103 results on '"Sutha, S."'
Search Results
2. Innovative aspects and applications of single cell technology for different diseases.
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Ali A, Manzoor S, Ali T, Asim M, Muhammad G, Ahmad A, Jamaludin MI, Devaraj S, and Munawar N
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Recent developments in single-cell technologies have provided valuable insights from cancer genomics to complex microbial communities. Single-cell technologies including the RNA-seq, next-generation sequencing (NGS), epigenomics, genomics, and transcriptomics can be used to uncover the single cell nature and molecular characterization of individual cells. These technologies also reveal the cellular transition states, evolutionary relationships between genes, the complex structure of single-cell populations, cell-to-cell interaction leading to biological discoveries and more reliable than traditional bulk technologies. These technologies are becoming the first choice for the early detection of inflammatory biomarkers affecting the proliferation and progression of tumor cells in the tumor microenvironment and improving the clinical efficacy of patients undergoing immunotherapy. These technologies also hold a central position in the detection of checkpoint inhibitors and thus determining the signaling pathways evoked by tumor invasion. This review addressed the emerging approaches of single cell-based technologies in cancer immunotherapies and different human diseases at cellular and molecular levels and the emerging role of sequencing technologies leading to drug discovery. Advancements in these technologies paved for discovering novel diagnostic markers for better understanding the pathological and biochemical mechanisms also for controlling the rate of different diseases., Competing Interests: None., (AJCR Copyright © 2024.)
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- 2024
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3. Cellular immune response to a single dose of live attenuated hepatitis a virus vaccine in obese children and adolescents.
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Soponkanabhorn T, Suratannon N, Buranapraditkun S, Tubjareon C, Prachuapthunyachart S, Eiamkulbutr S, and Chongsrisawat V
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Background: Limited data are currently available regarding the cellular immune response to a live attenuated hepatitis A virus (HAV) vaccine, especially in children with obesity. The objective of this retrospective cohort study was to compare the activation of antigen-specific interferon (IFN)-γ+ T cells in obese children and adolescents with healthy individuals before and after immunization with a single dose of live attenuated HAV vaccine., Methods: Blood samples were obtained from the 2021 study by Dumrisilp et al. investigating the immunogenicity of the live attenuated hepatitis A vaccine in children and young adults. Prior to enrollment, all 212 subjects had never received any HAV vaccine and tested negative for anti-HAV antibodies. The participants were vaccinated with a freeze-dried, live attenuated HAV vaccine of the H2 strain. In this study, we analyzed the stored peripheral blood mononuclear cells (PBMCs) obtained from a subgroup of 30 obese subjects and 30 normal-weight healthy controls of the same age and sex. PBMCs were collected before and 8-9 weeks after HAV vaccination for further analysis. These cells were stimulated with a recombinant antigen derived from HAV-VP3, and the immune response was evaluated using the IFN-γ enzyme-linked immunospot (ELISpot) assay., Results: The between-group analysis indicated that the T-cell response of obese participants was comparable to that of normal-weight controls both before and after vaccination. The change in IFN-γ production from before to after vaccination in the obese group was not significantly different from that of the control group. Additionally, in the obese group, no correlation was found between IFN-γ production and clinical characteristics such as sex, body mass index, waist circumference, and acanthosis nigricans., Conclusion: Testing for cellular immune response provides a comprehensive understanding of the overall immune response to vaccination. This study, the first to explore this significant aspect, suggests that obesity does not affect the short-term cellular immune response to live attenuated HAV vaccination., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors. Published by Elsevier Ltd.)
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- 2024
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4. An event triggered control scheme for enhanced production of Escherichia coli and biomass concentration during fed-batch cultivation.
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Murugan C, Subbian S, Kaliyaperumal S, Sadasivuni KK, Siddiqui MIH, Muthusamy S, Rosen MA, Prakash C, and Chan CK
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Control of a bioprocess is a challenging task mainly due to the nonlinearity of the process, the complex nature of microorganisms, and variations in critical parameters such as temperature, pH, and agitator speed. Generally, the optimum values chosen for critical parameters during Escherichia coli (E.coli) K-12fed-batch fermentation are37
ᵒ C for temperature, 7 for pH, and 35 % for Dissolved Oxygen (DO). The objective of this research is to enhance biomass concentration while minimizing energy consumption. To achieve this, an Event-Triggered Control (ETC) scheme based on feedback-feed forward control is proposed. The ETC system dynamically adjusts the substrate feed rate in response to variations in critical parameters. We compare the performance of classical Proportional Integral (PI) controllers and advanced Model Predictive Control (MPC) controllers in terms of bioprocess yield. Initially, the data are collected from a laboratory-scaled 3L bioreactor setup under fed-batch operating conditions, and data-driven models are developed using system identification techniques. Then, classical Proportional Integral (PI) and advanced Model Predictive Control (MPC) based feedback controllers are developed for controlling the yield of bioprocess by manipulating substrate flow rate, and their performances are compared. PI and MPC-based Event Triggered Feed Forward Controllers are designed to increase the yield and to suppress the effect of known disturbances due to critical parameters. Whenever there is a variation in the value of a critical parameter, it is considered an event, and ETC initiates a control action by manipulating the substrate feed rate. PI and MPC-based ETC controllers are developed in simulation, and their closed-loop performances are compared. It is observed that the Integral Square Error (ISE) is notably minimized to 4.668 for MPC with disturbance and 4.742 for MPC with Feed Forward Control. Similarly, the Integral Absolute Error (IAE) reduces to 2.453 for MPC with disturbance and 0.8124 for MPC with Feed Forward Control. The simulation results reveal that the MPC-based ETC control scheme enhances the biomass yield by 7 %, and this result is verified experimentally. This system dynamically adjusts the substrate feed rate in response to variations in critical parameters, which is a novel approach in the field of bioprocess control. Also, the proposed control schemes help reduce the frequency of communication between controller and actuator, which reduces power consumption., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors. Published by Elsevier Ltd.)- Published
- 2024
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5. Dietary intake, obesity, and metabolic risk factors among children and adolescents in the SEACO-CH20 cross-sectional study.
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Ramadas A, Rizal H, Rajakumar S, Mariapun J, Yasin MS, Armstrong MEG, and Su TT
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- Humans, Child, Male, Female, Adolescent, Cross-Sectional Studies, Risk Factors, Malaysia epidemiology, Obesity epidemiology, Pediatric Obesity epidemiology, Metabolic Syndrome epidemiology, Metabolic Syndrome etiology, Diet adverse effects
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We investigated the association between dietary intake and metabolic risk factors in children and adolescents within a semi-rural Malaysian community. Using an interviewer-led questionnaire, we surveyed 623 participants aged 7-18 from the South East Asia Community Observatory (SEACO). Anthropometric and blood pressure data were collected from all participants, while a subset (n = 162) provided blood samples for biomarker analysis, including fasting blood glucose (FBG), total cholesterol (TC), triglycerides (TG), high-density lipoprotein cholesterol (HDL-C), and low-density lipoprotein cholesterol (LDL-C). Metabolic syndrome was determined using the International Diabetes Federation's Definition of Metabolic Syndrome in Children and Adolescents. Most participants were Malay (66.8%), with a median household income of MYR1,500 and a balanced sex distribution. Cereals, processed foods, beverages, fruits, and vegetables were commonly consumed. Obesity and abdominal obesity were prevalent, affecting more than a third of participants. Adherence to dietary recommendations was generally poor (ranging from 19.9 to 58.1%) and varied across age, sex, and ethnicity. Notably, some food groups displayed unexpected associations with health markers; for instance, fruit consumption was linked to abdominal obesity in children (abdominal obesity vs. normal: 2.4 servings/day vs. 1.6 servings/day). These findings emphasise the necessity of longitudinal studies to explore the complex relationship between diet and long-term health outcomes, including cardiometabolic diseases, while acknowledging the unique challenges posed by the COVID-19 pandemic on data collection and analysis., (© 2024. The Author(s).)
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- 2024
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6. Diseases of bile duct in children.
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Eiamkulbutr S, Tubjareon C, Sanpavat A, Phewplung T, Srisan N, and Sintusek P
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- Infant, Child, Infant, Newborn, Humans, Bile Ducts diagnostic imaging, Bile Ducts surgery, Cholangiography, Biliary Atresia diagnosis, Biliary Atresia surgery, Choledochal Cyst diagnosis, Choledochal Cyst diagnostic imaging, Bile Duct Diseases diagnosis, Bile Duct Diseases etiology, Bile Duct Diseases therapy
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Several diseases originate from bile duct pathology. Despite studies on these diseases, certain etiologies of some of them still cannot be concluded. The most common disease of the bile duct in newborns is biliary atresia, whose prognosis varies according to the age of surgical correction. Other diseases such as Alagille syndrome, inspissated bile duct syndrome, and choledochal cysts are also time-sensitive because they can cause severe liver damage due to obstruction. The majority of these diseases present with cholestatic jaundice in the newborn or infant period, which is quite difficult to differentiate regarding clinical acumen and initial investigations. Intraoperative cholangiography is potentially necessary to make an accurate diagnosis, and further treatment will be performed synchronously or planned as findings suggest. This article provides a concise review of bile duct diseases, with interesting cases., Competing Interests: Conflict-of-interest statement: All the authors report no relevant conflicts of interest for this article., (©The Author(s) 2024. Published by Baishideng Publishing Group Inc. All rights reserved.)
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- 2024
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7. Adherence tool for prophylactic haemophilia treatment in adult and adolescent patients: A systematic review and meta-analysis protocol.
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Mokhtar FM, Rajakumar S, and Zaman Huri H
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- Male, Adult, Humans, Adolescent, Systematic Reviews as Topic, Meta-Analysis as Topic, Hemorrhage prevention & control, Hemorrhage drug therapy, Blood Coagulation Factors therapeutic use, Review Literature as Topic, Hemophilia A drug therapy, Hemophilia A prevention & control, Hemophilia B drug therapy
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Hemophilia is a congenital bleeding disorder resulting from a low level or deficiency of clotting factors. It is an x-linked recessive disease and happens almost exclusively in males whereas females are the carrier of the affected gene. The most common types of hemophilia are hemophilia A and Hemophilia B. Hemophilia is classified into mild, moderate and severe. Prophylaxis treatment has more advantages clinically compare to on-demand therapy. It may reduce the bleeding frequency, gives protection from joint damage, may lower the number of total bleeding episodes per year, and may reduce annualised spontaneous and trauma related bleeding events. However, prophylaxis treatment needs regular weekly infusions therefore it is painful to administer especially if the vein is difficult to access. It may cause pain at the site of injections and may lead to non-adherence to treatment. Non-adherence to a regimen will result in insufficient clotting factor levels in the body. The efficacy of the medication is reduced and may lead to a high bleeding tendency. Thus far, the study on adult haemophilic patient adherence tool is scarce and limited; and therefore this review is warranted. The study protocol is conducted as per the PRISMA-P guideline. There are 4 concepts in this systematic review which are Haemophilia, adult and adolescence, preventive treatment and adherence. Articles will be sought from electronic databases PUBMED, Ovid EMBASE, CINAHL, and SCOPUS using the MeSH term, synonym free-text word, truncation, and proximity operators as per each database. The proposed keywords within each concept will be joined using the Boolean operator "OR "and the 4 different concepts combined using the Boolean operator "AND". Search will be limited to Human, English language, and publication until 2022. Studies will be included if they meet the study inclusion criteria. The quality of the studies will be appraised using the Newcastle-Ottawa quality assessment scale (NOS) for observation-based studies. This systematic review does not require formal ethical approval as data will be extracted from selected published studies. The results will be disseminated through a peer-reviewed publication and relevant conference presentations.(PROSPERO registration CRD42021273813)., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Mokhtar et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2023
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8. Network analysis identifies strain-dependent response to tau and tau seeding-associated genes.
