). Materials, fabrication methods, fundamentals, and fuel cell performance associated with porous flow fields are discussed in depth. Major challenges are described and explained, along with several future directions, including separated gas/liquid flow configurations, integrated porous structure, full morphology modeling, data-driven methods, and artificial intelligence-assisted design/optimization.- Published
- 2023
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12. The Protective Effect of SLNP on Hepatic Fibrosis Induced by Thioacetamide in Rats.
- Author
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Wu L, Liu J, Zheng C, Ma H, Cao X, Huang Z, and Tian K
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- Rats, Animals, Thioacetamide toxicity, Thioacetamide metabolism, Hydroxyproline adverse effects, Hydroxyproline metabolism, Signal Transduction, Liver Cirrhosis chemically induced, Liver Cirrhosis drug therapy, Liver, Superoxide Dismutase adverse effects, Superoxide Dismutase metabolism, RNA, Messenger metabolism, Adenosine Triphosphatases adverse effects, Adenosine Triphosphatases metabolism, Transforming Growth Factor beta1 metabolism, Non-alcoholic Fatty Liver Disease metabolism
- Abstract
Introduction: The incidence of non-alcoholic fatty liver disease (NAFLD) has increased in recent years. Hepatic fibrosis (HF) is an important step in the progression of NAFLD to cirrhosis and even carcinoma and is also recognized as a possible reversal phase., Aims: We previously found that the aqueous extract of Sedum Lineare Thunb. has hepatoprotective effects. This study investigated the hepatoprotective effect and mechanism of the Sedum Lineare Thunb. n-butanol phase (SLNP) on HF in rats., Methods: Animals were intraperitoneally injected with thioacetamide solution twice a week for 8 weeks to prepare an HF model and were administered the corresponding drugs or an equal volume of normal saline by intragastric administration once a day for 8 weeks. Liver function, hydroxyproline and malondialdehyde (MDA) content, superoxide dismutase (SOD), Na
+ -K+- ATPase, and Ca2+ -Mg2+ -ATPase were analyzed using colorimetric methods. Moreover, mRNA expression and protein levels in the liver tissue were detected via quantitative polymerase chain reaction and western blotting, respectively., Results: The results showed that SLNP could effectively improve the liver function of rats with HF and significantly reduce the content of hydroxyproline; the mRNA expression and protein levels of alpha-smooth muscle actin (α-SMA), collagen I, III, and IV, transforming growth factor beta 1 (TGF-β1), Smad2/3, and Smad4 were also significantly reduced. Simultaneously, SLNP significantly increased the activities of SOD, Na+ -K+- ATPase, and Ca2+ -Mg2+ -ATPase in the rat liver tissues, whereas it reduced the levels of MDA and SOD in the serum and liver tissues., Conclusion: This study revealed that SLNP elicits an anti-fibrotic effect by inhibiting oxidative stress and stellate cell activation, thereby reducing the formation and deposition of the extracellular matrix. The TGF-β1/Smads signaling pathway may be involved in this process., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)- Published
- 2023
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13. Epigenetically suppressed tumor cell intrinsic STING promotes tumor immune escape.
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Zheng H, Wu L, Xiao Q, Meng X, Hafiz A, Yan Q, Lu R, and Cao J
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- Humans, Mice, Animals, Membrane Proteins genetics, Membrane Proteins metabolism, Histone Demethylases, DNA, Tumor Escape, Colonic Neoplasms genetics
- Abstract
DNA sensing through the cGAS-STING pathway plays an important role in cancer immunosurveillance. Pharmaceutical activation of STING in the tumor environment is considered an attractive approach to induce anti-tumor immunity, but had limited efficacy in the clinic. Several studies have found that STING is epigenetically silenced in many tumors, including colon cancer. This suggests that STING silencing in tumor cells contributes to immune escape and may limit the application of STING agonists. We previously found that inhibition of the KDM5 family histone demethylases restored STING expression in human breast cancer cells and activated the cGAS-STING pathway. In this study, we used MC38 and CT26 syngeneic mouse colorectal cancer models to show that loss of STING in tumor cells accelerates tumor growth. KDM5 inhibitors activate STING expression in mouse colorectal cancer cells and suppress colon cancer growth in immune competent mice in a STING-dependent manner. This study highlights KDM5 inhibitors as novel immune modulators in cancer therapies., Competing Interests: Conflict of interest The authors declare no conflict of Interest. The authors declare no potential conflicts of interest., (Copyright © 2022 The Authors. Published by Elsevier Masson SAS.. All rights reserved.)
- Published
- 2023
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14. Individual differences in cocaine seeking during voluntary abstinence predicts cocaine relapse and the circuitry mediating relapse.
- Author
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Padovan-Hernandez Y, Rojas G, Wu L, and Knackstedt LA
- Subjects
- Male, Rats, Animals, Rats, Sprague-Dawley, Ceftriaxone pharmacology, Individuality, Extinction, Psychological, Self Administration, Recurrence, Cues, Sucrose pharmacology, Cocaine, Cocaine-Related Disorders
- Abstract
Rationale: There are no FDA-approved treatments to facilitate recovery from cocaine use disorder. Contingency management offers non-drug reinforcers to encourage abstinence and is effective at reducing drug seeking during treatment, but once discontinued, relapse rates increase., Objectives: We sought to establish a choice-based rodent model of voluntary abstinence (VA) from cocaine to test the ability of ceftriaxone, an antibiotic consistently shown to prevent relapse to cocaine seeking in rodents, to attenuate relapse after discontinuation of VA, and to investigate relapse-induced neuronal activation via c-Fos expression., Methods: Male Sprague-Dawley rats self-administered sucrose pellets for 5 days and intravenous cocaine for 12 days. Rats then underwent 14 days of voluntary or forced abstinence. VA sessions entailed the opportunity to choose between sucrose and cocaine delivery in discrete trials (20 trials/day). Ceftriaxone (or vehicle) was administered during the last 7 days of abstinence. During a relapse test, only the cocaine-paired lever was available and presses on the lever delivered cocaine-paired cues., Results: There were more presses on the sucrose lever during VA, but cocaine intake did not decline to zero. Ceftriaxone had no effect on cocaine intake during VA. Neither ceftriaxone nor VA reduced cocaine seeking during the relapse test, and cocaine intake during VA positively correlated with cocaine seeking during the test in vehicle-treated animals. Relapse-induced c-Fos expression was found to be greater in the ventral orbitofrontal cortex following VA., Conclusions: Sucrose availability leads to a decrease in, but not cessation of, cocaine seeking and a differential engagement of the circuitry underlying relapse., (© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
- Published
- 2022
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15. Circular RNA profile in Graves' disease and potential function of hsa_circ_0090364.
- Author
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Jiang Z, Huang L, Chen L, Zhou J, Liang B, Bai X, Wu L, and Huang H
- Abstract
Background: Graves' disease is a common autoimmune disease. Cytokines and their signalling pathways play a major part in the pathogenesis of Graves' disease; however, the underlying mechanism needs to be clarified., Aims: The aim of this study was to explore whether circular RNAs participate in the immunological pathology of Graves' disease via cytokine-related signalling pathways., Methods: Bioinformatics analysis was performed to identify differentially expressed circular RNAs and their targets and associated pathways. A total of three patients with Graves' disease and three sex- and age-matched healthy controls were enrolled for validation with microarray analysis and real-time quantitative PCR (qPCR). An additional 24 patients with Graves' disease and 24 gender- and age-matched controls were included for validation by real-time fluorescent qPCR. Flow cytometry and CCK8 assays were used to detect the apoptotic and proliferative levels of Jurkat cells (T lymphocytes) with the silenced expression of circRNA. ELISA was performed to detect the growth and apoptosis-related proteins. The competition mechanism of endogenous RNA was explored by real-time fluorescence qPCR., Results: A total of 366 significantly differentially expressed circular RNAs were identified in the Graves' disease group compared to healthy controls. The level of hsa_circ_0090364 was elevated in Graves' disease patients and positively correlated with thyroid-stimulating hormone receptor antibodies. Further analyses suggested that hsa_circ_0090364 may regulate the JAK-STAT pathway via the hsa-miR-378a-3p/IL-6ST/IL21R axis to promote cell growth., Conclusions: These results provide novel clues into the pathophysiological mechanisms of Graves' disease and potential targets for drug treatment.
- Published
- 2022
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16. HMCES protects immunoglobulin genes specifically from deletions during somatic hypermutation.
- Author
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Wu L, Shukla V, Yadavalli AD, Dinesh RK, Xu D, Rao A, and Schatz DG
- Subjects
- Animals, Cytidine Deaminase genetics, Cytidine Deaminase metabolism, DNA genetics, DNA-Binding Proteins, Immunoglobulin Class Switching genetics, Mice, Uracil, Genes, Immunoglobulin genetics, Somatic Hypermutation, Immunoglobulin genetics
- Abstract
Somatic hypermutation (SHM) produces point mutations in immunoglobulin (Ig) genes in B cells when uracils created by the activation-induced deaminase are processed in a mutagenic manner by enzymes of the base excision repair (BER) and mismatch repair (MMR) pathways. Such uracil processing creates DNA strand breaks and is susceptible to the generation of deleterious deletions. Here, we demonstrate that the DNA repair factor HMCES strongly suppresses deletions without significantly affecting other parameters of SHM in mouse and human B cells, thereby facilitating the production of antigen-specific antibodies. The deletion-prone repair pathway suppressed by HMCES operates downstream from the uracil glycosylase UNG and is mediated by the combined action of BER factor APE2 and MMR factors MSH2, MSH6, and EXO1. HMCES's ability to shield against deletions during SHM requires its capacity to form covalent cross-links with abasic sites, in sharp contrast to its DNA end-joining role in class switch recombination but analogous to its genome-stabilizing role during DNA replication. Our findings lead to a novel model for the protection of Ig gene integrity during SHM in which abasic site cross-linking by HMCES intercedes at a critical juncture during processing of vulnerable gapped DNA intermediates by BER and MMR enzymes., (© 2022 Wu et al.; Published by Cold Spring Harbor Laboratory Press.)
