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Octacalcium phosphate (OCP), which is one of the bioactive calcium phosphates, can incorporate various organic molecules in its crystal lattice, forming the organic-inorganic hybrid derivatives. However, detailed atomic arrangements of OCP hybridized with organic molecules such as dicarboxylate are still unknown, although many years have passed since the first discovery of the materials systems. In the present study, some black-box optimization methods combined with first-principles calculations were used to theoretically identify the most stable atomic structure of the OCP with the incorporation of malonate ions as a typical case study. The results showed that the calculated interplanar spacing on the (100) plane of the most stable structure agrees well with experimental data, by taking account of implicit solvent of aqueous solution. An underlying mechanism that realizes the bridging feature of the incorporated malonate ions between the apatitic layers is also discussed. The present methodology can pave the way to accurately explore reliable atomic structures of such complicated organic-inorganic hybrid biomaterials with high structural degrees of freedom.

To accurately predict grain boundary (GB) atomic structures and their energetics in CdTe, the present study constructs an artificial-neural-network (ANN) interatomic potential. To cover a wide range of atomic environments, large amounts of density functional theory (DFT) data are used as a training dataset including point defects, surfaces and GBs. Structural relaxation combined with the trained ANN potential is applied to symmetric tilt and twist GBs, many of which are not included in the training dataset. The relative stability of the relaxed structures and their GB energies are then evaluated with the DFT level. The ANN potential is found to accurately predict low-energy structures and their energetics with reasonable accuracy with respect to DFT results, while conventional empirical potentials critically fail to find low-energy structures. The present study also provides a way to further improve the transferability of the ANN potential to more complicated GBs, using only low- Σ GBs as training datasets. Such improvement will offer a way to accurately predict atomic structures of general GBs within practical computational cost.

Grain boundary (GB) migration plays an important role in modifying the microstructures and the related properties of polycrystalline materials, and is governed by the atomistic mechanism by which the atoms are displaced from one grain to another. Although such an atomistic mechanism has been intensively investigated, it is still experimentally unclear as to how the GB migration proceeds at the atomic scale. With the aid of high-energy electron-beam irradiation in atomic-resolution scanning transmission electron microscopy, we controllably triggered the GB migration in α-Al 2 O 3 and directly visualized the atomistic GB migration as a stop motion movie. It was revealed that the GB migration proceeds by the cooperative shuffling of atoms on GB ledges along specific routes, passing through several different stable and metastable GB structures with low energies. We demonstrated that GB migration could be facilitated by the GB structural transformations between these low-energy structures.

The introduction of dislocations is a recently proposed strategy to tailor the functional and especially the electrical properties of ceramics. While several works confirm a clear impact of dislocations on electrical conductivity, some studies raise concern in particular when expanding to dislocation arrangements beyond a geometrically tractable bicrystal interface. Moreover, the lack of a complete classification on pertinent dislocation characteristics complicates a systematic discussion and hampers the design of dislocation-modified electrical conductivity. We proceed by mechanically introducing dislocations with three different mesoscopic structures into the model material single-crystal SrTiO 3 and extensively characterizing them from both a mechanical as well as an electrical perspective. As a final result, a deconvolution of mesoscopic structure, core structure, and space charge enables us to obtain the complete picture of the effect of dislocations on functional properties, focusing here on electric properties.

It was recently found that extremely large plasticity is exhibited in bulk compression of single-crystal ZnS in complete darkness. Such effects are believed to be caused by the interactions between dislocations and photoexcited electrons and/or holes. However, methods for evaluating dislocation behavior in such semiconductors with small dimensions under a particular light condition had not been well established. Here, we propose the "photoindentation" technique to solve this issue by combining nanoscale indentation tests with a fully controlled lighting system. The quantitative data analyses based on this photoindentation approach successfully demonstrate that the first pop-in stress indicating dislocation nucleation near the surface of ZnS clearly increases by light irradiation. Additionally, the room-temperature indentation creep tests show a drastic reduction of the dislocation mobility under light. Our approach demonstrates great potential in understanding the light effects on dislocation nucleation and mobility at the nanoscale, as most advanced technology-related semiconductors are limited in dimensions.

