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Here we report on compression experiments of colloidal pillars in which the evolution of a shear band can be followed at the particle level during deformation. Quasistatic deformation results in dilation and anisotropic changes in coordination in a localized band of material. Additionally, a transition from solid- to liquidlike mechanical response accompanies the structural change in the band, as evidenced by saturation of the packing fraction at the glass transition point, a diminishing ability to host anelastic strains, and a rapid decay in the long-range strain correlations. Overall, our results suggest that shear banding quantitatively resembles a localized, driven glass transition.

Soil creeps imperceptibly downhill, but also fails catastrophically to create landslides. Despite the importance of these processes as hazards and in sculpting landscapes, there is no agreed-upon model that captures the full range of behavior. Here we examine the granular origins of hillslope soil transport by discrete element method simulations and reanalysis of measurements in natural landscapes. We find creep for slopes below a critical gradient, where average particle velocity (sediment flux) increases exponentially with friction coefficient (gradient). At critical gradient there is a continuous transition to a dense-granular flow rheology. Slow earthflows and landslides thus exhibit glassy dynamics characteristic of a wide range of disordered materials; they are described by a two-phase flux equation that emerges from grain-scale friction alone. This glassy model reproduces topographic profiles of natural hillslopes, showing its promise for predicting hillslope evolution over geologic timescales., Competing Interests: The authors declare no conflict of interest., (Copyright © 2018 the Author(s). Published by PNAS.)

River bed-load transport is a kind of dense granular flow, and such flows are known to segregate grains. While gravel-river beds typically have an "armoured" layer of coarse grains on the surface, which acts to protect finer particles underneath from erosion, the contribution of granular physics to river-bed armouring has not yet been investigated. Here we examine these connections in a laboratory river with bimodal sediment size, by tracking the motion of particles from the surface to deep inside the bed, and find that armour develops by two distinct mechanisms. Bed-load transport in the near-surface layer drives rapid, shear rate-dependent advective segregation. Creeping grains beneath the bed-load layer give rise to slow but persistent diffusion-dominated segregation. We verify these findings with a continuum phenomenological model and discrete element method simulations. Our experiments suggest that some river-bed armouring may be due to granular segregation from below-rather than fluid-driven sorting from above-while also providing new insights on the mechanics of segregation that are relevant to a wide range of granular flows.

We investigate the coupling between the interstitial medium and granular particles by studying the hopper flow of dry and submerged systems experimentally and numerically. In accordance with earlier studies, we find that the dry hopper empties at a constant rate. However, in the submerged system we observe the surging of the flow rate. We model both systems using the discrete element method, which we couple with computational fluid dynamics in the case of a submerged hopper. We are able to match the simulations and the experiments with good accuracy by fitting the particle-particle contact friction for each system separately. Submerging the hopper changes the particle-particle contact friction from μ vacuum = 0.15 to μ sub = 0.13, while all the other simulation parameters remain the same.

Colloidal aggregation is a canonical example of disordered growth far from equilibrium and has been extensively studied for the case of spherical monomers. Many particles encountered in industry and the environment are highly elongated; however, the control of particle shape on aggregation kinetics and structure is not well-known. Here, we explore this control in laboratory experiments that document aqueous diffusion and aggregation of two different elongated colloids: natural asbestos fibers and synthetic glass rods, with similar aspect ratios of about 5:1. We also perform control runs with glass spheres of similar size (∼1 μm). The aggregates assembled from the elongated particles are noncompact, with morphologies and growth rates that differ markedly from the classical aggregation dynamics observed for spherical monomers. The results for asbestos and glass rods are remarkably similar, demonstrating the primacy of shape over material properties-suggesting that our findings may be extended to other elongated colloids such as carbon nanotubes/fibers. This study may lead to enhanced prediction of the transport and fate of colloidal contaminants in the environment, which are strongly influenced by the growth and structure of aggregates.

Fluid-sheared granular transport sculpts landscapes and undermines infrastructure, yet predicting the onset of sediment transport remains notoriously unreliable. For almost a century, this onset has been treated as a discontinuous transition at which hydrodynamic forces overcome gravity-loaded grain-grain friction. Using a custom laminar-shear flume to image slow granular dynamics deep into the bed, here we find that the onset is instead a continuous transition from creeping to granular flow. This transition occurs inside the dense granular bed at a critical viscous number, similar to granular flows and colloidal suspensions and inconsistent with hydrodynamic frameworks. We propose a new phase diagram for sediment transport, where 'bed load' is a dense granular flow bounded by creep below and suspension above. Creep is characteristic of disordered solids and reminiscent of soil diffusion on hillslopes. Results provide new predictions for the onset and dynamics of sediment transport that challenge existing models.

Thermal fluctuations, geometric exclusion, and external driving all govern the mechanical response of dense particulate suspensions. Here, we measure the stress-strain response of quasi-two-dimensional flow-stabilized microsphere heaps in a regime in which all three effects are present using a microfluidic device. We observe that the elastic modulus and the mean interparticle separation of the heaps are tunable via the confining stress provided by the fluid flow. Furthermore, the measured stress-strain curves exhibit a universal nonlinear shape, which can be predicted from a thermal van der Waals equation of state with excluded volume. This analysis indicates that many-body interactions contribute a significant fraction of the stress supported by the heap.

We present an analytic technique for probing protein-catalyzed transient DNA loops that is based on nanofluidic channels. In these nanochannels, DNA is forced in a linear configuration that makes loops appear as folds whose size can easily be quantified. Using this technique, we study the interaction between T4 DNA ligase and DNA. We find that T4 DNA ligase binding changes the physical characteristics of the DNApolymer, in particular persistence length and effective width. We find that the rate of DNA fold unrolling is significantly reduced when T4 DNA ligase and ATP are applied to bare DNA. Together with evidence of T4 DNA ligase bridging two different segments of DNA based on AFM imaging, we thus conclude that ligase can transiently stabilize folded DNA configurations by coordinating genetically distant DNA stretches.