- Published
- 2022
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17. Elastic-Electric Coefficient-Sensitive Hydrogel Sensors toward Sweat Detection.
- Author
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Shen B, Peng W, Su B, Wu L, Liu Z, Xu H, Zhao J, Feng P, and Li F
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- Electric Conductivity, Electricity, Lactic Acid analysis, Hydrogels chemistry, Sweat chemistry
- Abstract
The complex and multivariate biological systems and environment are challenging the development of related detection and analysis. It calls for the multiresponsive and facile sensing material and method for multi-analyte identification. In this work, we proposed an elastic-electric coefficient sensitivity strategy with hydrogel [amino trimethylene phosphonic acid-assisted poly(vinyl alcohol)] to achieve discriminative analysis of various chemicals. Elastic sensitivity based on the Hofmeister effect and electric sensitivity based on hydrated ion migration are explored in detail. With a rational design, the elastic-electric coefficient-sensitive hydrogel can qualify and quantify various kinds of chemicals (cations, anions, amino acids, saccharides, and lactate). The facile hydrogel sensor realized complicated sweat recognition and can be used in various applications such as environment monitoring, disease diagnosis, and athletic training optimization.
- Published
- 2022
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18. Overexpression of miR-224-5p alleviates allergic rhinitis in mice via the TLR4/MyD88/NF-κB pathway.
- Author
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Wu J, Wu L, Zhang L, Xu H, Wang M, Wang L, Chen J, and Sun K
- Subjects
- Animals, Disease Models, Animal, Male, Mice, Mice, Inbred BALB C, MicroRNAs metabolism, Myeloid Differentiation Factor 88 genetics, Myeloid Differentiation Factor 88 metabolism, NF-kappa B genetics, NF-kappa B metabolism, Toll-Like Receptor 4 genetics, Toll-Like Receptor 4 metabolism, Gene Expression Regulation, MicroRNAs genetics, Rhinitis, Allergic genetics, Signal Transduction
- Abstract
Inflammatory allergic reaction is the main cause of allergic rhinitis (AR). Previous studies indicated that miR-224-5p was downregulated in the nasal mucosa of patients with AR, while the function of miR-224-5p in AR remains unclear. To explore this issue, AR mouse model was established using ovalbumin (OVA). For treatment group, lentivirus (LV)-miR-224-5p or its control was intranasally administrated to AR mice. miR-224-5p expression was detected by reverse transcription-quantitative PCR, followed by assessing the immunoglobulin E (IgE) level. Pathological alterations in nasal mucosa were detected using Hematoxylin-Eosin staining and Sirius red staining, followed by assessing the levels of inflammatory cells and factors. The NLRP3 inflammasome and TLR4/MyD88/NF-κB pathway were measured by Western blot, and then the relationship between miR-224-5p and toll-like receptor 4 (TLR4) was verified. The results showed that miR-224-5p was significantly decreased in nasal mucosa of AR mice. AR mice exhibited increased sneezing and nasal rubbing events, IgE level in serum, and pathological alterations in nasal mucosa, while overexpression of miR-224-5p markedly attenuated these changes. The levels of inflammatory cells in nasal lavage fluid and pro-inflammatory factors in serum and nasal mucosa were significantly increased in AR mice, which were reduced by miR-224-5p overexpression. Of note, LV-miR-224-5p treatment remarkably suppressed the activations of NLRP3 inflammasome and the TLR4/MyD88/NF-κB pathway in AR mice. Furthermore, miR-224-5p could bind to 3'-untranslated region (3'-UTR) of TLR4 and negatively regulate TLR4 level. Overall, we conclude that miR-224-5p may relieve AR by negatively regulating TLR4/MyD88/NF-κB pathway, indicating that miR-224-5p may be a promising target for AR treatment.
- Published
- 2021
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19. Increased mGlu5 mRNA expression in BLA glutamate neurons facilitates resilience to the long-term effects of a single predator scent stress exposure.
- Author
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Shallcross J, Wu L, Wilkinson CS, Knackstedt LA, and Schwendt M
- Subjects
- Animals, Basolateral Nuclear Complex, Extinction, Psychological, Fear, Glutamic Acid, In Situ Hybridization, Fluorescence, Male, Odorants, RNA, Messenger, Rats, Rats, Sprague-Dawley, Reflex, Startle, Stress Disorders, Post-Traumatic, Neurons
- Abstract
Post-traumatic stress disorder (PTSD) develops in a subset of individuals exposed to a trauma with core features being increased anxiety and impaired fear extinction. To model the heterogeneity of PTSD behavioral responses, we exposed male Sprague-Dawley rats to predator scent stress once for 10 min and then assessed anxiety-like behavior 7 days later using the elevated plus maze and acoustic startle response. Rats displaying anxiety-like behavior in both tasks were classified as stress Susceptible, and rats exhibiting behavior no different from un-exposed Controls were classified as stress Resilient. In Resilient rats, we previously found increased mRNA expression of mGlu5 in the amygdala and prefrontal cortex (PFC) and CB1 in the amygdala. Here, we performed fluorescent in situ hybridization (FISH) to determine the subregion and cell-type-specific expression of these genes in Resilient rats 3 weeks after TMT exposure. Resilient rats displayed increased mGlu5 mRNA expression in the basolateral amygdala (BLA) and the infralimbic and prelimbic regions of the PFC and increased BLA CB1 mRNA. These increases were limited to glutamatergic cells. To test the necessity of mGlu5 for attenuating TMT-conditioned contextual fear 3 weeks after TMT conditioning, intra-BLA infusions of the mGlu5 negative allosteric modulator MTEP were administered prior to context re-exposure. In TMT-exposed Resilient rats, but not Controls, MTEP increased freezing on the day of administration, which extinguished over two additional un-drugged sessions. These results suggest that increased mGlu5 expression in BLA glutamate neurons contributes to the behavioral flexibility observed in stress-Resilient animals by facilitating a capacity for extinguishing contextual fear associations., (© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
- Published
- 2021
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20. MC-100093, a Novel β -Lactam Glutamate Transporter-1 Enhancer Devoid of Antimicrobial Properties, Attenuates Cocaine Relapse in Rats.
- Author
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Knackstedt LA, Wu L, Rothstein J, Vidensky S, Gordon J, Ramanjulu M, Dunman P, Blass B, Childers W, and Abou-Gharbia M
- Subjects
- Animals, Rats, Male, beta-Lactams pharmacology, beta-Lactams therapeutic use, Self Administration, Nucleus Accumbens drug effects, Nucleus Accumbens metabolism, Recurrence, Anti-Infective Agents pharmacology, Anti-Infective Agents pharmacokinetics, Anti-Infective Agents therapeutic use, Drug-Seeking Behavior drug effects, Excitatory Amino Acid Transporter 2 metabolism, Cocaine pharmacology, Cocaine-Related Disorders drug therapy, Cocaine-Related Disorders metabolism, Rats, Sprague-Dawley
- Abstract
Cocaine use disorder currently lacks Food and Drug Administration-approved treatments. In rodents, the glutamate transporter-1 (GLT-1) is downregulated in the nucleus accumbens after cocaine self-administration, and increasing the expression and function of GLT-1 reduces the reinstatement of cocaine seeking. The β -lactam antibiotic ceftriaxone upregulates GLT-1 and attenuates cue- and cocaine-induced cocaine seeking without affecting motivation for natural rewards. Although ceftriaxone shows promise for treating cocaine use disorder, it possesses characteristics that limit successful translation from bench to bedside, including poor brain penetration, a lack of oral bioavailability, and a risk of bacterial resistance when used chronically. Thus, we aimed to develop novel molecules that retained the GLT-1-enhancing effects of ceftriaxone but displayed superior drug-like properties. Here, we describe a new monocyclic β -lactam, MC-100093, as a potent upregulator of GLT-1 that is orally bioavailable and devoid of antimicrobial properties. MC-100093 was synthesized and tested in vitro and in vivo to determine physiochemical, pharmacokinetic, and pharmacodynamic properties. Next, adult male rats underwent cocaine self-administration and extinction training. During extinction training, rats received one of four doses of MC-100093 for 6-8 days prior to a single cue-primed reinstatement test. Separate cohorts of rats were used to assess nucleus accumbens GLT-1 expression and MC-100093 effects on sucrose self-administration. We found that 50 mg/kg MC-100093 attenuated cue-primed reinstatement of cocaine seeking while upregulating GLT-1 expression in the nucleus accumbens core. This dose did not produce sedation, nor did it decrease sucrose consumption or body weight. Thus, MC-100093 represents a potential treatment to reduce cocaine relapse. SIGNIFICANCE STATEMENT: Increasing GLT-1 activity reliably reduces drug-seeking across classes of drugs; however, existing GLT1-enhancers have side effects and lack oral bioavailability. To address this issue, novel GLT-1 enhancers were synthesized, and the compound with the most favorable pharmacokinetic and pharmacodynamic properties, MC-100093, was selected for further testing. MC-100093 attenuated cued cocaine seeking without reducing food seeking or locomotion and upregulated GLT-1 expression in the nucleus accumbens., (Copyright © 2021 by The American Society for Pharmacology and Experimental Therapeutics.)
- Published
- 2021
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21. 5-Fluorouracil efficacy requires anti-tumor immunity triggered by cancer-cell-intrinsic STING.