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Acri DJ, You Y, Tate MD, Karahan H, Martinez P, McCord B, Sharify AD, John S, Kim B, Dabin LC, Philtjens S, Wijeratne HRS, McCray TJ, Smith DC, Bissel SJ, Lamb BT, Lasagna-Reeves CA, and Kim J
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- Animals, Mice, Mice, Inbred C57BL, Brain, Gene Regulatory Networks, Alzheimer Disease genetics, Tauopathies genetics
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Previous research demonstrated that genetic heterogeneity is a critical factor in modeling amyloid accumulation and other Alzheimer's disease phenotypes. However, it is unknown what mechanisms underlie these effects of genetic background on modeling tau aggregate-driven pathogenicity. In this study, we induced tau aggregation in wild-derived mice by expressing MAPT. To investigate the effect of genetic background on the action of tau aggregates, we performed RNA sequencing with brains of C57BL/6J, CAST/EiJ, PWK/PhJ, and WSB/EiJ mice (n = 64) and determined core transcriptional signature conserved in all genetic backgrounds and signature unique to wild-derived backgrounds. By measuring tau seeding activity using the cortex, we identified 19 key genes associated with tau seeding and amyloid response. Interestingly, microglial pathways were strongly associated with tau seeding activity in CAST/EiJ and PWK/PhJ backgrounds. Collectively, our study demonstrates that mouse genetic context affects tau-mediated alteration of transcriptome and tau seeding. The gene modules associated with tau seeding provide an important resource to better model tauopathy., (© 2023 Acri et al.)
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- 2023
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9. A survey on Malaysian's acceptance and perceptions towards COVID-19 booster dose.
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Rajakumar S, Shamsuddin N, Alshawsh MA, Rajakumar S, and Zaman Huri H
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Progressive reopening of the economy and declaration of COVID-19 as endemic has relaxed social distancing and mask-wearing necessities in Malaysia. The Ministry of Health of Malaysia reported vaccination rate had reached 86.1% for the first dose and 84.3% for the second dose as of April 2023. However, the uptake of booster doses (third dose or fourth dose) is relatively lower at 68.6% and 1.5%, respectively. A cross-sectional survey was undertaken to study the acceptance and perception of Malaysians towards booster doses in Peninsular Malaysia with participants 18 years old and above by distributing questionnaires at public areas such as government offices, major city train stations, and airports. The study included elderly participants who were not technology savvy. Of 395 survey respondents, 69.4% accepted the COVID-19 booster dose. The results showed that smartphone usage (p = 0.019), living area (p = 0.049), and education level (p = 0.006) significantly influenced the perception of booster dose acceptance among socio-demographic characteristics. Despite experiencing side effects from previous vaccination, 65.9% of respondents still opted to receive booster doses (p = 0.019). The highest deciding factor in accepting booster dose was the need for more clinical studies on COVID-19 booster dose (58.2%) (p = 0.045). In conclusion, the survey demonstrates that greater emphasis on updating and providing more clinical studies regarding the need for booster doses will increase the public's acceptance of the COVID-19 booster dose., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 The Author(s).)
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- 2023
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10. Physico-chemical and extraction properties on alkali-treated Acacia pennata fiber.
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Sheeba KRJ, Alagarasan JK, Dharmaraja J, Kavitha SA, Shobana S, Arvindnarayan S, Vadivel M, Lee M, and Retnam KP
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- Alkalies chemistry, Cellulose chemistry, Lignin chemistry, Tensile Strength, Acacia
- Abstract
The production of reinforced composite materials can generally benefit greatly from the use of natural cellulosic woody fibers as good sustainable resources. Natural plants like hemp, cotton, and bamboo are great options for knitters and crocheters looking to make eco-friendly goods. The current study examines the properties of natural fiber obtained from the stem of the Acacia pennata (AP) plant, as well as its basic physico-chemical, structural, thermal, and mechanical characteristics. The key goal of this work was to investigate how alkali treatment affected the AP fibers' morphology, chemical composition, tensile capabilities, morphological changes, structural changes, and thermal degradation (APFs). The SEM image and pXRD analyses support the improved surface roughness of the fiber, and that was seen after the alkaline treatment. From XRD analysis, the fiber crystallinity index (54.65%) was improved and it was connected to their SEM pictograms in comparison to untreated APF. Alkali-treated AP fibers include a higher percentage of chemical components including cellulose (51.38%) and ash (5.13%). Alkali-treated AP fibers have a lower amount of hemi-cellulose (30.30%), lignin (20.96%), pectin (8.77%), wax (0.12%), and moisture (13.44%) than untreated APF. Their low density and high cellulosic content will improve their ability to fiber matrices. The thermal behavior of AP fiber at various temperatures was demonstrated by TG-DTA analysis, and tensile strength was also investigated., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2023
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11. Phytochemical, antioxidant, antipyretic and anti-inflammatory activities of aqueous-methanolic leaf extract of Mangifera indica .
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Ain QU, Iqbal MO, Khan IA, Bano N, Naeem M, Jamaludin MI, and Devaraj S
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Objective: Plant-based natural antioxidants have a wide variety of biological activities with significant therapeutic value. Mangifera indica has been used traditionally to treat a variety of ailments in animals and human, but little is defined about its biological or pharmacological effects. Therefore, the objective of the present study was to evaluate phytochemical, antioxidant, antipyretic and anti-inflammatory activities of aqueous-methanolic leaf extract of M. indica ., Methods: To investigate the possible impact of aqueous-methanolic leaf extract of M. indica on oxidative stress, inflammation, and pyrexia, we used a combined in vitro and in vivo series of experiments on laboratory animals., Results: Results revealed significant antioxidant potential in 2,2-diphenylpicrylhydrazyl (DPPH) and nitric oxide (NO) scavenging assay, while significant but dose dependent antipyretic potential was documented in typhoid-paratyphoid A and B (TAB) vaccine and prostaglandin E (PGE) induced pyrexia models. Significant anti-inflammatory effects were observed in both acute and chronic inflammatory models of arachidonic acid and formalin. Phytochemical screening and high-performance liquid chromatography (HPLC) analysis of M. Indica confirmed the presence of mangiferin, quercetin, and isoquercetin. These phytoconstituents likely play a role in the observed biological activities. Our results show that M. indica has antioxidant, anti-inflammatory, and antipyretic effects, lending credence to its traditional use and advocating for its utilization as a viable contender in treating oxidative stress-associated ailments., Conclusion: It is concluded that Magnifera indica has various properties in the treatment of various diseases., Competing Interests: None., (AJTR Copyright © 2023.)
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- 2023
12. Prevalence of gastroesophageal reflux disease in children with extraesophageal manifestations using combined-video, multichannel intraluminal impedance-pH study.
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Eiamkulbutr S, Dumrisilp T, Sanpavat A, and Sintusek P
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Background: Gastroesophageal reflux disease (GERD) might be either a cause or comorbidity in children with extraesophageal problems especially as refractory respiratory symptoms, without any best methods or criterion for diagnosing it in children., Aim: To evaluate the prevalence of extraesophageal GERD using conventional and combined-video, multichannel intraluminal impedance-pH (MII-pH), and to propose novel diagnostic parameters., Methods: The study was conducted among children suspected of extraesophageal GERD at King Chulalongkorn Memorial Hospital between 2019 and 2022. The children underwent conventional and/or combined-video MII-pH. The potential parameters were assessed and receiver operating characteristic was used for the significant parameters., Results: Of 51 patients (52.9% males), aged 2.24 years were recruited. The common problems were cough, recurrent pneumonia, and hypersecretion. Using MII-pH, 35.3% of the children were diagnosed with GERD by reflux index (31.4%), total reflux events (3.9%), and symptom indices (9.8%) with higher symptom recorded in the GERD group (94 vs 171, P = 0.033). In the video monitoring group ( n = 17), there were more symptoms recorded (120 vs 220, P = 0.062) and more GERD (11.8% vs 29.4%, P = 0.398) by symptom indices . Longest reflux time and mean nocturnal baseline impedance were significant parameters for diagnosis with receiver operating characteristic areas of 0.907 ( P = 0.001) and 0.726 ( P = 0.014)., Conclusion: The prevalence of extraesophageal GERD in children was not high as expected. The diagnostic yield of symptom indices increased using video monitoring. Long reflux time and mean nocturnal baseline impedance are novel parameters that should be integrated into the GERD diagnostic criteria in children., Competing Interests: Conflict-of-interest statement: The authors of this manuscript having no conflict of interest to disclose., (©The Author(s) 2023. Published by Baishideng Publishing Group Inc. All rights reserved.)
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- 2023
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13. Zoledronic acid improves bone quality and muscle function in a high bone turnover state.
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Trivedi T, Manaa M, John S, Reiken S, Murthy S, Pagnotti GM, Dole NS, She Y, Suresh S, Hain BA, Regan J, Ofer R, Wright L, Robling A, Cao X, Alliston T, Marks AR, Waning DL, Mohammad KS, and Guise TA
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Summary: Zoledronic acid (ZA) prevents muscle weakness in mice with bone metastases; however, its role in muscle weakness in non-tumor-associated metabolic bone diseases and as an effective treatment modality for the prevention of muscle weakness associated with bone disorders, is unknown. We demonstrate the role of ZA-treatment on bone and muscle using a mouse model of accelerated bone remodeling, which represents the clinical manifestation of non-tumor associated metabolic bone disease. ZA increased bone mass and strength and rescued osteocyte lacunocanalicular organization. Short-term ZA treatment increased muscle mass, whereas prolonged, preventive treatment improved muscle mass and function. In these mice, muscle fiber-type shifted from oxidative to glycolytic and ZA restored normal muscle fiber distribution. By blocking TGFβ release from bone, ZA improved muscle function, promoted myoblast differentiation and stabilized Ryanodine Receptor-1 calcium channel. These data demonstrate the beneficial effects of ZA in maintaining bone health and preserving muscle mass and function in a model of metabolic bone disease., Context and Significance: TGFβ is a bone regulatory molecule which is stored in bone matrix, released during bone remodeling, and must be maintained at an optimal level for the good health of the bone. Excess TGFβ causes several bone disorders and skeletal muscle weakness. Reducing excess TGFβ release from bone using zoledronic acid in mice not only improved bone volume and strength but also increased muscle mass, and muscle function. Progressive muscle weakness coexists with bone disorders, decreasing quality of life and increasing morbidity and mortality. Currently, there is a critical need for treatments improving muscle mass and function in patients with debilitating weakness. Zoledronic acid's benefit extends beyond bone and could also be useful in treating muscle weakness associated with bone disorders.