Chromium germanides, namely, Nowotny chimney-ladder-phase CrGe 1.77 and MoSi 2 -type CrGe 2 , were synthesized above 15 GPa or more via laser heating using a diamond anvil cell (LHDAC). MoSi 2 -type CrGe 2 , which is the most Ge-rich compound in the Cr-Ge system, crystallizes in the tetragonal structure with a space group of I 4/ mmm (no. 139) and lattice parameters of a = 3.24919(6) Å and c = 8.0523(3) Å and is isostructural with MoSi 2 . MoSi 2 -type CrGe 2 has a deep pseudogap caused by the splitting of 3d orbitals with Cr, as evidenced by ab initio calculation. In this article, we have succeeded in synthesizing a binary compound between transition-metal and metalloid elements for the first time at high pressures above 10 GPa using the LHDAC. This pathway opens the possibility to explore more compounds in this system and may provide new insights into the fundamental interaction between these two elements.

Control of heterointerfaces in advanced composite materials is of scientific and industrial importance, because their interfacial structures and properties often determine overall performance and reliability of the materials. Here distinct improvement of mechanical properties of alumina-matrix tungsten-carbide composites, which is expected for cutting-tool application for aerospace industries, is achieved via interfacial atomic segregation. It is found that only a small amount of Zr addition is unexpectedly effective to significantly increase their mechanical properties, and especially their bending strength reaches values far beyond those of conventional superhard composite materials. Atomic-resolution STEM observations show that doped Zr atoms are preferentially located only at interfaces between Al 2 O 3 and WC grains, forming atomic segregation layers. DFT calculations indicate favorable thermodynamic stability of the interfacial Zr segregation due to structural transition at the interface. Moreover, theoretical works of separation demonstrate remarkable increase in interfacial strength through the interfacial structural transition, which strongly supports reinforcement of the interfaces by single-layer Zr segregation.

Grain boundaries (GBs) modulate the macroscopic properties in polycrystalline materials because they have different atomic and electronic structures from the bulk. Despite the progress on the understanding of GB atomic structures, knowledge of the localized electronic band structures is still lacking. Here, we experimentally characterized the atomic structures and the band gaps of four typical GBs in α-Al 2 O 3 by scanning transmission electron microscopy and valence electron energy-loss spectroscopy (EELS). It was found that the band gaps of the GBs are narrowed by 0.5-2.1 eV compared with that of 8.8 eV in the bulk. By combing core-loss EELS with first-principles calculations, we elucidated that the band gap reductions directly correlate with the decrease of the coordination numbers of Al and O ions at the GBs. These results provide in-depth understanding between the local atomic and electronic band structures for GBs and demonstrate a novel electronic-structure analysis for crystalline defects.

Inorganic semiconductors generally tend to fail in a brittle manner. Here, we report that extraordinary "plasticity" can take place in an inorganic semiconductor if the deformation is carried out "in complete darkness." Room-temperature deformation tests of zinc sulfide (ZnS) were performed under varying light conditions. ZnS crystals immediately fractured when they deformed under light irradiation. In contrast, it was found that ZnS crystals can be plastically deformed up to a deformation strain of ε t = 45% in complete darkness. In addition, the optical bandgap of the deformed ZnS crystals was distinctly decreased after deformation. These results suggest that dislocations in ZnS become mobile in complete darkness and that multiplied dislocations can affect the optical bandgap over the whole crystal. Inorganic semiconductors are not necessarily intrinsically brittle., (Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)

Atomic adsorption of Au and Pt on the rutile (1 1 0) surface was investigated by atomic-resolution aberration-corrected scanning transmission electron microscopy (STEM) measurements combined with density functional theory calculations. Au single atoms were deposited on the surface in a vacuum condition, and the observed results were compared with Pt single atoms on the same surface prepared by the same experimental manner. It was found that Au single atoms are stably adsorbed only at the bridging oxygen vacancy sites, which is quite different from Pt single atoms exhibiting the most frequently observed adsorption at the basal oxygen vacancy sites. Such a difference in oxygen-vacancy effect between Au and Pt can be explained by electronic structures of the surface vacancies as well as characters of outermost atomic orbitals of Au and Pt.

Oxygen-ion conduction in apatite-type lanthanum silicate, La9.33+0.67x (SiO4)6O2+x (x = 1), has theoretically been analyzed in a first-principles manner followed by the nudged elastic band method and the kinetic Monte Carlo method. Unlike the conventional cooperative interstitialcy mechanism along the single O4 columns, diffusing interstitial oxygen ions are frequently blocked by adjacent interstitial oxygen ions (Oint ions), leading to the strongly-correlated diffusivity and conductivity of oxygen ions in the case of chemical compositions with large x values. The getting-out mechanism from the O4 column is of importance in the long-range conduction, which temporarily transfers a part of Oint ions out of the columns to relax the blocking effect. The getting-out mechanism plays a key role also in the conduction perpendicular to the c axis (in the ab plane).