- Author
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Tian J, Zhang D, Kurbatov V, Wang Q, Wang Y, Fang D, Wu L, Bosenberg M, Muzumdar MD, Khan S, Lu Q, Yan Q, and Lu J
- Subjects
- Animals, Cell Line, Tumor, Cells, Cultured, Female, Humans, Interferon Type I metabolism, Membrane Proteins genetics, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Nucleotidyltransferases metabolism, T-Lymphocytes immunology, Tumor Microenvironment drug effects, Antineoplastic Agents pharmacology, Drug Resistance, Neoplasm, Fluorouracil pharmacology, Membrane Proteins metabolism, Tumor Microenvironment immunology
- Abstract
5-Fluorouracil (5-FU) is a widely used chemotherapeutic drug, but the mechanisms underlying 5-FU efficacy in immunocompetent hosts in vivo remain largely elusive. Through modeling 5-FU response of murine colon and melanoma tumors, we report that effective reduction of tumor burden by 5-FU is dependent on anti-tumor immunity triggered by the activation of cancer-cell-intrinsic STING. While the loss of STING does not induce 5-FU resistance in vitro, effective 5-FU responsiveness in vivo requires cancer-cell-intrinsic cGAS, STING, and subsequent type I interferon (IFN) production, as well as IFN-sensing by bone-marrow-derived cells. In the absence of cancer-cell-intrinsic STING, a much higher dose of 5-FU is needed to reduce tumor burden. 5-FU treatment leads to increased intratumoral T cells, and T-cell depletion significantly reduces the efficacy of 5-FU in vivo. In human colorectal specimens, higher STING expression is associated with better survival and responsiveness to chemotherapy. Our results support a model in which 5-FU triggers cancer-cell-initiated anti-tumor immunity to reduce tumor burden, and our findings could be harnessed to improve therapeutic effectiveness and toxicity for colon and other cancers., (© 2021 The Authors.)
- Published
- 2021
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22. miR-3574 ameliorates intermittent hypoxia-induced cardiomyocyte injury through inhibiting Axin1.
- Author
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Chen Q, Lin G, Chen Y, Li C, Wu L, Hu X, and Lin Q
- Subjects
- Animals, Cell Line, Cell Survival physiology, Rats, Axin Protein metabolism, Cell Hypoxia physiology, Hypoxia metabolism, MicroRNAs metabolism, Myocytes, Cardiac metabolism, Signal Transduction physiology
- Abstract
Objective: miRNAs play critical roles in the regulation of many cardiovascular diseases. However, its role and potential mechanism in cardiac injury caused by obstructive sleep apnea (OSA) remain poorly elucidated. In the present study, we aimed to investigate the effects of miR-3574 on cardiomyocyte injury under intermittent hypoxia (IH)., Results: We confirmed that IH inhibited cell viability, induced cell apoptosis and suppressed miR-3574 expression in the H9c2. miR-3574 overexpression could ameliorate the effects of IH on the cell viability and cell apoptosis in the H9c2. Axin1 was a target gene of miR-3574, and miR-3574 overexpression reduced the expression of Axin1. miR-3574 could inhibit the IH-induced cardiomyocyte injury via downregulating Axin1. However, Axin1 could partially reverse these effects of miR-3574., Conclusion: Our study first reveals that miR-3574 could alleviate IH-induced cardiomyocyte injury by targeting Axin1, which may function as a novel and promising therapy target for OSA-associated cardiovascular diseases., Methods: H9c2 were exposed to IH condition. CCK-8 assay was applied to determine cell viability of H9c2. qRT-PCR was conducted to measure the expression level of mRNA and miRNA. Western blot assay was then performed to detect the protein levels. Finally, we used dual-luciferase reporter assay identify the potential target of miR-3574.
- Published
- 2021
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23. Using rat operant delayed match-to-sample task to identify neural substrates recruited with increased working memory load.
- Author
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Gobin C, Wu L, and Schwendt M
- Subjects
- Animals, Cerebral Cortex metabolism, Cerebral Cortex physiology, Male, Protein Kinase C metabolism, Protein Kinase C physiology, Proto-Oncogene Proteins c-fos metabolism, Proto-Oncogene Proteins c-fos physiology, RNA, Messenger metabolism, Rats, Rats, Sprague-Dawley, Conditioning, Operant physiology, Memory, Short-Term physiology
- Abstract
The delayed match-to-sample task (DMS) is used to probe working memory (WM) across species. While the involvement of the PFC in this task has been established, limited information exists regarding the recruitment of broader circuitry, especially under the low- versus high-WM load. We sought to address this question by using a variable-delay operant DMS task. Male Sprague-Dawley rats were trained and tested to determine their baseline WM performance across all (0- to 24-sec) delays. Next, rats were tested in a single DMS test with either 0- or 24-sec fixed delay, to assess low-/high-load WM performance. c - Fos mRNA expression was quantified within cortical and subcortical regions and correlated with WM performance. High WM load up-regulated overall c - Fos mRNA expression within the PrL, as well as within a subset of mGlu5+ cells, with load-dependent, local activation of protein kinase C (PKC) as the proposed underlying molecular mechanism. The PrL activity negatively correlated with choice accuracy during high load WM performance. A broader circuitry, including several subcortical regions, was found to be activated under low and/or high load conditions. These findings highlight the role of mGlu5- and/or PKC-dependent signaling within the PrL, and corresponding recruitment of subcortical regions during high-load WM performance., (© 2020 Gobin et al.; Published by Cold Spring Harbor Laboratory Press.)
- Published
- 2020
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24. Preoperative computed tomography-assessed skeletal muscle index is a novel prognostic factor in patients with hepatocellular carcinoma following hepatectomy: a meta-analysis.
- Author
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Xu L, Jing Y, Zhao C, Zhang Q, Zhao X, Yang J, Wu L, and Yang Y
- Abstract
Background: Recently, several studies have examined the association between preoperative sarcopenia and prognosis evaluation in patients with hepatocellular carcinoma (HCC) undergoing hepatectomy. However, their conclusions remain ambiguous and controversial. Thus, we conducted a meta-analysis to assess the prognostic role of preoperative sarcopenia in patients with HCC undergoing hepatectomy., Methods: We searched the existing literature reporting on the prognostic value of preoperative computed tomography (CT)-assessed sarcopenia for the survival of patients with HCC undergoing hepatectomy. The pooled hazard ratios (HRs) and corresponding 95% confidence intervals (CIs) of overall survival (OS) and disease-free survival (DFS) were used to assess the prognostic value of preoperative sarcopenia in HCC patients. The associations between preoperative sarcopenia and clinicopathological characteristics were also evaluated., Results: A total of six studies with 1,420 patients (including 458 sarcopenia and 962 non-sarcopenia patients) were included in the meta-analysis. The results showed that preoperative sarcopenia was significantly associated with poor OS (HR =1.572, 95% CI: 1.342-1.840, P=0) and shorter DFS (HR =1.544, 95% CI: 1.178-2.024, P=0.002) in patients with HCC undergoing hepatectomy. Preoperative sarcopenia was also significantly related to larger diameter tumors (WMD =0.598, 95% CI: 0.216-0.980, P=0.002). The results of the sensitivity analysis were stable in this meta-analysis. Egger's tests revealed that there was no significant publication bias., Conclusions: Sarcopenia appears to have significant adverse impacts on postoperative outcomes in patients with hepatocellular carcinoma following hepatectomy. However, further large-scale prospective studies are needed to confirm our findings., Competing Interests: Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at: http://dx.doi.org/10.21037/jgo-20-122). The authors have no conflicts of interest to declare., (2020 Journal of Gastrointestinal Oncology. All rights reserved.)
- Published
- 2020
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25. Making ends meet in class switch recombination.
- Author
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Wu L and Schatz DG
- Subjects
- Animals, DNA, B-Lymphocytes, Immunoglobulin Class Switching
- Published
- 2020
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26. Ceftriaxone and mGlu2/3 interactions in the nucleus accumbens core affect the reinstatement of cocaine-seeking in male and female rats.
- Author
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Logan CN, Bechard AR, Hamor PU, Wu L, Schwendt M, and Knackstedt LA
- Subjects
- Animals, Behavior, Addictive drug therapy, Cocaine-Related Disorders drug therapy, Cocaine-Related Disorders metabolism, Dopamine Uptake Inhibitors administration & dosage, Extinction, Psychological drug effects, Extinction, Psychological physiology, Female, Male, Nucleus Accumbens drug effects, Rats, Rats, Sprague-Dawley, Receptors, Metabotropic Glutamate antagonists & inhibitors, Self Administration, Behavior, Addictive metabolism, Ceftriaxone administration & dosage, Cocaine administration & dosage, Nucleus Accumbens metabolism, Receptors, Metabotropic Glutamate metabolism
- Abstract
Rationale: The beta-lactam antibiotic ceftriaxone reliably attenuates the reinstatement of cocaine seeking. While the restoration of nucleus accumbens core (NA core) GLT-1 expression is necessary for ceftriaxone to attenuate reinstatement, AAV-mediated GLT-1 overexpression is not sufficient to attenuate reinstatement and does not prevent glutamate efflux during reinstatement., Aims: Here, we test the hypothesis that ceftriaxone attenuates reinstatement through interactions with glutamate autoreceptors mGlu2 and mGlu3 in the NA core., Methods: Male and female rats self-administered cocaine for 12 days followed by 2-3 weeks of extinction training. During the last 6-10 days of extinction, rats received ceftriaxone (200 mg/kg IP) or vehicle. In experiment 1, rats were killed, and NA core tissue was biotinylated for assessment of total and surface expression of mGlu2 and mGlu3 via western blotting. In experiment 2, we tested the hypothesis that mGlu2/3 signaling is necessary for ceftriaxone to attenuate cue- and cocaine-primed reinstatement by administering bilateral intra-NA core infusion of mGlu2/3 antagonist LY341495 or vehicle immediately prior to reinstatement testing., Results: mGlu2 expression was reduced by cocaine and restored by ceftriaxone. There were no effects of cocaine or ceftriaxone on mGlu3 expression. We observed no effects of estrus on expression of either protein. The antagonism of mGlu2/3 in the NA core during both cue- and cocaine-primed reinstatement tests prevented ceftriaxone from attenuating reinstatement., Conclusions: These results indicate that ceftriaxone's effects depend on mGlu2/3 function and possibly mGlu2 receptor expression. Future work will test this hypothesis by manipulating mGlu2 expression in pathways that project to the NA core.