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- 2023
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14. Medication Use Questionnaire for Older Adults in Malaysia: Translation, Cultural Adaptation, and Reliability.
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Christopher CM, Blebil AQ, Kc B, Alex D, Mohamed Ibrahim MI, Rajakumar S, and Ismail N
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- Humans, Aged, Malaysia, Reproducibility of Results, Surveys and Questionnaires, Translations, Translating
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Objectives: This study aimed to translate the Medication Use Questionnaire into a Malay version, adapt it to Malaysia's culture, and verify its reliability among Malaysia's older adults., Methods: Methodological approaches were used to translate, validate, and modify the questionnaire. The subjects were older adults aged ≥ 60 years in primary care settings in Penang, Malaysia. Two forward translations (English to Malay) were developed, reviewed, and back translated to English. The reconciliation phase was conducted to compare the translated and original questionnaires. Five older adults were then interviewed for the cognitive debriefing of the reconciled questionnaire to assess the linguistic and cultural equivalence. Two experts assessed content validity, and the translated questionnaire was proofread and finalized. After that, pilot test was done to examine the internal consistency among 20 older adults., Results: Translation of the questionnaire was done with no major disagreements. The main issues identified in cognitive debriefing and content validity were terms, number of questions, and phrases used in the questionnaire. Most participants reported that the questionnaires were not difficult to complete during the cognitive debriefing phase. The issues were then judged and revised accordingly. Further pilot testing on 20 older adults demonstrated good internal consistency reliability, Cronbach α (0.902)., Conclusions: This study findings suggest promising data supporting the use of translated version of the Medication Use Questionnaire that can be used to identify medication use problems among older adults in Malaysia., (Copyright © 2023 International Society for Health Economics and Outcomes Research. Published by Elsevier Inc. All rights reserved.)
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- 2023
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15. HH model based smart deep brain stimulator to detect, predict and control epilepsy using machine learning algorithm.
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Nambi Narayanan S and Subbian S
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- Humans, Machine Learning, Algorithms, Seizures diagnosis, Brain, Potassium Channels, Epilepsy diagnosis, Epilepsy therapy
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Background: Epilepsy is the most common neurological disorder in the world. To control epilepsy, deep brain stimulation is one of the widely accepted treatment techniques. However, conventional deep brain stimulation technique provides continuous stimulation without optimizing the stimulation parameters, resulting in adverse side effects and unexpected death. Hence, understanding the dynamic behavior of brain neural networks at a cellular level is required for patient-specific epilepsy treatment. Considering the underlying mechanism of a single neuronal shift in the brain neural network, computational model-based techniques have a new face for healthcare, which aims to develop effective medical devices for preclinical investigations., New Method: This paper discusses the design of a Smart Deep Brain Stimulator (SDBS) using the Hodgkin-Huxley (HH) conductance-based cellular model of brain neurons to automatically detect, predict and regulate epilepsy against patient-specific conditions. Epileptic activity is simulated as a spike train of action potential due to sodium and potassium channel conductance variations in the single-neuron HH model. The proposed SDBS consists of three components:- i) seizure detection using bagging and boosting-based ensemble machine learning classifiers, ii) channel conductance prediction using Long Short Term Memory-Recurrent Neural Network (LSTM-RNN) based Deep Neural Network (DNN) for updating model parameters of brain neuron, and iii) model-based intelligent control of epileptic seizure with Nonlinear Autoregressive Moving Average-L2 (NARMA-L2) Controller and Nonlinear Model Predictive Controller (NMPC)., Results: For effective treatment, improving the overall accuracy and efficiency of SDBS is essential. For epilepsy detection, the ensemble bagging machine learning algorithm provides better accuracy of 92.7% compared to the ensemble boosting algorithm. LSTM-RNN deep neural network model with four layers predicts the variations in channel conductance with Root Mean Square Error (RMSE) of 0.00568 and 0.009081 for sodium and potassium channel conductance, respectively. From the closed-loop performances of SDBS with an intelligent control scheme, it is observed that SDBS with NMPC provides efficient and accurate stimulation with minimum energy consumption. From a stability point of view, SDBS with NMPC provides better stability than SDBS with NARMA-L2 Controller., Comparison With Existing Method: The proposed SDBS is designed to generate accurate stimulation pulses for epilepsy patients with specific conditions depending on the neuronal activity of a single neuron. Moreover, it will also adapt to the dynamic condition of epilepsy patients. The existing deep brain stimulator continuously provides stimulation pulses without adapting to the patient's conditions., Conclusion: The proposed SDBS could provide patient-specific treatment based on sodium/potassium channel conductance variations of brain neurons. It will help increase the use of deep brain stimulation techniques and reduce sudden death. Furthermore, the proposed technique will be extended to neural network models with larger neuronal populations to improve the practical feasibility., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)
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- 2023
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16. Active fault tolerant deep brain stimulator for epilepsy using deep neural network.
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Senthilvelmurugan NN and Subbian S
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- Humans, Seizures therapy, Seizures diagnosis, Neural Networks, Computer, Brain, Potassium, Electroencephalography methods, Epilepsy therapy
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Millions of people around the world are affected by different kinds of epileptic seizures. A deep brain stimulator is now claimed to be one of the most promising tools to control severe epileptic seizures. The present study proposes Hodgkin-Huxley (HH) model-based Active Fault Tolerant Deep Brain Stimulator (AFTDBS) for brain neurons to suppress epileptic seizures against ion channel conductance variations using a Deep Neural Network (DNN). The AFTDBS contains the following three modules: (i) Detection of epileptic seizures using black box classifiers such as Support Vector Machine (SVM) and K-Nearest Neighbor (KNN), (ii) Prediction of ion channels conductance variations using Long Short-Term Memory (LSTM), and (iii) Development of Reconfigurable Deep Brain Stimulator (RDBS) to control epileptic spikes using Proportional Integral (PI) Controller and Model Predictive Controller (MPC). Initially, the synthetic data were collected from the HH model by varying ion channel conductance. Then, the seizure was classified into four groups namely, normal and epileptic due to variations in sodium ion-channel conductance, potassium ion-channel conductance, and both sodium and potassium ion-channel conductance. In the present work, current controlled deep brain stimulators were designed for epileptic suppression. Finally, the closed-loop performances and stability of the proposed control schemes were analyzed. The simulation results demonstrated the efficacy of the proposed DNN-based AFTDBS., (© 2023 Walter de Gruyter GmbH, Berlin/Boston.)
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- 2023
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17. Explorations of CRISPR/Cas9 for improving the long-term efficacy of universal CAR-T cells in tumor immunotherapy.
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Naeem M, Hazafa A, Bano N, Ali R, Farooq M, Razak SIA, Lee TY, and Devaraj S
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- Humans, CRISPR-Cas Systems genetics, Immunotherapy, T-Lymphocytes, Tumor Microenvironment, Receptors, Chimeric Antigen genetics, Receptors, Chimeric Antigen metabolism, Neoplasms genetics, Neoplasms therapy
- Abstract
Chimeric antigen receptor (CAR) T therapy has shown remarkable success in discovering novel CAR-T cell products for treating malignancies. Despite of successful results from clinical trials, CAR-T cell therapy is ineffective for long-term disease progression. Numerous challenges of CAR-T cell immunotherapy such as cell dysfunction, cytokine-related toxicities, TGF-β resistance, GvHD risks, antigen escape, restricted trafficking, and tumor cell infiltration still exist that hamper the safety and efficacy of CAR-T cells for malignancies. The accumulated data revealed that these challenges could be overcome with the advanced CRISPR genome editing technology, which is the most promising tool to knockout TRAC and HLA genes, inhibiting the effects of dominant negative receptors (PD-1, TGF-β, and B2M), lowering the risks of cytokine release syndrome (CRS), and regulating CAR-T cell function in the tumor microenvironment (TME). CRISPR technology employs DSB-free genome editing methods that robustly allow efficient and controllable genetic modification. The present review explored the innovative aspects of CRISPR/Cas9 technology for developing next-generation/universal allogeneic CAR-T cells. The present manuscript addressed the ongoing status of clinical trials of CRISPR/Cas9-engineered CAR-T cells against cancer and pointed out the off-target effects associated with CRISPR/Cas9 genome editing. It is concluded that CAR-T cells modified by CRISPR/Cas9 significantly improved antitumor efficacy in a cost-effective manner that provides opportunities for novel cancer immunotherapies., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2023
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18. Lignocellulosic biomass conversion via greener pretreatment methods towards biorefinery applications.
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Dharmaraja J, Shobana S, Arvindnarayan S, Francis RR, Jeyakumar RB, Saratale RG, Ashokkumar V, Bhatia SK, Kumar V, and Kumar G
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- Biomass, Solvents, Biofuels, Hydrolysis, Lignin metabolism, Carbohydrates
- Abstract
Lignocellulose biomass during pretreatment releases various compounds, among them the most important is reducing sugars, which can be utilized for the production of biofuels and some other products. Thereby, innovative greener pretreatment techniques for lignocellulosic materials have been considered to open a new door in the aspects of digestibility of the rigid carbohydrate-lignin matrix to reduce the particle size and remove hemicellulose/lignin contents to successfully yield valid bioproducts. This article reviews about the composition of lignocelluloses and emphasizes various green pretreatments viz novel green solvent-based IL and DES steam explosion, supercritical carbon dioxide explosion (Sc-CO2) and co-solvent enhanced lignocellulosic fractionation (CELF) along with suitable mechanistic pathway of LCB pretreatment process. Finally, this article concludes that the existing pretreatments should be redesigned to conquer the demands by large scale production and suggests combined pretreatment methods to carry out various biomass pre-processing., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier Ltd. All rights reserved.)
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- 2023
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19. Network analysis reveals strain-dependent response to misfolded tau aggregates.
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Acri DJ, You Y, Tate MD, McCord B, Sharify AD, John S, Karahan H, Kim B, Dabin LC, Philtjens S, Wijeratne HRS, McCray TJ, Smith DC, Bissel SJ, Lamb BT, Lasagna-Reeves CA, and Kim J
- Abstract
Mouse genetic backgrounds have been shown to modulate amyloid accumulation and propagation of tau aggregates. Previous research into these effects has highlighted the importance of studying the impact of genetic heterogeneity on modeling Alzheimer's disease. However, it is unknown what mechanisms underly these effects of genetic background on modeling Alzheimer's disease, specifically tau aggregate-driven pathogenicity. In this study, we induced tau aggregation in wild-derived mice by expressing MAPT (P301L). To investigate the effect of genetic background on the action of tau aggregates, we performed RNA sequencing with brains of 6-month-old C57BL/6J, CAST/EiJ, PWK/PhJ, and WSB/EiJ mice (n=64). We also measured tau seeding activity in the cortex of these mice. We identified three gene signatures: core transcriptional signature, unique signature for each wild-derived genetic background, and tau seeding-associated signature. Our data suggest that microglial response to tau seeds is elevated in CAST/EiJ and PWK/PhJ mice. Together, our study provides the first evidence that mouse genetic context influences the seeding of tau., Summary: Seeding of tau predates the phosphorylation and spreading of tau aggregates. Acri and colleagues report transcriptomic responses to tau and elevated tau seeds in wild-derived mice. This paper creates a rich resource by combining genetics, tau biosensor assays, and transcriptomics.
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- 2023
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20. Pathogenetic Mechanisms of Liver-Associated Injuries, Management, and Current Challenges in COVID-19 Patients.
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Naeem M, Bano N, Manzoor S, Ahmad A, Munawar N, Razak SIA, Lee TY, Devaraj S, and Hazafa A
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- Humans, SARS-CoV-2, COVID-19 complications, Non-alcoholic Fatty Liver Disease, Liver Neoplasms
- Abstract
The global outbreak of COVID-19 possesses serious challenges and adverse impacts for patients with progression of chronic liver disease and has become a major threat to public health. COVID-19 patients have a high risk of lung injury and multiorgan dysfunction that remains a major challenge to hepatology. COVID-19 patients and those with liver injury exhibit clinical manifestations, including elevation in ALT, AST, GGT, bilirubin, TNF-α, and IL-6 and reduction in the levels of CD4 and CD8. Liver injury in COVID-19 patients is induced through multiple factors, including a direct attack of SARS-CoV-2 on liver hepatocytes, hypoxia reperfusion dysfunction, cytokine release syndrome, drug-induced hepatotoxicity caused by lopinavir and ritonavir, immune-mediated inflammation, renin-angiotensin system, and coagulopathy. Cellular and molecular mechanisms underlying liver dysfunction are not fully understood in severe COVID-19 attacks. High mortality and the development of chronic liver diseases such as cirrhosis, alcoholic liver disease, autoimmune hepatitis, nonalcoholic fatty liver disease, and hepatocellular carcinoma are also associated with patients with liver damage. COVID-19 patients with preexisting or developing liver disease should be managed. They often need hospitalization and medication, especially in conjunction with liver transplants. In the present review, we highlight the attack of SARS-CoV-2 on liver hepatocytes by exploring the cellular and molecular events underlying the pathophysiological mechanisms in COVID-19 patients with liver injury. We also discuss the development of chronic liver diseases during the progression of SARS-CoV-2 replication. Lastly, we explore management principles in COVID-19 patients with liver injury and liver transplantation.
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- 2023
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21. Correction to: Adult plant stem rust resistance in durum wheat Glossy Huguenot: mapping, marker development and validation.
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Mago R, Chen C, Xia X, Whan A, Forrest K, Basnet BR, Perera G, Chandramohan S, Randhawa M, Hayden M, Bansal U, Huerta-Espino J, Singh RP, Bariana H, and Lagudah E
- Published
- 2022
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22. Lignocellulose biohydrogen towards net zero emission: A review on recent developments.
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Lay CH, Dharmaraja J, Shobana S, Arvindnarayan S, Krishna Priya R, Jeyakumar RB, Saratale RG, Park YK, Kumar V, and Kumar G
- Subjects
- Hydrolysis, Biomass, Fermentation, Lignin chemistry, Cellulose
- Abstract
This review mainly determines novel and advance physical, chemical, physico-chemical, microbiological and nanotechnology-based pretreatment techniques in lignocellulosic biomass pretreatment for bio-H2 production. Further, aim of this review is to gain the knowledge on the lignocellulosic biomass pretreatment and its priority on the efficacy of bio-H2 and positive findings. The influence of various pretreatment techniques on the structure of lignocellulosic biomass have presented with the pros and cons, especially about the cellulose digestibility and the interference by generation of inhibitory compounds in the bio-enzymatic technique as such compounds is toxic. The result implies that the stepwise pretreatment technique only can ensure eventually the lignocellulosic biomass materials fermentation to yield bio-H2. Though, the mentioned pretreatment steps are still a challenge to procure cost-effective large-scale conversion of lignocellulosic biomass into fermentable sugars along with low inhibitory concentration., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier Ltd. All rights reserved.)
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- 2022
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23. Microalgae cultivation strategies using cost-effective nutrient sources: Recent updates and progress towards biofuel production.
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Ganesh Saratale R, Ponnusamy VK, Jeyakumar RB, Sirohi R, Piechota G, Shobana S, Dharmaraja J, Lay CH, Dattatraya Saratale G, Seung Shin H, and Ashokkumar V
- Subjects
- Biofuels, Biomass, Carbon Dioxide, Cost-Benefit Analysis, Nutrients, Microalgae
- Abstract
Scientists are grabbing huge attention as well as consciousness on non-renewable energy sources for the global energy crises because of gradual increase in oil price, fast depletion or low availability of resources, and the release of more toxic-gases (CO
2 , SOx , Nx O) during exhaustion, etc. Due to such hitches, the key need is to find alternative biofuels or feedstocks to replace fossil fuel energy demands worldwide. Currently, microalgae have become intrigued feedstock candidates (3rd generation source of biofuel) to replace nearly 50-60 % of fossil fuels due to high production of biomass and oil, mitigating CO2 and wastewater remediation. The present work demonstrated the current developments and future perspectives on large-scale algal cultivation strategies for the biorefinery economy. In addition, various advanced cultivation techniques adopted for enhanced biomass production and cost-effective methods for bioenergy production were detailly discussed., (Copyright © 2022 Elsevier Ltd. All rights reserved.)- Published
- 2022
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24. A replication competent luciferase-secreting DENV2 reporter for sero-epidemiological surveillance of neutralizing and enhancing antibodies.
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Saipin K, Thaisomboonsuk B, Siridechadilok B, Chaitaveep N, Ramasoota P, Puttikhunt C, Sangiambut S, Jones A, Kraivong R, Sriburi R, Keelapang P, Sittisombut N, and Junjhon J
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- Animals, Antibodies, Blocking, Antibodies, Neutralizing, Antibodies, Viral, Luciferases genetics, Viral Envelope Proteins, Dengue, Dengue Virus genetics
- Abstract
Dengue virus (DENV) specific neutralizing and enhancing antibodies play crucial roles in dengue disease prevention and pathogenesis. DENV reporters are gaining popularity in the evaluation of these antibodies; their accessibility and acceptance may improve with more efficient production systems and indications of their antigenic equivalence to the wild-type virus. This study aimed to generate a replication competent luciferase-secreting DENV reporter (LucDENV2) and evaluate its feasibility in neutralizing and infection-enhancing antibody assays in comparison with wild-type DENV2, strain 16681, and a luciferase-secreting, single-round infectious DENV2 reporter (LucSIP). LucDENV2 replicated to similarly high levels as that of the parent 16681 virus in a commonly used mosquito cell line. LucDENV2 was neutralized in an antibody concentration-dependent manner by a monoclonal antibody specific to the flavivirus fusion loop and two antibodies specific to the E domain III, which closely resembled the neutralization patterns employing the LucSIP and wild-type DENV2. Parallel analysis of LucDENV2 and wild-type DENV2 revealed good agreement between the luciferase-based and focus-based neutralization and enhancement assays in a 96-well microplate format when employed against a set of clinical sera, suggesting comparable antigenic properties of LucDENV2 with those of the parent virus. The high-titer, replication competent, luciferase-secreting DENV reporter presented here should be a useful tool for fast and reliable quantitation of neutralizing and infection-enhancing antibodies in populations living in DENV-endemic areas., (Copyright © 2022 Elsevier B.V. All rights reserved.)
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- 2022
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25. The efficacy of infrared filter window film to prevent hyperthermia in neonatal hyperbilirubinemia with conventional phototherapy: a randomized control trial.
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Treesirichod A, Eiamkulbutr S, Laohathai P, Vongbhavit K, and Panburana J
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- Bilirubin, Humans, Infant, Newborn, Phototherapy, Hyperbilirubinemia, Neonatal therapy, Hyperthermia, Induced
- Abstract
Background: Phototherapy is the first-line treatment of neonatal hyperbilirubinemia. Possible side effects caused by phototherapy include hyperthermia and dehydration. Currently, there are many types of infrared blocking film for potential use in reducing infrared radiation exposure and preventing hyperthermia. This study aims to evaluate the efficacy of infrared blocking film in preventing hyperthermia during the first 24 h of phototherapy., Methods: The randomized controlled trial study was carried out in 44 newborns with hyperbilirubinemia. Infrared filter film with 75% visible light transmission and 90% infrared rejection was used in the study. Body temperature was measured for the assessment of the efficacy of filter film from axillary and rectal routes., Results: There was a significantly lower incidence of hyperthermia from the axillary temperature in the group with infrared blocking film compared to the control group (p = 0.031). The axillary temperature between before and after initiation of phototherapy in filter film group was significantly better (p = 0.008). According to efficacy of treatment, the study demonstrated that infrared filter film did not interfere with the efficacy of phototherapy in reducing bilirubin level., Conclusions: The infrared filter film was significantly more effective in preventing hyperthermia from phototherapy in the first 24 h without causing any significant difference in reduction of bilirubin level., Thai Clinical Trials Registry: TCTR20190619001., Competing Interests: Declaration of competing interest We have no conflict of interest to declare., (Copyright © 2022 Taiwan Pediatric Association. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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26. Haplotype variants of Sr46 in Aegilops tauschii, the diploid D genome progenitor of wheat.
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Athiyannan N, Long Y, Kang H, Chandramohan S, Bhatt D, Zhang Q, Klindworth DL, Rouse MN, Friesen TL, McIntosh R, Zhang P, Forrest K, Hayden M, Patpour M, Hovmøller MS, Hickey LT, Ayliffe M, Cai X, Lagudah ES, Periyannan S, and Xu SS
- Subjects
- Amino Acids, Chromosome Mapping, Chromosomes, Plant, Diploidy, Disease Resistance genetics, Genes, Plant, Haplotypes, Plant Diseases genetics, Puccinia, Aegilops genetics, Basidiomycota
- Abstract
Key Message: Stem rust resistance genes, SrRL5271 and Sr672.1 as well as SrCPI110651, from Aegilops tauschii, the diploid D genome progenitor of wheat, are sequence variants of Sr46 differing by 1-2 nucleotides leading to non-synonymous amino acid substitutions. The Aegilops tauschii (wheat D-genome progenitor) accessions RL 5271 and CPI110672 were identified as resistant to multiple races (including the Ug99) of the wheat stem rust pathogen Puccinia graminis f. sp. tritici (Pgt). This study was conducted to identify the stem rust resistance (Sr) gene(s) in both accessions. Genetic analysis of the resistance in RL 5271 identified a single dominant allele (SrRL5271) controlling resistance, whereas resistance segregated at two loci (SR672.1 and SR672.2) for a cross of CPI110672. Bulked segregant analysis placed SrRL5271 and Sr672.1 in a region on chromosome arm 2DS that encodes Sr46. Molecular marker screening, mapping and genomic sequence analysis demonstrated SrRL5271 and Sr672.1 are alleles of Sr46. The amino acid sequence of SrRL5271 and Sr672.1 is identical but differs from Sr46 (hereafter referred to as Sr46_h1 by following the gene nomenclature in wheat) by a single amino acid (N763K) and is thus designated Sr46_h2. Screening of a panel of Ae. tauschii accessions identified an additional allelic variant that differed from Sr46_h2 by a different amino acid (A648V) and was designated Sr46_h3. By contrast, the protein encoded by the susceptible allele of Ae. tauschii accession AL8/78 differed from these resistance proteins by 54 amino acid substitutions (94% nucleotide sequence gene identity). Cloning and complementation tests of the three resistance haplotypes confirmed their resistance to Pgt race 98-1,2,3,5,6 and partial resistance to Pgt race TTRTF in bread wheat. The three Sr46 haplotypes, with no virulent races detected yet, represent a valuable source for improving stem resistance in wheat., (© 2022. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
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- 2022
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27. Adult plant stem rust resistance in durum wheat Glossy Huguenot: mapping, marker development and validation.