- Published
- 2020
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27. An anti-UV superhydrophobic material with photocatalysis, self-cleaning, self-healing and oil/water separation functions.
- Author
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Zhu H, Wu L, Meng X, Wang Y, Huang Y, Lin M, and Xia F
- Abstract
In this work, a superhydrophobic material was successfully prepared with a water contact angle of about 155.5° and a rolling-off angle of about 6.8°, which showed superior UV resistance (365 nm, 5.0 ± 0.6 mW cm-2) for an illumination period of 30 h. The degradation of organic dyes, such as Nile red, methyl blue and orange, could be also achieved with our prepared surface. Anti-UV water-repellency was combined with photocatalysis to realize a self-cleaning surface for both dirt removal and organic degradation. Moreover, the reversible changes with superhydrophobicity and superhydrophilicity were induced by the self-healing property on such a surface, contributing to heavy and light oils/water separation. Because of ultra-long UV-resistance, photocatalysis, self-cleaning, self-healing and oil/water separation functions, our reported surface has potential for application in a variety of fields.
- Published
- 2020
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28. Transcription factor binding at Ig enhancers is linked to somatic hypermutation targeting.
- Author
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Dinesh RK, Barnhill B, Ilanges A, Wu L, Michelson DA, Senigl F, Alinikula J, Shabanowitz J, Hunt DF, and Schatz DG
- Subjects
- Animals, Chickens, Genes, Immunoglobulin, Humans, Transcription Factors genetics, Transcription Factors metabolism, Somatic Hypermutation, Immunoglobulin physiology
- Abstract
Secondary diversification of the Ig repertoire occurs through somatic hypermutation (SHM), gene conversion (GCV), and class switch recombination (CSR)-three processes that are initiated by activation-induced cytidine deaminase (AID). AID targets Ig genes at orders of magnitude higher than the rest of the genome, but the basis for this specificity is poorly understood. We have previously demonstrated that enhancers and enhancer-like sequences from Ig genes are capable of stimulating SHM of neighboring genes in a capacity distinct from their roles in increasing transcription. Here, we use an in vitro proteomics approach to identify E-box, MEF2, Ets, and Ikaros transcription factor family members as potential binders of these enhancers. ChIP assays in the hypermutating Ramos B cell line confirmed that many of these factors bound the endogenous Igλ enhancer and/or the IgH intronic enhancer (Eμ) in vivo. Further investigation using SHM reporter assays identified binding sites for E2A and MEF2B in Eμ and demonstrated an association between loss of factor binding and decreases in the SHM stimulating activity of Eμ mutants. Our results provide novel insights into trans-acting factors that dictate SHM targeting and link their activity to specific DNA binding sites within Ig enhancers., (© 2019 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2020
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29. Acquired Resistance to HER2-Targeted Therapies Creates Vulnerability to ATP Synthase Inhibition.
- Author
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Gale M, Li Y, Cao J, Liu ZZ, Holmbeck MA, Zhang M, Lang SM, Wu L, Do Carmo M, Gupta S, Aoshima K, DiGiovanna MP, Stern DF, Rimm DL, Shadel GS, Chen X, and Yan Q
- Subjects
- Animals, Apoptosis, Breast Neoplasms metabolism, Breast Neoplasms pathology, Cell Proliferation, Female, Humans, Mice, Mice, Inbred NOD, Mice, SCID, Oligomycins administration & dosage, Trastuzumab administration & dosage, Tumor Cells, Cultured, Xenograft Model Antitumor Assays, Antineoplastic Combined Chemotherapy Protocols pharmacology, Breast Neoplasms drug therapy, Drug Resistance, Neoplasm drug effects, Enzyme Inhibitors pharmacology, Mitochondrial Proton-Translocating ATPases antagonists & inhibitors, Receptor, ErbB-2 antagonists & inhibitors
- Abstract
Acquired resistance to HER2-targeted therapies occurs frequently in HER2
+ breast tumors and new strategies for overcoming resistance are needed. Here, we report that resistance to trastuzumab is reversible, as resistant cells regained sensitivity to the drug after being cultured in drug-free media. RNA-sequencing analysis showed that cells resistant to trastuzumab or trastuzumab + pertuzumab in combination increased expression of oxidative phosphorylation pathway genes. Despite minimal changes in mitochondrial respiration, these cells exhibited increased expression of ATP synthase genes and selective dependency on ATP synthase function. Resistant cells were sensitive to inhibition of ATP synthase by oligomycin A, and knockdown of ATP5J or ATP5B, components of ATP synthase complex, rendered resistant cells responsive to a low dose of trastuzumab. Furthermore, combining ATP synthase inhibitor oligomycin A with trastuzumab led to regression of trastuzumab-resistant tumors in vivo . In conclusion, we identify a novel vulnerability of cells with acquired resistance to HER2-targeted antibody therapies and reveal a new therapeutic strategy to overcome resistance. SIGNIFICANCE: These findings implicate ATP synthase as a novel potential target for tumors resistant to HER2-targeted therapies., (©2019 American Association for Cancer Research.)- Published
- 2020
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30. Mitochondrial DNA Stress Signalling Protects the Nuclear Genome.
- Author
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Wu Z, Oeck S, West AP, Mangalhara KC, Sainz AG, Newman LE, Zhang XO, Wu L, Yan Q, Bosenberg M, Liu Y, Sulkowski PL, Tripple V, Kaech SM, Glazer PM, and Shadel GS
- Subjects
- Animals, Cell Line, Tumor, Cytosol metabolism, DNA Damage genetics, DNA-Binding Proteins genetics, High Mobility Group Proteins genetics, Interferon-Stimulated Gene Factor 3 genetics, Interferons biosynthesis, Interferons genetics, Membrane Proteins genetics, Membrane Proteins metabolism, Mice, Mice, Knockout, Mice, Nude, NF-kappa B physiology, Nucleotidyltransferases genetics, Nucleotidyltransferases metabolism, Protein Serine-Threonine Kinases genetics, Protein Serine-Threonine Kinases metabolism, Signal Transduction physiology, Cell Nucleus genetics, DNA, Mitochondrial physiology, Genome genetics
- Abstract
The mammalian genome comprises nuclear DNA (nDNA) derived from both parents and mitochondrial DNA (mtDNA) that is maternally inherited and encodes essential proteins required for oxidative phosphorylation. Thousands of copies of the circular mtDNA are present in most cell types that are packaged by TFAM into higher-order structures called nucleoids1. Mitochondria are also platforms for antiviral signalling2 and, due to their bacterial origin, mtDNA and other mitochondrial components trigger innate immune responses and inflammatory pathology
2,3 . We showed previously that instability and cytoplasmic release of mtDNA activates the cGAS-STING-TBK1 pathway resulting in interferon stimulated gene (ISG) expression that promotes antiviral immunity4. Here, we find that persistent mtDNA stress is not associated with basally activated NF-κB signalling or interferon gene expression typical of an acute antiviral response. Instead, a specific subset of ISGs, that includes Parp9 , remains activated by the unphosphorylated form of ISGF3 (U-ISGF3) that enhances nDNA damage and repair responses. In cultured primary fibroblasts and cancer cells, the chemotherapeutic drug doxorubicin causes mtDNA damage and release, which leads to cGAS-STING-dependent ISG activation. In addition, mtDNA stress in TFAM-deficient mouse melanoma cells produces tumours that are more resistant to doxorubicin in vivo . Finally, Tfam+/- mice exposed to ionizing radiation exhibit enhanced nDNA repair responses in spleen. Therefore, we propose that damage to and subsequent release of mtDNA elicits a protective signalling response that enhances nDNA repair in cells and tissues, suggesting mtDNA is a genotoxic stress sentinel., Competing Interests: Competing Interests Statement. The authors have no competing interests to declare with regard to the data presented in the manuscript.- Published
- 2019
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31. Enhanced Capacitance of TiO 2 Nanotubes with a Double-Layer Structure Fabricated in NH 4 F/H 3 PO 4 Mixed Electrolyte.
- Author
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Wu L, Zhang K, Zhu X, Cao S, Niu D, and Feng X
- Abstract
TiO
2 is an attractive electrode material in fast charging/discharging supercapacitors because of its high specific surface area. However, the low capacitance of TiO2 nanotubes as-anodized in the classical electrolyte restricts their further application in supercapacitors. Here, we study the performances of larger-diameter nanotubes with a double-layer structure fabricated in an NH4 F/phosphoric acid (H3 PO4 ) mixed electrolyte. Results show that the double-layer structure increased the specific surface area of nanotubes owing to the cavities between the double layers and the porous structure on walls. After soaking in H3 PO4 aqueous solution for 40 min, the nanotubes anodized in the mixed electrolyte containing 6 wt % H3 PO4 show a specific capacitance of 13.89 mF cm-2 , ∼3.11 times that of the pristine nanotubes in the classical electrolyte. The specific surface area of the soaked nanotubes is up to 113.2 m2 g-1 , which is ∼2.94 times that of the pristine nanotubes. The values of specific surface area of the anodized nanotubes and the soaked nanotubes fabricated in the mixed electrolyte containing 6 wt % H3 PO4 are roughly equal. It demonstrated that the specific surface area increased mainly due to the double-layer structure. The double-layer structure reveals a new strategy to enhance the specific capacitance of TiO2 nanotubes.- Published
- 2019
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32. The effects of clavulanic acid and amoxicillin on cue-primed reinstatement of cocaine seeking.