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Mago R, Chen C, Xia X, Whan A, Forrest K, Basnet BR, Perera G, Chandramohan S, Randhawa M, Hayden M, Bansal U, Huerta-Espino J, Singh RP, Bariana H, and Lagudah E
- Subjects
- Australia, Chromosome Mapping, Disease Resistance genetics, Plant Diseases genetics, Plant Stems genetics, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Basidiomycota physiology, Triticum genetics
- Abstract
Key Message: Adult plant stem rust resistance locus, QSrGH.cs-2AL, was identified in durum wheat Glossy Huguenot and mendelised as Sr63. Markers closely linked with Sr63 were developed. An F
3 population from a Glossy Huguenot (GH)/Bansi cross used in a previous Australian study was advanced to F6 for molecular mapping of adult plant stem rust resistance. Maturity differences among F6 lines confounded assessments of stem rust response. GH was crossed with a stem rust susceptible F6 recombinant inbred line (RIL), GHB14 (M14), with similar maturity and an F6:7 population was developed through single seed descent method. F7 and F8 RILs were tested along with the parents at different locations. The F6 individual plants and both parents were genotyped using the 90 K single nucleotide polymorphism (SNP) wheat array. Stem rust resistance QTL on the long arms of chromosomes 1B (QSrGH.cs-1BL) and 2A (QSrGH.cs-2AL) were detected. QSrGH.cs-1BL and QSrGH.cs-2AL were both contributed by GH and explained 22% and 18% adult plant stem rust response variation, respectively, among GH/M14 RIL population. RILs carrying combinations of these QTL reduced more than 14% stem rust severity compared to those that possessed QSrGH.cs-1BL and QSrGH.cs-2AL individually. QSrGH.cs1BL was demonstrated to be the same as Sr58/Lr46/Yr29/Pm39 through marker genotyping. Lines lacking QSrGH.cs-1BL were used to Mendelise QSrGH.cs-2AL. Based on genomic locations of previously catalogued stem rust resistance genes and the QSrGH.cs-2AL map, it appeared to represent a new APR locus and was permanently named Sr63. SNP markers associated with Sr63 were converted to kompetetive allele-specific PCR (KASP) assays and were validated on a set of durum cultivars., (© 2022. Crown.)- Published
- 2022
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28. Assessment of the Toronto Psoriatic Arthritis Screen 2 as a Screening Tool for Psoriasis.
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Taylor JH, Deo M, Sutton M, Chandran V, Shanmugarajah S, Pereira D, Gladman DD, and Rosen CF
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- Humans, Mass Screening methods, Quality of Life, Surveys and Questionnaires, Arthritis, Psoriatic diagnosis, Psoriasis diagnosis
- Abstract
Background: Psoriasis is a chronic inflammatory disease affecting multiple organ systems and resulting in reduced quality of life for many patients. A screening tool would be useful, particularly in underserviced or research settings with limited access to dermatologists. The Toronto Psoriatic Arthritis Screen, version 2 (ToPAS 2) is a validated screening tool for psoriatic arthritis containing questions specific for psoriasis., Objectives: To evaluate the performance of skin-specific questions from ToPAS 2 for the diagnosis of psoriasis., Methods: Participants aged >18 were recruited from Dermatology and Family Medicine clinics and completed the ToPAS 2 questionnaire prior to being examined by a dermatologist for psoriasis. Two scoring indexes were derived from the ToPAS 2 skin-related questions using backward selection regression models. Statistical analysis was performed using receiver operating characteristic (ROC) curves to measure their performances., Results: Two hundred and fifty eight participants were recruited. 32 (12%) were diagnosed with psoriasis by dermatologist assessment. Index 1 includes all 5 skin-related questions from ToPAS 2, while Index 2 includes three of the five questions. Both indexes demonstrate high specificity (82% to 92%), sensitivity (69% to 84%), and excellent negative predictive value (NPV) (>95%) for a diagnosis of psoriasis. The overall discriminatory power of these models is 0.823 (Index 1) and 0.875 (Index 2)., Conclusions: Skin-related questions from ToPAS 2 have discriminatory value in detecting psoriasis, specifically questions relating to a family history, a prior physician diagnosis of psoriasis or a rash consistent with images of plaque psoriasis. This study is a valuable step in developing a screening tool for psoriasis.
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- 2022
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29. Carcinogenic Risk of Pb, Cd, Ni, and Cr and Critical Ecological Risk of Cd and Cu in Soil and Groundwater around the Municipal Solid Waste Open Dump in Central Thailand.
- Author
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Aendo P, Netvichian R, Thiendedsakul P, Khaodhiar S, and Tulayakul P
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- Adult, Cadmium, Carcinogens analysis, Child, China, Environmental Monitoring, Humans, Lead, Risk Assessment, Soil, Solid Waste, Thailand epidemiology, Waste Disposal Facilities, Groundwater, Metals, Heavy analysis, Soil Pollutants analysis
- Abstract
Several consequences of health effects from municipal solid waste caused by carcinogenic and noncarcinogenic metals have been recognized. The water quality index (WQI) in the groundwater around this landfill is 2945.58, which is unacceptable for consumption. The contaminated groundwater mainly appears within a 1 km radius around the landfill. The metal pollution levels in the soil in descending order were Cu > Cd > Zn=Cr > Pb > Ni. The pollution degree (ER) of Cd was 2898.88, and the potential ecological risk index (RI) was 2945.58, indicating that the risk level was very high. Surprisingly, the hazard index (HI) of Pb (2.05) and Fe (1.59) in children was higher than 1. This indicated that the chronic risk and cancer risk caused by Pb and Fe for children were at a medium level. Carcinogenic risk by oral (CR oral) consumption of Ni, Cd, and Cr in children was 1.4 E - 04, 2.5 E - 04, and 1.8 E - 04, respectively, while the lifetime carcinogenic risk (LCR) of Ni, Cd, and Cr in children was 1.5 E - 04, 2.8 E - 04, and 2.0 E - 04, respectively. In adults, CR oral of Ni and Cr were 1.6 E - 03 and 3.0 E - 04, respectively, while LCR of Ni and Cr were 1.6 E - 03 and 3.4 E - 04, respectively, which exceeded the carcinogenic risks limits. Our study indicated a lifetime carcinogenic risk to humans. Environmental surveillance should focus on reducing health risks such as continuous monitoring of the groundwater, soil, and leachate treatment process., Competing Interests: The authors declare that they have no conflicts of interest., (Copyright © 2022 Paweena Aendo et al.)
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- 2022
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30. Effect of dietary coated granules containing garlic oil diallyl disulphide and diallyl trisulphide on performance, in vitro digestibility and gastrointestinal functionality in laying hens.
- Author
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Rodjan P, Wattanasit S, Thongprajukaew K, and Faroongsarng D
- Subjects
- Allyl Compounds, Animal Feed analysis, Animals, Diet veterinary, Dietary Supplements, Disulfides, Escherichia coli, Female, Sulfides, Animal Nutritional Physiological Phenomena, Chickens
- Abstract
This experiment was conducted to investigate the effects of dietary supplementation with coated granules (CG) on performance, in vitro digestibility and the gastrointestinal functionality in laying hens. A total of 40 Hisex Brown laying hens (36 weeks of age) were randomly divided into five equal groups; one served as a control and the other four were actual experimental groups supplemented with 0.75, 1.5, 3 or 6 g CG per day. All the hens were fed restrictively with target feed intake of 100 g basal diet/hen per day. There were no differences in egg production or egg weight among the groups, but feed conversion ratio was significantly improved (linearly, p < 0.05) with the dose level of CG in diet. Dietary CG increased the jejunal weight (linear and quadratic terms, p < 0.05) but decreased the ileal weight (linearly, p < 0.05). There was mostly statistical interaction between dietary CG and specific activity of intestinal digestive enzymes with similar patterns for dietary CG treatments (p < 0.05). A positive linear correlation was observed with in vitro protein digestibility by using the crude enzyme extract from dietary CG supplementation. Dietary CG decreased the caecal Escherichia coli population while the Lactobacillus spp.: E. coli ratio increased (quadratic fit, p < 0.05). CG supplementation, on the other hand, significantly altered intestinal morphology by increasing the height of duodenal and ileal villi (linearly, p < 0.05). Also, duodenal antioxidant capacity observed via remaining reducing power improved linearly (p < 0.05). This suggests that CG, unlike garlic oils without encapsulation, may be a good candidate for feed supplementation in commercial egg production. It could be included up to 6 g CG per day without any adverse effects on performance, which may relate to improving nutrient digestibility and better utilization of limited feed intake when using a low amount of diet or other observations in this study., (© 2021 Wiley-VCH GmbH.)
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- 2022
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31. A Review on Occurrence and Spread of Antibiotic Resistance in Wastewaters and in Wastewater Treatment Plants: Mechanisms and Perspectives.