- Author
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Bechard AR, Hamor PU, Wu L, Schwendt M, and Knackstedt LA
- Subjects
- Amino Acid Transport Systems, Acidic metabolism, Animals, Cues, Excitatory Amino Acid Transporter 2 metabolism, Extinction, Psychological drug effects, Male, Nucleus Accumbens metabolism, Prefrontal Cortex metabolism, Rats, Sprague-Dawley, Amoxicillin administration & dosage, Anti-Bacterial Agents administration & dosage, Clavulanic Acid administration & dosage, Cocaine administration & dosage, Drug-Seeking Behavior drug effects, Nucleus Accumbens drug effects, Prefrontal Cortex drug effects, beta-Lactamase Inhibitors administration & dosage
- Abstract
Research using the cocaine self-administration and reinstatement animal model of relapse finds that the beta-lactam antibiotic, ceftriaxone, attenuates cocaine-primed reinstatement of cocaine seeking and upregulates two proteins that regulate glutamate release and reuptake (xCT and GLT-1, respectively) in the nucleus accumbens core (NAc). We tested three compounds with beta-lactam rings for their ability to attenuate cue-primed reinstatement and increase GLT-1 and xCT expression in the NAc and prefrontal cortex (PFC). Rats self-administered intravenous cocaine for 1 hr/day for 7 days then 6 hrs/day for 10 days. Cue-primed reinstatement tests began after 8-9 days of extinction training. Rats received oral vehicle, clavulanic acid (CA), amoxicillin (AMX), or CA + AMX (Augmentin; AUG) for 5 days prior to testing. Only AMX-treated rats demonstrated a reduction of cocaine-seeking that trended toward significance, warranting future investigation of a wider range of doses. In the NAc, GLT-1a expression was reduced in vehicle-treated rats relative to cocaine-naïve controls and was not restored by AMX or AUG. CA-treated rats reinstated more than vehicle-treated rats and exhibited GLT-1a and xCT expression intermediate between cocaine-naïve controls and vehicle-treated cocaine rats. In agreement with our previous work, cocaine did not decrease PFC GLT-1a expression. Cocaine reduced xCT expression in the PFC that was unchanged by any of the three compounds. These results indicate that AMX may be another beta-lactam that attenuates cocaine relapse. Furthermore, the upregulation of both GLT-1 and xCT in the NAc may be needed to attenuate cocaine seeking. (PsycINFO Database Record (c) 2019 APA, all rights reserved).
- Published
- 2019
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33. Berberine, a Traditional Chinese Medicine, Reduces Inflammation in Adipose Tissue, Polarizes M2 Macrophages, and Increases Energy Expenditure in Mice Fed a High-Fat Diet.
- Author
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Lin J, Cai Q, Liang B, Wu L, Zhuang Y, He Y, and Lin W
- Subjects
- Adipose Tissue drug effects, Animals, China, Diet, High-Fat, Endoribonucleases drug effects, Energy Metabolism drug effects, Inflammation metabolism, Macrophage Activation drug effects, Macrophages drug effects, Macrophages metabolism, Male, Medicine, Chinese Traditional, Mice, Mice, Inbred C57BL, Obesity metabolism, Protein Serine-Threonine Kinases drug effects, Uncoupling Protein 1 drug effects, Adipose Tissue, Brown drug effects, Adipose Tissue, White drug effects, Berberine pharmacology
- Abstract
BACKGROUND The uncoupling protein 1 (UCP1) gene has a role in mitochondrial energy expenditure in brown adipose tissue. This study aimed to investigate the effects of berberine, a benzylisoquinoline alkaloid used in traditional Chinese medicine, on energy expenditure, expression of the UCP1 gene, the cell stress protein inositol-requiring enzyme 1α (IRE1α), apoptosis genes, and macrophage phenotype (M1 and M2) in white and brown adipose tissue in an obese mouse model fed a high-fat diet. MATERIAL AND METHODS Four-week-old C57BL/6J male mice (n=20) were divided into a high-fat diet group, a normal diet group, a group treated with berberine at 100 mg/kg/d in 0.9% normal saline, and a non-treated group. Whole-body fat mass, blood glucose, insulin resistance, and oxygen expenditure during physical activity were measured. After 16 weeks, the mice were euthanized for examination of liver and adipose tissue. The expression of pro-inflammatory cytokines, apoptosis genes, thermogenic genes (including UCP1), and IRE1α, were investigated using immunohistochemistry, Western blot, and quantitative reverse transcription polymerase chain reaction (qRT-PCR), in white and brown adipose tissue. Magnetic cell sorting harvested M1 and M2 macrophages in adipose tissue. Clodronate liposomes were used to inhibit macrophage recruitment. RESULTS Berberine treatment in mice fed a high-fat diet increased energy metabolism, glucose tolerance, and expression of UCP1, and reduced expression of pro-inflammatory cytokines, macrophage recruitment, and resulted in M2 macrophage polarization in white adipose tissue. Polarized M2 macrophages showed reduced expression of apoptotic genes and IRE1α. CONCLUSIONS Berberine improved metabolic function in a mouse model fed a high-fat diet.
- Published
- 2019
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34. On the Interfacial Adhesion between TiO 2 Nanotube Array Layer and Ti Substrate.
- Author
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Cao S, Huang W, Wu L, Tian M, and Song Y
- Abstract
Anodic titania nanotube arrays (TNTAs) with higher aspect ratio are observed to be liable to spontaneous curling or delamination from the underlying titanium (Ti) metal once dried because of the poor interfacial adhesion of the TNTA layer to the underlying Ti, especially when a thin Ti sheet is used. The interfacial adhesion strength was shown to decrease with increasing thickness of the TNTA layer. In this work, although the preparation of TNTAs in a frequently used fluoride-containing solution was completed, different anodization processes were further performed at lower current densities or at lower voltages for a short time in the same electrolyte to increase the adhesion. The mechanical test demonstrated that better adhesion properties have been achieved by applying these anodization posttreatment processes. It is believed that during the fabrication of TNTAs, a large residual stress at the interface of the nanotube layer and the underlying Ti is created. It is the residual stress that leads to the weak interfacial adhesion. The anodization posttreatment processes can reduce or eliminate the residual stress, thereby improving the interfacial adhesion. Further, these processes can also boost the performances of TNTAs for supercapacitors. When the anodization posttreatment processes are implemented at 1 mA cm
-2 or at 10 V for 5 min, considerable improvements in the interfacial adhesion are observed. Particularly, both posttreatment processes are also applicable to the very thin Ti sheet (∼18 μm). The realization of robust and adherent TNTAs grown on very thin Ti sheets can not only significantly improve the volumetric capacitances of TNTAs but also make TNTAs an attractive material in flexible supercapacitor applications.- Published
- 2018
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35. A novel rat model of comorbid PTSD and addiction reveals intersections between stress susceptibility and enhanced cocaine seeking with a role for mGlu5 receptors.
- Author
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Schwendt M, Shallcross J, Hadad NA, Namba MD, Hiller H, Wu L, Krause EG, and Knackstedt LA
- Subjects
- Animals, Anxiety, Behavior, Animal, Brain drug effects, Brain metabolism, Cocaine administration & dosage, Cocaine-Related Disorders metabolism, Comorbidity, Extinction, Psychological drug effects, Fear, Male, Phenotype, Rats, Sprague-Dawley, Resilience, Psychological, Stress Disorders, Post-Traumatic metabolism, Stress, Psychological chemically induced, Stress, Psychological metabolism, Thiazoles administration & dosage, Cocaine-Related Disorders complications, Disease Models, Animal, Drug-Seeking Behavior, Receptor, Metabotropic Glutamate 5 metabolism, Stress Disorders, Post-Traumatic complications, Stress, Psychological complications
- Abstract
PTSD is highly comorbid with cocaine use disorder (CUD), and cocaine users with PTSD + CUD are more resistant to treatment. Here we sought to develop a rat model of PTSD + CUD in order to identify the neurobiological changes underlying such comorbidity and screen potential medications for reducing cocaine seeking in the PTSD population. We utilized a predator scent stress model of PTSD, wherein rats received a single exposure to the fox pheromone 2,5-dihydro-2,4,5-trimethylthiazoline (TMT). One week after TMT exposure, stress-susceptible (susceptible), intermediate, and resilient phenotypes were detected and were consistent with behavioral, corticosterone, and gene expression profiles 3 weeks post TMT. We assessed phenotypic differences in cocaine self-administration, extinction, and cue-primed reinstatement. Susceptible rats exhibited deficits in extinction learning and increased cue-primed reinstatement that was not prevented by Ceftriaxone, an antibiotic that consistently attenuates the reinstatement of cocaine seeking. TMT-exposed resilient rats displayed increased mGlu5 gene expression in the amygdala and medial prefrontal cortex and did not display the enhanced cocaine seeking observed in susceptible rats. Combined treatment with the mGlu5 positive allosteric modulator 3-Cyano-N-(1,3-diphenyl-1 H-pyrazol-5-yl)benzamide (CDPPB), fear extinction, and ceftriaxone prevented the reinstatement of cocaine seeking in susceptible rats with fear extinction an important mediating condition. These results highlight the need for animal models of PTSD to consider stress-responsivity, as only a subset of trauma-exposed individuals develop PTSD and these individuals likely exhibit distinct neurobiological changes compared with trauma-exposed populations who are resilient to stress. This work further identifies glutamate homeostasis and mGlu5 as a target for treating relapse in comorbid PTSD-cocaine addiction.
- Published
- 2018
- Full Text
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36. KDM5 histone demethylases repress immune response via suppression of STING.
- Author
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Wu L, Cao J, Cai WL, Lang SM, Horton JR, Jansen DJ, Liu ZZ, Chen JF, Zhang M, Mott BT, Pohida K, Rai G, Kales SC, Henderson MJ, Hu X, Jadhav A, Maloney DJ, Simeonov A, Zhu S, Iwasaki A, Hall MD, Cheng X, Shadel GS, and Yan Q
- Subjects
- Cell Line, Cytosol metabolism, DNA metabolism, Histone Methyltransferases physiology, Histones physiology, Humans, Immunity, Innate physiology, Immunotherapy, Interferons metabolism, Interferons physiology, MCF-7 Cells, Membrane Proteins metabolism, Signal Transduction, Histone Demethylases physiology, Jumonji Domain-Containing Histone Demethylases physiology, Membrane Proteins physiology, Nuclear Proteins physiology, Repressor Proteins physiology
- Abstract
Cyclic GMP-AMP (cGAMP) synthase (cGAS) stimulator of interferon genes (STING) senses pathogen-derived or abnormal self-DNA in the cytosol and triggers an innate immune defense against microbial infection and cancer. STING agonists induce both innate and adaptive immune responses and are a new class of cancer immunotherapy agents tested in multiple clinical trials. However, STING is commonly silenced in cancer cells via unclear mechanisms, limiting the application of these agonists. Here, we report that the expression of STING is epigenetically suppressed by the histone H3K4 lysine demethylases KDM5B and KDM5C and is activated by the opposing H3K4 methyltransferases. The induction of STING expression by KDM5 blockade triggered a robust interferon response in a cytosolic DNA-dependent manner in breast cancer cells. This response resulted in resistance to infection by DNA and RNA viruses. In human tumors, KDM5B expression is inversely associated with STING expression in multiple cancer types, with the level of intratumoral CD8+ T cells, and with patient survival in cancers with a high level of cytosolic DNA, such as human papilloma virus (HPV)-positive head and neck cancer. These results demonstrate a novel epigenetic regulatory pathway of immune response and suggest that KDM5 demethylases are potential targets for antipathogen treatment and anticancer immunotherapy., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2018
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37. Insights into the Action of Inhibitor Enantiomers against Histone Lysine Demethylase 5A.
- Author
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Horton JR, Liu X, Wu L, Zhang K, Shanks J, Zhang X, Rai G, Mott BT, Jansen DJ, Kales SC, Henderson MJ, Pohida K, Fang Y, Hu X, Jadhav A, Maloney DJ, Hall MD, Simeonov A, Fu H, Vertino PM, Yan Q, and Cheng X
- Subjects
- Amides chemistry, Antineoplastic Agents chemical synthesis, Antineoplastic Agents pharmacology, Cell Line, Tumor, Cell Membrane Permeability, Cyclopropanes chemistry, Humans, Models, Molecular, Molecular Conformation, Pyridines chemical synthesis, Pyridines pharmacology, Stereoisomerism, Structure-Activity Relationship, Tumor Stem Cell Assay, Amides pharmacology, Cyclopropanes pharmacology, Enzyme Inhibitors chemistry, Enzyme Inhibitors pharmacology, Retinoblastoma-Binding Protein 2 antagonists & inhibitors
- Abstract
Isomers of chiral drugs can exhibit marked differences in biological activities. We studied the binding and inhibitory activities of 12 compounds against KDM5A. Among them are two pairs of enantiomers representing two distinct inhibitor chemotypes, namely, ( R)- and ( S)-2-((2-chlorophenyl)(2-(piperidin-1-yl)ethoxy)methyl)-1 H-pyrrolo[3,2- b]pyridine-7-carboxylic acid (compounds N51 and N52) and ( R) - and ( S) -N-(1-(3-isopropyl-1 H-pyrazole-5-carbonyl)pyrrolidin-3-yl)cyclopropanecarboxamide (compounds N54 and N55). In vitro, the S enantiomer of the N51/N52 pair (N52) and the R enantiomer of the N54/N55 pair (N54) exhibited about 4- to 5-fold greater binding affinity. The more potent enzyme inhibition of KDM5A by the R-isoform for the cell-permeable N54/N55 pair translated to differences in growth inhibitory activity. We determined structures of the KDM5A catalytic domain in complex with all 12 inhibitors, which revealed the interactions (or lack thereof) responsible for the differences in binding affinity. These results provide insights to guide improvements in binding potency and avenues for development of cell permeable inhibitors of the KDM5 family.
- Published
- 2018
- Full Text
- View/download PDF
38. Rab18 promotes lipid droplet (LD) growth by tethering the ER to LDs through SNARE and NRZ interactions.
- Author
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Xu D, Li Y, Wu L, Li Y, Zhao D, Yu J, Huang T, Ferguson C, Parton RG, Yang H, and Li P
- Subjects
- 3T3-L1 Cells, Animals, Endoplasmic Reticulum genetics, Mice, SNARE Proteins genetics, rab GTP-Binding Proteins genetics, Endoplasmic Reticulum metabolism, Lipid Droplets metabolism, SNARE Proteins metabolism, rab GTP-Binding Proteins metabolism
- Abstract
Lipid incorporation from endoplasmic reticulum (ER) to lipid droplet (LD) is important in controlling LD growth and intracellular lipid homeostasis. However, the molecular link mediating ER and LD cross talk remains elusive. Here, we identified Rab18 as an important Rab guanosine triphosphatase in controlling LD growth and maturation. Rab18 deficiency resulted in a drastically reduced number of mature LDs and decreased lipid storage, and was accompanied by increased ER stress. Rab3GAP1/2, the GEF of Rab18, promoted LD growth by activating and targeting Rab18 to LDs. LD-associated Rab18 bound specifically to the ER-associated NAG-RINT1-ZW10 (NRZ) tethering complex and their associated SNAREs (Syntaxin18, Use1, BNIP1), resulting in the recruitment of ER to LD and the formation of direct ER-LD contact. Cells with defects in the NRZ/SNARE complex function showed reduced LD growth and lipid storage. Overall, our data reveal that the Rab18-NRZ-SNARE complex is critical protein machinery for tethering ER-LD and establishing ER-LD contact to promote LD growth., (© 2018 Xu et al.)
- Published
- 2018
- Full Text
- View/download PDF
39. KDM5 lysine demethylases are involved in maintenance of 3'UTR length.
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Blair LP, Liu Z, Labitigan RL, Wu L, Zheng D, Xia Z, Pearson EL, Nazeer FI, Cao J, Lang SM, Rines RJ, Mackintosh SG, Moore CL, Li W, Tian B, Tackett AJ, and Yan Q
- Subjects
- Breast Neoplasms genetics, Cyclin D1 genetics, Cyclin D1 metabolism, DEAD-box RNA Helicases genetics, DEAD-box RNA Helicases metabolism, Female, Humans, Jumonji Domain-Containing Histone Demethylases genetics, MCF-7 Cells, Neoplasm Proteins genetics, Nuclear Proteins genetics, Repressor Proteins genetics, Retinoblastoma-Binding Protein 2 genetics, Retinoblastoma-Binding Protein 2 metabolism, Ribonuclease III genetics, Ribonuclease III metabolism, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins metabolism, 3' Untranslated Regions, Breast Neoplasms enzymology, Jumonji Domain-Containing Histone Demethylases metabolism, Neoplasm Proteins metabolism, Nuclear Proteins metabolism, Repressor Proteins metabolism
- Abstract
The complexity by which cells regulate gene and protein expression is multifaceted and intricate. Regulation of 3' untranslated region (UTR) processing of mRNA has been shown to play a critical role in development and disease. However, the process by which cells select alternative mRNA forms is not well understood. We discovered that the Saccharomyces cerevisiae lysine demethylase, Jhd2 (also known as KDM5), recruits 3'UTR processing machinery and promotes alteration of 3'UTR length for some genes in a demethylase-dependent manner. Interaction of Jhd2 with both chromatin and RNA suggests that Jhd2 affects selection of polyadenylation sites through a transcription-coupled mechanism. Furthermore, its mammalian homolog KDM5B (also known as JARID1B or PLU1), but not KDM5A (also known as JARID1A or RBP2), promotes shortening of CCND1 transcript in breast cancer cells. Consistent with these results, KDM5B expression correlates with shortened CCND1 in human breast tumor tissues. In contrast, both KDM5A and KDM5B are involved in the lengthening of DICER1 . Our findings suggest both a novel role for this family of demethylases and a novel targetable mechanism for 3'UTR processing.
- Published
- 2016
- Full Text
- View/download PDF
40. An easy and efficient inducible CRISPR/Cas9 platform with improved specificity for multiple gene targeting.
- Author
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Cao J, Wu L, Zhang SM, Lu M, Cheung WK, Cai W, Gale M, Xu Q, and Yan Q
- Subjects
- Bacterial Proteins metabolism, CRISPR-Associated Protein 9, Cell Line, Clustered Regularly Interspaced Short Palindromic Repeats, Endonucleases metabolism, Gene Expression, Gene Knockout Techniques, Gene Order, Gene Silencing, Genes, Reporter, Genetic Vectors genetics, Humans, Promoter Regions, Genetic, RNA, Guide, CRISPR-Cas Systems, Retinoblastoma-Binding Protein 2 deficiency, CRISPR-Cas Systems, Gene Targeting methods, Gene Targeting standards
- Abstract
The CRISPR/Cas9 system is a powerful genome editing tool and has been widely used for biomedical research. However, many challenges, such as off-target effects and lack of easy solutions for multiplex targeting, are still limiting its applications. To overcome these challenges, we first developed a highly efficient doxycycline-inducible Cas9-EGFP vector. This vector allowed us to track the cells for uniform temporal control and efficient gene disruption, even in a polyclonal setting. Furthermore, the inducible CRISPR/Cas9 system dramatically decreased off-target effects with a pulse exposure of the genome to the Cas9/sgRNA complex. To target multiple genes simultaneously, we established simple one-step cloning approaches for expression of multiple sgRNAs with improved vectors. By combining our inducible and multiplex genome editing approaches, we were able to simultaneously delete Lysine Demethylase (KDM) 5A, 5B and 5C efficiently in vitro and in vivo This user friendly and highly efficient toolbox provides a solution for easy genome editing with tight temporal control, minimal off-target effects and multiplex targeting., (© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2016
- Full Text
- View/download PDF
41. Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds.