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Uluseker C, Kaster KM, Thorsen K, Basiry D, Shobana S, Jain M, Kumar G, Kommedal R, and Pala-Ozkok I
- Abstract
This paper reviews current knowledge on sources, spread and removal mechanisms of antibiotic resistance genes (ARGs) in microbial communities of wastewaters, treatment plants and downstream recipients. Antibiotic is the most important tool to cure bacterial infections in humans and animals. The over- and misuse of antibiotics have played a major role in the development, spread, and prevalence of antibiotic resistance (AR) in the microbiomes of humans and animals, and microbial ecosystems worldwide. AR can be transferred and spread amongst bacteria via intra- and interspecies horizontal gene transfer (HGT). Wastewater treatment plants (WWTPs) receive wastewater containing an enormous variety of pollutants, including antibiotics, and chemicals from different sources. They contain large and diverse communities of microorganisms and provide a favorable environment for the spread and reproduction of AR. Existing WWTPs are not designed to remove micropollutants, antibiotic resistant bacteria (ARB) and ARGs, which therefore remain present in the effluent. Studies have shown that raw and treated wastewaters carry a higher amount of ARB in comparison to surface water, and such reports have led to further studies on more advanced treatment processes. This review summarizes what is known about AR removal efficiencies of different wastewater treatment methods, and it shows the variations among different methods. Results vary, but the trend is that conventional activated sludge treatment, with aerobic and/or anaerobic reactors alone or in series, followed by advanced post treatment methods like UV, ozonation, and oxidation removes considerably more ARGs and ARB than activated sludge treatment alone. In addition to AR levels in treated wastewater, it examines AR levels in biosolids, settled by-product from wastewater treatment, and discusses AR removal efficiency of different biosolids treatment procedures. Finally, it puts forward key-points and suggestions for dealing with and preventing further increase of AR in WWTPs and other aquatic environments, together with a discussion on the use of mathematical models to quantify and simulate the spread of ARGs in WWTPs. Mathematical models already play a role in the analysis and development of WWTPs, but they do not consider AR and challenges remain before models can be used to reliably study the dynamics and reduction of AR in such systems., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Uluseker, Kaster, Thorsen, Basiry, Shobana, Jain, Kumar, Kommedal and Pala-Ozkok.)
- Published
- 2021
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32. Increased capsid oligomerization is deleterious to dengue virus particle production.
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Sangiambut S, Promphet N, Chaiyaloom S, Puttikhunt C, Avirutnan P, Kasinrerk W, Sittisombut N, and Malasit P
- Subjects
- Aedes, Amino Acid Sequence, Animals, Chlorocebus aethiops, Humans, Vero Cells, Virus Assembly, Virus Replication, Capsid metabolism, Capsid Proteins chemistry, Capsid Proteins metabolism, Dengue virology, Dengue Virus metabolism
- Abstract
The capsid protein (C) of dengue virus is required for viral infectivity as it packages viral RNA genome into infectious particles. C exists as a homodimer that forms via hydrophobic interactions between the α2 and α4 helices of monomers. To identify C region(s) important for virus particle production, a complementation system was employed in which single-round infectious particles are generated by trans -encapsidation of a viral C-deleted genome by recombinant C expressed in mosquito cells. Mutants harbouring a complete α3 deletion, or a dual Ile65-/Trp69-to-Ala substitution in the α3 helix, exhibited reduced production of infectious virus. Unexpectedly, higher proportions of oligomeric C were detected in cells expressing both mutated forms as compared with the wild-type counterpart, indicating that the α3 helix, through its internal hydrophobic residues, may down-modulate oligomerization of C during particle formation. Compared with wild-type C, the double Ile65-/Trp69 to Ala mutations appeared to hamper viral infectivity but not C and genomic RNA incorporation into the pseudo-infectious virus particles, suggesting that increased C oligomerization may impair DENV replication at the cell entry step.
- Published
- 2021
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33. A recombined Sr26 and Sr61 disease resistance gene stack in wheat encodes unrelated NLR genes.
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Zhang J, Hewitt TC, Boshoff WHP, Dundas I, Upadhyaya N, Li J, Patpour M, Chandramohan S, Pretorius ZA, Hovmøller M, Schnippenkoetter W, Park RF, Mago R, Periyannan S, Bhatt D, Hoxha S, Chakraborty S, Luo M, Dodds P, Steuernagel B, Wulff BBH, Ayliffe M, McIntosh RA, Zhang P, and Lagudah ES
- Subjects
- Chromosomes, Plant genetics, Genes, Plant, Genetic Engineering, Genetic Markers, Plant Breeding methods, Plant Diseases genetics, Plant Diseases microbiology, Plant Proteins genetics, Plant Stems microbiology, Plants, Genetically Modified genetics, Puccinia isolation & purification, Triticum genetics, Disease Resistance genetics, NLR Proteins genetics, Plants, Genetically Modified microbiology, Puccinia pathogenicity, Triticum microbiology
- Abstract
The re-emergence of stem rust on wheat in Europe and Africa is reinforcing the ongoing need for durable resistance gene deployment. Here, we isolate from wheat, Sr26 and Sr61, with both genes independently introduced as alien chromosome introgressions from tall wheat grass (Thinopyrum ponticum). Mutational genomics and targeted exome capture identify Sr26 and Sr61 as separate single genes that encode unrelated (34.8%) nucleotide binding site leucine rich repeat proteins. Sr26 and Sr61 are each validated by transgenic complementation using endogenous and/or heterologous promoter sequences. Sr61 orthologs are absent from current Thinopyrum elongatum and wheat pan genome sequences, contrasting with Sr26 where homologues are present. Using gene-specific markers, we validate the presence of both genes on a single recombinant alien segment developed in wheat. The co-location of these genes on a small non-recombinogenic segment simplifies their deployment as a gene stack and potentially enhances their resistance durability.
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- 2021
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34. Usability and Acceptability of Home-based Self-testing for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Antibodies for Population Surveillance.
- Author
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Atchison C, Pristerà P, Cooper E, Papageorgiou V, Redd R, Piggin M, Flower B, Fontana G, Satkunarajah S, Ashrafian H, Lawrence-Jones A, Naar L, Chigwende J, Gibbard S, Riley S, Darzi A, Elliott P, Ashby D, Barclay W, Cooke GS, and Ward H
- Subjects
- Adult, Antibodies, Viral, England, Humans, Population Surveillance, Self-Testing, Seroepidemiologic Studies, COVID-19, SARS-CoV-2
- Abstract
Background: This study assesses acceptability and usability of home-based self-testing for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) antibodies using lateral flow immunoassays (LFIA)., Methods: We carried out public involvement and pilot testing in 315 volunteers to improve usability. Feedback was obtained through online discussions, questionnaires, observations, and interviews of people who tried the test at home. This informed the design of a nationally representative survey of adults in England using two LFIAs (LFIA1 and LFIA2) which were sent to 10 600 and 3800 participants, respectively, who provided further feedback., Results: Public involvement and pilot testing showed high levels of acceptability, but limitations with the usability of kits. Most people reported completing the test; however, they identified difficulties with practical aspects of the kit, particularly the lancet and pipette, a need for clearer instructions and more guidance on interpretation of results. In the national study, 99.3% (8693/8754) of LFIA1 and 98.4% (2911/2957) of LFIA2 respondents attempted the test and 97.5% and 97.8% of respondents completed it, respectively. Most found the instructions easy to understand, but some reported difficulties using the pipette (LFIA1: 17.7%) and applying the blood drop to the cassette (LFIA2: 31.3%). Most respondents obtained a valid result (LFIA1: 91.5%; LFIA2: 94.4%). Overall there was substantial concordance between participant and clinician interpreted results (kappa: LFIA1 0.72; LFIA2 0.89)., Conclusions: Impactful public involvement is feasible in a rapid response setting. Home self-testing with LFIAs can be used with a high degree of acceptability and usability by adults, making them a good option for use in seroprevalence surveys., (© The Author(s) 2020. Published by Oxford University Press for the Infectious Diseases Society of America.)
- Published
- 2021
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35. Generation and characterization of luciferase-secreting, single-round infectious DENV-2 reporter for functional antibody assays.
- Author
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Junjhon J, Panyasu K, Chaiyaloom S, Saipin K, Somasa P, Sangiambut S, Puttikhunt C, Sriburi R, Keelapang P, Ekchariyawat P, Avirutnan P, Hirunpetcharat C, and Sittisombut N
- Subjects
- Animals, Antibodies, Blocking, Antibodies, Viral, Luciferases genetics, Dengue diagnosis, Dengue Virus genetics, Flavivirus
- Abstract
Flavivirus reporters provide a robust tool for viral pathogenesis studies, anti-viral drug screening, disease diagnosis and functional antibody assays. In this study, we generated a luciferase-secreting, single-round reporter virus by replacing the capsid coding region in a DENV-2 genome with the secretory form of Lucia luciferase gene to produce infectious viral particles in a stable capsid-expressing mosquito cell line. Replication of the reporter virus in trans-complementing mosquito cells was sustained for up to two weeks. There were strong correlations between the extracellular luciferase activity and infectious reporter virus inocula upon infection of mosquito and mammalian cell lines with graded quantities of the reporter virus. A set of anti-E and anti-prM monoclonal antibodies affected the infectivity of reporter virus with similar dose-effect relationships as the parent virus. This simplified version of DENV-2 reporter provides a rapid and reliable method for the detection of neutralizing and infection-enhancing antibodies against dengue virus., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
36. Application of deep neural techniques in predictive modelling for the estimation of Escherichia coli growth rate.
- Author
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Chitra M, Sutha S, and Pappa N
- Subjects
- Food-Processing Industry, Reproducibility of Results, Temperature, Escherichia coli growth & development, Models, Biological, Neural Networks, Computer
- Abstract
Aims: To develop a predictive model for Escherichia coli using deep neural networks., Methods and Results: Batch experiments are conducted at different temperatures closer to optimum value (36·5°C, 37°C, 37·5°C, 38°C and 38·5°C) to obtain the growth curves of E .coli K-12. Two primary models namely modified Gompertz and new logistic are chosen. Three secondary models namely Gaussian, nonlinear autoregressive eXogenous (NARX) model and long short-term memory (LSTM) are developed. The novelty in this paper is the development of secondary models using artificial neural network (ANN) and deep network. The performance measures chosen to compare the developed primary and secondary models are correlation coefficient (R
2 ), root-mean-square error (RMSE) and accuracy factor (Af ). Results show that modified Gompertz model has better R2 (0·99) and RMSE (0·019) when compared to new logistic model. Also, the deep network model outperforms other secondary models. Based on the primary and novel secondary model, a predictive model (tertiary model) is developed with improved accuracy and is validated., Conclusions: The proposed predictive model exhibit good validation results in terms of RMSE and R2 values and can be applied for determining the growth rate of E. coli at a particular temperature value., Significance and Impact of the Study: The proposed model can be used in food processing industries during enzyme production such as Chymosin, to predict the growth rate of E. coli as a function of temperature. Also, the developed LSTM and NARX models can be used to predict maximum specific growth rate of other microbial strains with proper training., (© 2020 The Society for Applied Microbiology.)- Published
- 2021
- Full Text
- View/download PDF
37. Encapsulation of bioactive agent (Curcumin, Moringa) in electrospun nanofibers - Some insights into recent research trends.
- Author
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Sundhari D, Dhineshbabu NR, Sutha S, and Raja Saravanan ME
- Abstract
As the epidemic of coronavirus disease (COVID-19) has spread rapidly, health organizations around the world has made wearing face mask obligatory to prevent the spread of the infections for the wellness of the society. As wearing face masks become a daily routine, the usage of cloth facemasks from textile fabric, is popular among the public. Since antiquity, textiles have been proven to be intertwined with human lives and the integrant of these crucial materials are fibers. Particularly, nanofiber fabrics manufactured by electrospinning have attracted attention, owing to the better filtration efficiency and breathability. In addition, the electrospinning process provide opportunities to fine tuning of the surface functionality through polymer chemistry and an encapsulation of bioactive agents in single step process. This review opens up a new horizon in possible textile applications especially, an active layer of bioactive agent (Curcumin and Moringa) loaded nanofibrous fabrics-based facemasks for day to day life., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2021 Elsevier Ltd. All rights reserved. Selection and peer-review under responsibility of the scientific committee of the International Conference on Smart and Sustainable Developments in Materials, Manufacturing and Energy Engineering.)