- Author
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Horton JR, Liu X, Gale M, Wu L, Shanks JR, Zhang X, Webber PJ, Bell JSK, Kales SC, Mott BT, Rai G, Jansen DJ, Henderson MJ, Urban DJ, Hall MD, Simeonov A, Maloney DJ, Johns MA, Fu H, Jadhav A, Vertino PM, Yan Q, and Cheng X
- Subjects
- Crystallography, X-Ray, Dose-Response Relationship, Drug, Enzyme Inhibitors chemistry, Humans, Models, Molecular, Molecular Structure, Organometallic Compounds chemistry, Retinoblastoma-Binding Protein 2 isolation & purification, Retinoblastoma-Binding Protein 2 metabolism, Structure-Activity Relationship, Enzyme Inhibitors pharmacology, Organometallic Compounds pharmacology, Retinoblastoma-Binding Protein 2 antagonists & inhibitors
- Abstract
The KDM5/JARID1 family of Fe(II)- and α-ketoglutarate-dependent demethylases removes methyl groups from methylated lysine 4 of histone H3. Accumulating evidence supports a role for KDM5 family members as oncogenic drivers. We compare the in vitro inhibitory properties and binding affinity of ten diverse compounds with all four family members, and present the crystal structures of the KDM5A-linked Jumonji domain in complex with eight of these inhibitors in the presence of Mn(II). All eight inhibitors structurally examined occupy the binding site of α-ketoglutarate, but differ in their specific binding interactions, including the number of ligands involved in metal coordination. We also observed inhibitor-induced conformational changes in KDM5A, particularly those residues involved in the binding of α-ketoglutarate, the anticipated peptide substrate, and intramolecular interactions. We discuss how particular chemical moieties contribute to inhibitor potency and suggest strategies that might be utilized in the successful design of selective and potent epigenetic inhibitors., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
42. Conditioned stress prevents cue-primed cocaine reinstatement only in stress-responsive rats.
- Author
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Hadad NA, Wu L, Hiller H, Krause EG, Schwendt M, and Knackstedt LA
- Subjects
- Amygdala drug effects, Animals, Cocaine-Related Disorders genetics, Cocaine-Related Disorders metabolism, Cocaine-Related Disorders physiopathology, Corticosterone blood, Corticotropin-Releasing Hormone genetics, Corticotropin-Releasing Hormone metabolism, Cues, Disease Models, Animal, Hippocampus drug effects, Hippocampus physiopathology, Male, Rats, Rats, Sprague-Dawley, Reflex, Startle drug effects, Self Administration, Stress, Psychological genetics, Stress, Psychological metabolism, Cocaine pharmacology, Dopamine Uptake Inhibitors pharmacology, Extinction, Psychological drug effects, Stress, Psychological physiopathology
- Abstract
Neurobiological mechanisms underlying comorbid posttraumatic stress disorder (PTSD) and cocaine use disorder (CUD) are unknown. We aimed to develop an animal model of PTSD + CUD to examine the neurobiology underlying cocaine-seeking in the presence of PTSD comorbidity. Rats were exposed to cat urine once for 10-minutes and tested for anxiety-like behaviors one week later. Subsequently, rats underwent long-access (LgA) cocaine self-administration and extinction training. Rats were re-exposed to the trauma context and then immediately tested for cue-primed reinstatement of cocaine-seeking. Plasma and brains were collected afterwards for corticosterone assays and real-time qPCR analysis. Urine-exposed (UE; n = 23) and controls not exposed to urine (Ctrl; n = 11) did not differ in elevated plus maze behavior, but UE rats displayed significantly reduced habituation of the acoustic startle response (ASR) relative to Ctrl rats. A median split of ASR habituation scores was used to classify stress-responsive rats. UE rats (n = 10) self-administered more cocaine on Day 1 of LgA than control rats (Ctrl + Coc; n = 8). Re-exposure to the trauma context prevented cocaine reinstatement only in stress-responsive rats. Ctrl + Coc rats had lower plasma corticosterone concentrations than Ctrls, and decreased gene expression of corticotropin releasing hormone (CRH) and Glcci1 in the hippocampus. Rats that self-administered cocaine displayed greater CRH expression in the amygdala that was independent of urine exposure. While we did not find that cat urine exposure induced a PTSD-like phenotype in our rats, the present study underscores the need to separate stressed rats into cohorts based on anxiety-like behavior in order to study individual vulnerability to PTSD + CUD.
- Published
- 2016
- Full Text
- View/download PDF
43. Differential Roles of Cell Death-inducing DNA Fragmentation Factor-α-like Effector (CIDE) Proteins in Promoting Lipid Droplet Fusion and Growth in Subpopulations of Hepatocytes.
- Author
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Xu W, Wu L, Yu M, Chen FJ, Arshad M, Xia X, Ren H, Yu J, Xu L, Xu D, Li JZ, Li P, and Zhou L
- Subjects
- Animals, Apoptosis Regulatory Proteins antagonists & inhibitors, Apoptosis Regulatory Proteins genetics, Cell Line, Cells, Cultured, Food Deprivation, Hepatocytes cytology, Hepatocytes pathology, Hepatocytes ultrastructure, Humans, Lipid Droplets ultrastructure, Membrane Fusion, Membrane Proteins antagonists & inhibitors, Membrane Proteins genetics, Membrane Proteins metabolism, Mice, Knockout, Mice, Obese, Obesity metabolism, Obesity physiopathology, Organelle Biogenesis, Organelle Size, Perilipin-2, Protein Transport, Proteins antagonists & inhibitors, Proteins genetics, RNA Interference, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins metabolism, Apoptosis Regulatory Proteins metabolism, Fatty Liver etiology, Hepatocytes metabolism, Lipid Droplets pathology, Obesity pathology, Proteins metabolism
- Abstract
Lipid droplets (LDs) are dynamic subcellular organelles whose growth is closely linked to obesity and hepatic steatosis. Cell death-inducing DNA fragmentation factor-α-like effector (CIDE) proteins, including Cidea, Cideb, and Cidec (also called Fsp27), play important roles in lipid metabolism. Cidea and Cidec are LD-associated proteins that promote atypical LD fusion in adipocytes. Here, we find that CIDE proteins are all localized to LD-LD contact sites (LDCSs) and promote lipid transfer, LD fusion, and growth in hepatocytes. We have identified two types of hepatocytes, one with small LDs (small LD-containing hepatocytes, SLHs) and one with large LDs (large LD-containing hepatocytes, LLHs) in the liver. Cideb is localized to LDCSs and promotes lipid exchange and LD fusion in both SLHs and LLHs, whereas Cidea and Cidec are specifically localized to the LDCSs and promote lipid exchange and LD fusion in LLHs. Cideb-deficient SLHs have reduced LD sizes and lower lipid exchange activities. Fasting dramatically induces the expression of Cidea/Cidec and increases the percentage of LLHs in the liver. The majority of the hepatocytes from the liver of obese mice are Cidea/Cidec-positive LLHs. Knocking down Cidea or Cidec significantly reduced lipid storage in the livers of obese animals. Our data reveal that CIDE proteins play differential roles in promoting LD fusion and lipid storage; Cideb promotes lipid storage under normal diet conditions, whereas Cidea and Cidec are responsible for liver steatosis under fasting and obese conditions., (© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2016
- Full Text
- View/download PDF
44. Insulin resistance and white adipose tissue inflammation are uncoupled in energetically challenged Fsp27-deficient mice.
- Author
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Zhou L, Park SY, Xu L, Xia X, Ye J, Su L, Jeong KH, Hur JH, Oh H, Tamori Y, Zingaretti CM, Cinti S, Argente J, Yu M, Wu L, Ju S, Guan F, Yang H, Choi CS, Savage DB, and Li P
- Subjects
- Animals, Blotting, Western, Crosses, Genetic, Diet, High-Fat, Glucose Clamp Technique, Glucose Tolerance Test, Inflammasomes metabolism, Insulin Resistance genetics, Leptin genetics, Leptin metabolism, Mice, Mice, Knockout, Microarray Analysis, Adipose Tissue, White physiopathology, Energy Metabolism physiology, Inflammation physiopathology, Insulin Resistance physiology, Proteins genetics
- Abstract
Fsp27 is a lipid droplet-associated protein almost exclusively expressed in adipocytes where it facilitates unilocular lipid droplet formation. In mice, Fsp27 deficiency is associated with increased basal lipolysis, 'browning' of white fat and a healthy metabolic profile, whereas a patient with congenital CIDEC deficiency manifested an adverse lipodystrophic phenotype. Here we reconcile these data by showing that exposing Fsp27-null mice to a substantial energetic stress by crossing them with ob/ob mice or BATless mice, or feeding them a high-fat diet, results in hepatic steatosis and insulin resistance. We also observe a striking reduction in adipose inflammation and increase in adiponectin levels in all three models. This appears to reflect reduced activation of the inflammasome and less adipocyte death. These findings highlight the importance of Fsp27 in facilitating optimal energy storage in adipocytes and represent a rare example where adipose inflammation and hepatic insulin resistance are disassociated.