- Published
- 2021
- Full Text
- View/download PDF
38. Pb, Cd, and Cu Play a Major Role in Health Risk from Contamination in Duck Meat and Offal for Food Production in Thailand.
- Author
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Aendo P, Netvichian R, Khaodhiar S, Thongyuan S, Songserm T, and Tulayakul P
- Subjects
- Animals, Cadmium analysis, Ducks, Environmental Monitoring, Food Contamination analysis, Lead, Meat analysis, Risk Assessment, Thailand, Metals, Heavy analysis
- Abstract
Zinc, Pb, Cd, Mn, Fe, Cr, and Cu levels in duck meat from large-scale farms have been found to be significantly higher than those from free-grazing duck farms. Zinc, Co, Mn, Cr, and Cu contamination levels in duck liver from large-scale farms were significantly higher than those from free-grazing farms; only Cd in duck liver from free-grazing farms was higher than in liver samples from large-scale farms at P < 0.05. Lead, Cd, Fe, and Cr levels in duck intestine samples from free-grazing farms were higher than large-scale farms at P < 0.001. Moreover, the average concentrations of Pb in duck meat and liver samples from large-scale farms and Cd levels in duck liver samples from free-grazing farm also exceeded the FAO/WHO and Codex Alimentarius limits by 100% (55/55), 100% (54/54), and 67.6% (23/34), respectively. PCA analysis showed a strong positive relationship between the eight metals in meat, liver, and intestine was > 0.69, > 0.69, and > 0.72, in order. The relationship of the liver combined with the intestine was > 0.65. This study indicated that consumers may incur health risks from long-term consumption of duck due to high Pb and Cd concentrations from both types of farms, particularly from large-scale duck farms.
- Published
- 2020
- Full Text
- View/download PDF
39. Carcass Characteristics and Meat Quality of Betong Chicken Fed with Diets Supplemented with Crude Glycerin.
- Author
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Sopian Y, Wattanachant C, and Wattanasit S
- Abstract
Experiments were conducted to evaluate the effect of crude glycerin inclusion in the diets of Betong chicken on the characteristics of their carcasses, internal organs, meat quality, lipid oxidation, and fatty acid profiles. One hundred 1-day-old chicks were raised for 8 weeks. Subsequently, the birds were sexed based on their morphological features, and weighed. Forty-eight male chickens, with comparable body weights, were randomly allotted to receive any of the three experimental diets, containing 0, 50 or 100 g crude glycerin/kg feed, on an as fed basis until they were 20 weeks old. A total of 24 chickens were slaughtered and their carcass characteristics and meat quality were studied. Results showed that carcass characteristics and internal organ parameters were not affected by crude glycerin supplementation ( P >0.05). After chilling for 24 h, pH of the meat decreased in all groups ( P >0.05), while shear force and cooking loss were not affected ( P >0.05). Furthermore, crude glycerin did not affect the parameters such as crude protein, ether extract, ash, moisture and proportions of different fatty acid contents of meat of the Betong chicken ( P >0.05). However, breast meat color and lipid oxidation were influenced by crude glycerin in diet ( P <0.05). These results suggest that crude glycerin can be used at concentrations up to 10% in Betong chicken diet from 8 to 20 weeks of age. Nevertheless, its effect on breast meat color and lipid oxidation need to be considered., Competing Interests: The authors declare no conflict of interest., (2020, Japan Poultry Science Association.)
- Published
- 2020
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40. Adsorption, degradation, and mineralization of emerging pollutants (pharmaceuticals and agrochemicals) by nanostructures: a comprehensive review.
- Author
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Jain M, Mudhoo A, Ramasamy DL, Najafi M, Usman M, Zhu R, Kumar G, Shobana S, Garg VK, and Sillanpää M
- Subjects
- Adsorption, Agrochemicals, Environmental Pollutants, Nanostructures, Water Pollutants, Chemical, Water Purification
- Abstract
This review discusses a fresh pool of research findings reported on the multiple roles played by metal-based, magnetic, graphene-type, chitosan-derived, and sonicated nanoparticles in the treatment of pharmaceutical- and agrochemical-contaminated waters. Some main points from this review are as follows: (i) there is an extensive number of nanoparticles with diverse physicochemical and morphological properties which have been synthesized and then assessed in their respective roles in the degradation and mineralization of many pharmaceuticals and agrochemicals, (ii) the exceptional removal efficiencies of graphene-based nanomaterials for different pharmaceuticals and agrochemicals molecules support arguably well a high potential of these nanomaterials for futuristic applications in remediating water pollution issues, (iii) the need for specific surface modifications and functionalization of parent nanostructures and the design of economically feasible production methods of such tunable nanomaterials tend to hinder their widespread applicability at this stage, (iv) supplementary research is also required to comprehensively elucidate the life cycle ecotoxicity characteristics and behaviors of each type of engineered nanostructures seeded for remediation of pharmaceuticals and agrochemicals in real contaminated media, and last but not the least, (v) real wastewaters are extremely complex in composition due to the mix of inorganic and organic species in different concentrations, and the presence of such mixed species have different radical scavenging effects on the sonocatalytic degradation and mineralization of pharmaceuticals and agrochemicals. Moreover, the formulation of viable full-scale implementation strategies and reactor configurations which can use multifunctional nanostructures for the effective remediation of pharmaceuticals and agrochemicals remains a major area of further research.
- Published
- 2020
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- View/download PDF
41. A review on valorization of spent coffee grounds (SCG) towards biopolymers and biocatalysts production.
- Author
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Dattatraya Saratale G, Bhosale R, Shobana S, Banu JR, Pugazhendhi A, Mahmoud E, Sirohi R, Kant Bhatia S, Atabani AE, Mulone V, Yoon JJ, Seung Shin H, and Kumar G
- Subjects
- Biofuels, Biopolymers, Biotechnology, Coffee, Metals, Heavy
- Abstract
Spent coffee grounds (SCG) are an important waste product millions of tons generated from coffee consumption and could be effectively utilized for various applications due to their high organic content. SCG can be used as a potential feedstock to develop coffee-based biorefinery towards value-added products generation through various biotechnological processes. Considerable developments have been reported on emerging SCG-based processes/products in various environmental fields such as removal of heavy metals and cationic dyes and in wastewater treatment. In addition, SCG are also utilized to produce biochar and biofuels. This review addressed the details of innovative processes used to produce polymers and catalysts from SCG. Moreover, the application of these developed products is provided and future directions of the circular economy for SCG utilization., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2020
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42. Upcycling of Wastewater via Effective Photocatalytic Hydrogen Production Using MnO 2 Nanoparticles-Decorated Activated Carbon Nanoflakes.
- Author
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Sekar S, Lee S, Vijayarengan P, Kalirajan KM, Santhakumar T, Sekar S, and Sadhasivam S
- Abstract
In the present work, we demonstrated the upcycling technique of effective wastewater treatment via photocatalytic hydrogen production by using the nanocomposites of manganese oxide-decorated activated carbon (MnO
2 -AC). The nanocomposites were sonochemically synthesized in pure water by utilizing MnO2 nanoparticles and AC nanoflakes that had been prepared through green routes using the extracts of Brassica oleracea and Azadirachta indica, respectively. MnO2 -AC nanocomposites were confirmed to exist in the form of nanopebbles with a high specific surface area of ~109 m2 /g. When using the MnO2 -AC nanocomposites as a photocatalyst for the wastewater treatment, they exhibited highly efficient hydrogen production activity. Namely, the high hydrogen production rate (395 mL/h) was achieved when splitting the synthetic sulphide effluent (S2- = 0.2 M) via the photocatalytic reaction by using MnO2 -AC. The results stand for the excellent energy-conversion capability of the MnO2 -AC nanocomposites, particularly, for photocatalytic splitting of hydrogen from sulphide wastewater.- Published
- 2020
- Full Text
- View/download PDF
43. Review on the production of medium and small chain fatty acids through waste valorization and CO 2 fixation.
- Author
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Venkateswar Reddy M, Kumar G, Mohanakrishna G, Shobana S, and Al-Raoush RI
- Subjects
- Biofuels, Fatty Acids, Volatile, Fermentation, Carbon Dioxide, Fatty Acids
- Abstract
The developing approaches in the recovery of resources from biowastes for the production of renewable value-added products and fuels, using microbial cultures as bio-catalyst have now became promising aspect. In the path of anaerobic digestion, the microorganisms are assisting transformation of a complex organic feedstock/waste to biomass and biogas. This potentiality consequently leads to the production of intermediate precursors of renewable value-added products. Particularly, a set of anaerobic pathways in the fermentation process, yields small-chain fatty acids (SCFA), and medium-chain fatty acids (MCFA) via chain elongation pathways from waste valorization and CO
2 fixation. This review focuses on the production of SCFA and MCFA from CO2 , synthetic substrates and waste materials. Moreover, the review introduces the metabolic engineering of Escherichia coli and Saccharomyces cerevisiae for SCFAs/MCFAs production. Furtherly, it concludes that future critical research might target progress of this promising approach as a valorization of complex organic wastes., (Copyright © 2020 Elsevier Ltd. All rights reserved.)- Published
- 2020
- Full Text
- View/download PDF
44. Selective laser trabeculoplasty versus topical medication as initial glaucoma treatment: the glaucoma initial treatment study randomised clinical trial.
- Author
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Ang GS, Fenwick EK, Constantinou M, Gan ATL, Man REK, Casson RJ, Finkelstein EA, Goldberg I, Healey PR, Pesudovs K, Sanmugasundram S, Xie J, McIntosh R, Jackson J, Wells AP, White A, Martin K, Walland MJ, Crowston JG, and Lamoureux EL
- Subjects
- Female, Glaucoma physiopathology, Humans, Lasers, Solid-State therapeutic use, Male, Middle Aged, Ophthalmic Solutions, Quality of Life, Treatment Outcome, Antihypertensive Agents administration & dosage, Glaucoma therapy, Intraocular Pressure physiology, Laser Therapy methods, Trabeculectomy methods
- Abstract
Background/aims: To determine if selective laser trabeculoplasty (SLT) is superior to topical medication as a first-line treatment for glaucoma on quality of life (QoL) and clinical outcomes., Methods: In this international, longitudinal, multisite randomised controlled trial, treatment naïve mild-to-moderate primary open angle or exfoliation glaucoma patients were randomised 1:1 to SLT or topical medication. Glaucoma-specific QoL (primary outcome) was measured using the Glaucoma Outcomes Assessment Tool (GOAT; 342 items, 12 domains). Secondary outcomes included rate of successful intraocular pressure (IOP) reduction (>25% reduction from baseline) and presence of ocular surface disease including conjunctival hyperaemia and eyelid erythema. Our intention-to-treat analysis was performed at months 12 and 24., Results: Of 167 enrolled patients, 83 and 84 were randomised to SLT and topical medication, respectively; and 145 (n=75 SLT, n=70 medication) completed 24-month follow-up. While both treatment arms achieved significant within-group gains in GOAT outcomes at both endpoints, SLT patients reported a greater between-group improvement in 'social well-being' compared with medication patients (mean±SE=0.28±0.13; p=0.034) at 24 months. At month 24, the rate of successful IOP reduction was 18.6% (95% CI 3.0% to 34.3%, p=0.022) higher (absolute difference) in the medication compared with SLT group. More individuals in the medication group had conjunctival hyperaemia and eyelid erythema compared with SLT at 24 months., Conclusion: Overall, we did not find evidence that SLT was superior to medication in improving glaucoma-specific QoL. While we found superior IOP reduction in the medication arm, eyelid erythema and conjunctival hyperaemia were more prevalent in these patients compared with the SLT group., Trial Registration: ACTRN12611000720910., Competing Interests: Competing interests: IG has the following conflicts of interest to declare: Advisory Board member for Allergan, Novartis, Mundipharma; Speaker Bureau for Allergan, Novartis; Travel support from Pfizer. KM has the following conflicts of interest to declare: Consultant to Allergan, Novartis, Quethera, Sensimed., (© Author(s) (or their employer(s)) 2020. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2020
- Full Text
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45. A Survey on Machine Learning Algorithms for the Diagnosis of Breast Masses with Mammograms.
- Author
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Gnanasekaran VS, Joypaul S, and Sundaram PM
- Subjects
- Algorithms, Breast Neoplasms, Diagnosis, Computer-Assisted, Female, Humans, Neural Networks, Computer, Radiologists, Surveys and Questionnaires, Breast diagnostic imaging, Machine Learning, Mammography
- Abstract
Breast cancer is leading cancer among women for the past 60 years. There are no effective mechanisms for completely preventing breast cancer. Rather it can be detected at its earlier stages so that unnecessary biopsy can be reduced. Although there are several imaging modalities available for capturing the abnormalities in breasts, mammography is the most commonly used technique, because of its low cost. Computer-Aided Detection (CAD) system plays a key role in analyzing the mammogram images to diagnose the abnormalities. CAD assists the radiologists for diagnosis. This paper intends to provide an outline of the state-of-the-art machine learning algorithms used in the detection of breast cancer developed in recent years. We begin the review with a concise introduction about the fundamental concepts related to mammograms and CAD systems. We then focus on the techniques used in the diagnosis of breast cancer with mammograms., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
- Published
- 2020
- Full Text
- View/download PDF
46. Enhanced production of infectious particles by adaptive modulation of C-prM processing and C-C interaction during propagation of dengue pseudoinfectious virus in stable CprME-expressing cells.
- Author
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Sangiambut S, Pethrak C, Anupap C, Ninnabkaew P, Kongsanthia C, Promphet N, Chaiyaloom S, Songjaeng A, Avirutnan P, Puttikhunt C, Kasinrerk W, Sittisombut N, and Malasit P
- Subjects
- Amino Acid Sequence, Animals, Capsid Proteins genetics, Cell Line, Chlorocebus aethiops, Culicidae virology, Dengue virology, RNA, Viral genetics, Vero Cells, Virus Replication genetics, Dengue Virus genetics, Nucleocapsid genetics, Viral Envelope Proteins genetics, Viral Nonstructural Proteins genetics, Virus Assembly genetics
- Abstract
Dengue virus assembly involves the encapsidation of genomic RNA by the capsid protein (C) and the acquisition of an envelope comprising the premembrane (prM) and envelope (E) glycoproteins. This rapid process, lacking in detectable nucleocapsid intermediates, may impose authentic C-prM-E arrangement as a prerequisite for efficient particle assembly. A mosquito cell-based complementation system was employed in this study to investigate the possibility that expression of the three structural proteins in trans allows the efficient production of a partially C-deleted dengue virus as compared to the presence of C alone. Following the transfection of ΔC56-capped RNA transcripts into C6/36 cells transiently expressing C or CprME, the production of the single-cycle virus was comparable. Subsequent propagation in the stable CprME-expressing clone, however, supported virus adaptation leading to acquisition of the L29P and S101F (PF) dual mutations in the C protein. The triple mutant, ΔC56(PF), exhibited enhanced levels of virus replication, specific infectivity and frequent increases of intracellular C dimer, as compared with ΔC56 in the CprME-clone. The PF mutations were associated with the accumulation of truncated CprM in ΔC56(PF)-infected cells, and uncleaved CprM as well as reduced intracellular C-dimer when the dual mutations were introduced into the wild-type dengue virus genetic background. These results indicate that the PF mutations may exert a replication-enhancing effect for the triple mutant virus by relieving the interference of trans -complementing structural proteins during viral assembly and suggest that the C-prM-E arrangement may be advantageous for pseudoinfectious virus production.
- Published
- 2020
- Full Text
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47. Multimedia-aided instruction in teaching basic life support to undergraduate nursing students.
- Author
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Junsawang C, Jittivadhna K, Luealamai S, and Pookboonmee R
- Subjects
- Humans, Cardiopulmonary Resuscitation education, Cardiopulmonary Resuscitation methods, Computer-Assisted Instruction methods, Education, Nursing, Baccalaureate methods, Multimedia, Students, Nursing
- Abstract
Basic life support (BLS) knowledge is a necessity for nursing students, as they have to deal with cardiac arrest events during their professional career. Existing studies indicate poor BLS knowledge among health science students, including nursing students. Learning BLS requires an understanding of basic sciences, such as anatomy, physiology, and biochemistry, subjects perceived to be difficult, resulting in misconceptions. Hence, a multimedia-aided instruction on BLS, supplemented with cooperating learning groups, was developed to assist nursing students in gaining correct BLS knowledge. A pretest-posttest designed for single cooperating groups was employed to evaluate students' achievements. Sixty-five undergraduate nursing students took the pretest and posttest that consisted of 10 open-ended questions, each designed to evaluate an aspect of their BLS knowledge. The results show significantly more students (60 vs. 20%) answered more questions correctly on the posttest compared with the pretest ( P value <0.05, Wilcoxon signed-rank test). Thus the multimedia-aided instruction package enhanced undergraduate nursing students' understanding of BLS and also assisted to generate a positive perception of multimedia-aided instructions, supplemented with a cooperating learning group.
- Published
- 2019
- Full Text
- View/download PDF
48. A review on the conversion of volatile fatty acids to polyhydroxyalkanoates using dark fermentative effluents from hydrogen production.
- Author
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Kumar G, Ponnusamy VK, Bhosale RR, Shobana S, Yoon JJ, Bhatia SK, Rajesh Banu J, and Kim SH
- Subjects
- Biopolymers, Fatty Acids, Volatile, Fermentation, Hydrogen, Polyhydroxyalkanoates
- Abstract
The production of bio/microbial-based polymers, polyhydroxyalkanoates (PHAs) from volatile fatty acids (VFAs) of dark fermentative effluents in the bio-H
2 reactor is being paid attention, owing to their commercial demand, applications and as carbon as well as energy storage source. Since, they are the cheap precursors for such valuable renewable biopolymers which all possess the properties; those are analogous to the petro-derived plastics. Several studies were stated, related to the consumption of both individual and mixed VFAs for the potential PHAs production. Their biodegradability nature makes them extremely desirable alternative to fossil-derived synthetic polymers. In this regard, this review summarizes the use of bio-based PHAs production via both microbial and biochemical pathways using dark fermentative bio-H2 production from waste streams as feedstock. Furthermore, this review deals the characteristics, synthesis and production of the bio-based PHAs along with their co-polymers and applications to give an outlook on future research., (Copyright © 2019 Elsevier Ltd. All rights reserved.)- Published
- 2019
- Full Text
- View/download PDF
49. Adsorption of single and mixed haloacetonitriles on silica-based porous materials: Mechanisms and effects of porous structures.
- Author
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Prarat P, Ngamcharussrivichai C, Khaodhiar S, and Punyapalakul P
- Subjects
- Adsorption, Disinfection, Hydrophobic and Hydrophilic Interactions, Models, Chemical, Porosity, Water Purification, Acetonitriles chemistry, Silicon Dioxide chemistry, Titanium chemistry, Water Pollutants, Chemical chemistry, Zeolites chemistry
- Abstract
Adsorption mechanisms and the role of different porous and crystalline structures on the removal of five haloacetonitriles (HANs) over hexagonal mesoporous silica (HMS), titanium substituted mesoporous silica (Ti-HMS), rod-shaped SBA-15 and microporous zeolite NaY were investigated. In addition, the effect of pH on adsorption mechanism and selective adsorption of five HANs individually and in an equimolar mixed solution were evaluated. The results indicated that the intraparticle diffusion rate constants of the mesoporous adsorbents were higher than that of the microporous NaY. In single solute, the order of adsorption preference (highest to lowest) was mono-HANs > di-HANs > tri-HAN. However, in mixed solute, the large molecular weight of the tri-HAN and di-HANs are more easily adsorbed than the smaller molecular weight mono-HANs. Except for SBA-15, the order of adsorption capacities in mixed HANs solute was not different compared to that observed for the single HAN solute, which might be caused by the higher accessibility to the active sites due to larger pore size. The ion-dipole electrostatic interaction was likely to be the main adsorption mechanism, and was favored at high pH values due to the high negative surface charge density of the adsorbent. The molecular structure of the HANs and hydrophilic/hydrophobic nature affected the adsorption capacities and their selective adsorption from mixed solutes., (Copyright © 2018. Published by Elsevier B.V.)
- Published
- 2019
- Full Text
- View/download PDF
50. Resistance gene cloning from a wild crop relative by sequence capture and association genetics.
- Author
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Arora S, Steuernagel B, Gaurav K, Chandramohan S, Long Y, Matny O, Johnson R, Enk J, Periyannan S, Singh N, Asyraf Md Hatta M, Athiyannan N, Cheema J, Yu G, Kangara N, Ghosh S, Szabo LJ, Poland J, Bariana H, Jones JDG, Bentley AR, Ayliffe M, Olson E, Xu SS, Steffenson BJ, Lagudah E, and Wulff BBH
- Subjects
- Chromosome Mapping, Genetic Association Studies, Genetic Variation, Genomics, Genotype, Models, Genetic, Phenotype, Phylogeny, Polymorphism, Single Nucleotide, Seedlings, Triticum genetics, Cloning, Molecular, Crops, Agricultural genetics, Disease Resistance genetics, Genes, Plant, Plant Diseases genetics
- Abstract
Disease resistance (R) genes from wild relatives could be used to engineer broad-spectrum resistance in domesticated crops. We combined association genetics with R gene enrichment sequencing (AgRenSeq) to exploit pan-genome variation in wild diploid wheat and rapidly clone four stem rust resistance genes. AgRenSeq enables R gene cloning in any crop that has a diverse germplasm panel.
- Published
- 2019
- Full Text
- View/download PDF
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