- Published
- 2015
- Full Text
- View/download PDF
45. Rab8a-AS160-MSS4 regulatory circuit controls lipid droplet fusion and growth.
- Author
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Wu L, Xu D, Zhou L, Xie B, Yu L, Yang H, Huang L, Ye J, Deng H, Yuan YA, Chen S, and Li P
- Subjects
- Adipocytes cytology, Animals, Mice, Mice, Obese, Molecular Chaperones genetics, NIH 3T3 Cells, Protein Binding, Proteins metabolism, Adipocytes metabolism, Cytoplasmic Granules metabolism, GTPase-Activating Proteins metabolism, Lipid Metabolism, Molecular Chaperones metabolism, rab GTP-Binding Proteins metabolism
- Abstract
Rab GTPases, by targeting to specific membrane compartments, play essential roles in membrane trafficking. Lipid droplets (LDs) are dynamic subcellular organelles whose growth is closely linked to obesity and hepatic steatosis. Fsp27 is shown to be required for LD fusion and growth by enriching at LD-LD contact sites. Here, we identify Rab8a as a direct interactor and regulator of Fsp27 in mediating LD fusion in adipocytes. Knockdown of Rab8a in the livers of ob/ob mice results in the accumulation of smaller LDs and lower hepatic lipid levels. Surprisingly, it is the GDP-bound form of Rab8a that exhibits fusion-promoting activity. We further discover AS160 as the GTPase activating protein (GAP) for Rab8a, which forms a ternary complex with Fsp27 and Rab8a to positively regulate LD fusion. MSS4 antagonizes Fsp27-mediated LD fusion activity through Rab8a. Our results have thus revealed a mechanistic signaling circuit controlling LD fusion and fatty liver formation., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
46. Cidea controls lipid droplet fusion and lipid storage in brown and white adipose tissue.
- Author
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Wu L, Zhou L, Chen C, Gong J, Xu L, Ye J, Li D, and Li P
- Subjects
- 3T3-L1 Cells, Animals, Mice, Adipose Tissue metabolism, Adipose Tissue, Brown metabolism, Apoptosis Regulatory Proteins physiology, Lipid Metabolism
- Abstract
Excess lipid storage in adipose tissue results in the development of obesity and other metabolic disorders including diabetes, fatty liver and cardiovascular diseases. The lipid droplet (LD) is an important subcellular organelle responsible for lipid storage. We previously observed that Fsp27, a member of the CIDE family proteins, is localized to LD-contact sites and promotes atypical LD fusion and growth. Cidea, a close homolog of Fsp27, is expressed at high levels in brown adipose tissue. However, the exact role of Cidea in promoting LD fusion and lipid storage in adipose tissue remains unknown. Here, we expressed Cidea in Fsp27-knockdown adipocytes and observed that Cidea has similar activity to Fsp27 in promoting lipid storage and LD fusion and growth. Next, we generated Cidea and Fsp27 double-deficient mice and observed that these animals had drastically reduced adipose tissue mass and a strong lean phenotype. In addition, Cidea/Fsp27 double-deficient mice had improved insulin sensitivity and were intolerant to cold. Furthermore, we observed that the brown and white adipose tissues of Cidea/Fsp27 double-deficient mice had significantly reduced lipid storage and contained smaller LDs compared to those of Cidea or Fsp27 single deficient mice. Overall, these data reveal an important role of Cidea in controlling lipid droplet fusion, lipid storage in brown and white adipose tissue, and the development of obesity.
- Published
- 2014
- Full Text
- View/download PDF
47. Caesalpins A-H, bioactive cassane-type diterpenes from the seeds of Caesalpinia minax.
- Author
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Ma G, Yuan J, Wu H, Cao L, Zhang X, Xu L, Wei H, Wu L, Zheng Q, Li L, Zhang L, Yang J, and Xu X
- Subjects
- Diterpenes chemistry, Drug Screening Assays, Antitumor, Drugs, Chinese Herbal chemistry, Female, Hep G2 Cells, Humans, Inhibitory Concentration 50, MCF-7 Cells, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Seeds chemistry, Caesalpinia chemistry, Diterpenes isolation & purification, Diterpenes pharmacology, Drugs, Chinese Herbal isolation & purification, Drugs, Chinese Herbal pharmacology
- Abstract
Eight new cassane-type diterpenes, caesalpins A-H (1-8), were isolated from the ethyl acetate extract of Caesalpinia minax. Compound 1 displayed significant antiproliferative activity against HepG-2 (IC50 4.7 μM) and MCF-7 (IC50 2.1 μM) cells, and compounds 2 and 4 exhibited selective cytotoxic activities against MCF-7 (IC50 7.9 μM) and AGS (IC50 6.5 μM) cells.
- Published
- 2013
- Full Text
- View/download PDF
48. Perilipin1 promotes unilocular lipid droplet formation through the activation of Fsp27 in adipocytes.
- Author
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Sun Z, Gong J, Wu H, Xu W, Wu L, Xu D, Gao J, Wu JW, Yang H, Yang M, and Li P
- Subjects
- 3T3-L1 Cells, Amino Acid Sequence, Animals, Blotting, Western, Carrier Proteins chemistry, Crystallography, X-Ray, Fluorescence Recovery After Photobleaching, Gene Knockdown Techniques, Humans, Mice, Models, Biological, Models, Molecular, Molecular Sequence Data, Mutation genetics, Perilipin-1, Phosphoproteins chemistry, Protein Binding, Protein Multimerization, Protein Structure, Tertiary, Proteins chemistry, Adipocytes metabolism, Carrier Proteins metabolism, Lipids chemistry, Phosphoproteins metabolism, Proteins metabolism
- Abstract
Mature white adipocytes contain a characteristic unilocular lipid droplet. However, the molecular mechanisms underlying unilocular lipid droplet formation are poorly understood. We previously showed that Fsp27, an adipocyte-specific lipid droplet-associated protein, promotes lipid droplet growth by initiating lipid exchange and transfer. Here, we identify Perilipin1 (Plin1), another adipocyte-specific lipid droplet-associated protein, as an Fsp27 activator. Plin1 interacts with the CIDE-N domain of Fsp27 and markedly increases Fsp27-mediated lipid exchange, lipid transfer and lipid droplet growth. Functional cooperation between Plin1 and Fsp27 is required for efficient lipid droplet growth in adipocytes, as depletion of either protein impairs lipid droplet growth. The CIDE-N domain of Fsp27 forms homodimers and disruption of CIDE-N homodimerization abolishes Fsp27-mediated lipid exchange and transfer. Interestingly, Plin1 can restore the activity of CIDE-N homodimerization-defective mutants of Fsp27. We thus uncover a novel mechanism underlying lipid droplet growth and unilocular lipid droplet formation that involves the cooperative action of Fsp27 and Plin1 in adipocytes.
- Published
- 2013
- Full Text
- View/download PDF
49. Imaging lipid droplet fusion and growth.
- Author
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Sun Z, Gong J, Wu L, and Li P
- Subjects
- Adipocytes metabolism, Animals, Apoptosis Regulatory Proteins, Cell Line, Cytoplasm metabolism, Cytoplasm ultrastructure, Humans, Inclusion Bodies chemistry, Lipids chemistry, Triglycerides chemistry, Inclusion Bodies metabolism, Lipid Metabolism, Proteins metabolism, Triglycerides metabolism
- Abstract
Lipid droplets (LDs) are highly dynamic cellular organelles found in most eukaryotic cell types. In white adipocytes, LDs grow into a characteristic unilocular morphology that is well suited for its specialized role as an efficient energy storage organelle. Overexpansion of LDs in white adipocytes results in the development of obesity and insulin resistance. Besides its central role in lipid storage and mobilization, LDs play crucial roles in various cellular processes including virus packaging, host defense, protein storage, and degradation. CIDE proteins, in particular Fsp27, initiates a unique LD fusion process in adipocytes by clustering and enriching at LD contact site and promoting neutral lipid exchange and transfer between contacted LDs. Here, we summarize our approaches to quantitatively measure intracellular LD size and neutral lipid exchange between LDs. Utilization of these methods has greatly facilitated our understanding of molecular pathways governing LD growth in adipocytes., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
50. Cidea promotes hepatic steatosis by sensing dietary fatty acids.
- Author
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Zhou L, Xu L, Ye J, Li D, Wang W, Li X, Wu L, Wang H, Guan F, and Li P
- Subjects
- Animals, Biopsy, Needle, Disease Models, Animal, Fatty Liver genetics, Gene Expression, Hepatocytes metabolism, Hepatocytes pathology, Humans, Immunohistochemistry, Mice, Mice, Inbred C57BL, Mice, Knockout, Mice, Obese, Random Allocation, Reference Values, Sensitivity and Specificity, Apoptosis Regulatory Proteins metabolism, Fatty Acids metabolism, Fatty Liver metabolism, Sterol Regulatory Element Binding Protein 1 metabolism
- Abstract
Unlabelled: High levels of dietary saturated fat have been closely associated with the development of hepatic steatosis, but the factors that mediate this process remain elusive. Here, we observed that the level of cell death-inducing DNA fragmentation factor-alpha-like effector a (Cidea) expression was highly correlated with the severity of hepatic steatosis in humans. Overexpression of Cidea in mouse liver resulted in increased hepatic lipid accumulation and the formation of large lipid droplets (LDs). In contrast, mice with a Cidea deficiency had decreased lipid accumulation and alleviated hepatic steatosis when they received a high-fat-diet feeding or in ob/ob mice. Furthermore, the knockdown of Cidea in livers of ob/ob mice resulted in significantly reduced hepatic lipid accumulation and smaller LDs. Importantly, we observed that Cidea expression in hepatocytes was specifically induced by saturated fatty acids (FAs), and such induction was reduced when sterol response element-binding protein (SREBP)1c was knocked down. In contrast, the overexpression of SREBP1c restored the saturated FA-induced expression of Cidea. In addition, we observed that the stability of Cidea protein in hepatocytes increased significantly in response to treatment with FAs., Conclusion: Cidea plays critical roles in promoting hepatic lipid accumulation and in the development of hepatic steatosis by acting as a sensor that responds to diets that contain FAs., (Copyright © 2012 American Association for the Study of Liver Diseases.)
- Published
- 2012
- Full Text
- View/download PDF
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