First-principles calculations were carried out to reveal local atomic arrangements and thermodynamic stability of substitutional divalent cations of Mg(2+), Zn(2+), Sr(2+) and Ba(2+) in tricalcium phosphates (TCPs). There are two modifications of α-TCP and β-TCP, and a number of inequivalent Ca sites are present in the crystal structures. It was found that each divalent cation has energetically preferential Ca sites for substitution. For instance, Mg(2+) and Zn(2+) favor the substitution at the Ca-5 site of β-TCP while Sr(2+) and Ba(2+) tend to occupy Ca-3 and Ca-4 in the β-type crystal structure. The calculated site preference of these cations was in reasonable agreement with available experimental data. Moreover, it was found that these cations have negative formation energies at specific Ca sites especially in β-TCP, indicating the stabilization of the β phase., (Copyright © 2015 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.)

Hydroxyapatite (HAP) is an important bioceramic which constitutes the mineral components of bones and hard tissues in mammals. It is bioactive and used as bioceramic coatings for metallic implants and bone fillers. HAP readily absorbs a large amount of impurities. Knowledge on the elastic and mechanical properties of impurity-doped HAP is a subject of great importance to its potential for biomedical applications. Zn and Mg are the most common divalent cations HAP absorbs. Using density function theory based ab initio methods, we have carried out a large number of ab initio calculations to obtain the bulk elastic and mechanical properties of HAP with Zn or Mg doped in different concentration at the Ca1 and Ca2 sites using large 352-atom supercells. Detailed information on their dependece on the concetraion of the substitued impurity is obtained. Our results show that Mg enhances overall elastic and bulk mechanical properties whereas Zn tends to degrade except at low concentrations. At a higher concentration, the mechanical properties of Zn and Mg doped HAP also depend significantly on impurity distribution between the Ca1 and Ca2 sites. There is a strong evidence that Zn prefers Ca2 site for substituion whereas Mg has no such preference. These results imply that proper control of dopant concentration and their site preference must carefully considered in using doped HAP for specific biomedical applications., (Copyright © 2015 Elsevier Ltd. All rights reserved.)

First-principles calculations were performed for CO3(2-) ions in hydroxyapatite in order to investigate the atomic structures and thermodynamic stability of CO3(2-) and its related defects. Two different chemical equilibrium conditions in high-temperature and aqueous-solution environments were considered, and atomic and ionic chemical potentials for the individual chemical equilibrium conditions were evaluated to calculate defect formation energies. It was found that A-type CO3(2-) (substituting OH(-)) is energetically more favorable than B-type CO3(2-) (substituting PO4(3-)) in the high-temperature environment, whereas B-type is preferred to A-type in the aqueous solution environment. This result successfully reproduces experimentally observed trends. In the formation of A-type and B-type CO3(2-), OH(-) vacancies or protons (interstitial or substitutional) act as charge-compensating defects., (Copyright © 2014 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.)

Noble metal nanoparticles (e.g., gold and platinum) supported on TiO2 surfaces are utilized in many technological applications such as heterogeneous catalysts. To fully understand their enhanced catalytic activity, it is essential to unravel the interfacial interaction between the metal atoms and TiO2 surfaces at the level of atomic dimensions. However, it has been extremely difficult to directly characterize the atomic-scale structures that result when individual metal atoms are adsorbed on the TiO2 surfaces. Here, we show direct atomic-resolution images of individual Pt atoms adsorbed on TiO2 (110) surfaces using aberration-corrected scanning transmission electron microscopy. Subangstrom spatial resolution enables us to identify five different Pt atom adsorption sites on the TiO2 (110) surface. Combining this with systematic density functional theory calculations reveals that the most favorable Pt adsorption sites are on vacancy sites of basal oxygen atoms that are located in subsurface positions relative to the top surface bridging oxygen atoms.

A dislocation in a crystalline material has dangling bonds at its core and a strong strain field in its vicinity. Consequently, the dislocation attracts solute atoms and forms a so-called Cottrell atmosphere along the dislocation. A crystalline dislocation can be used as a template to produce nanowires by selectively doping foreign atoms along the dislocation. However, control of the configuration, spacing, and density of the formed periodic nanowire array has heretofore been extremely difficult. Here we show a method for fabricating ordered, electrically conductive nanowire arrays using periodic dislocations at crystal interfaces. As a demonstration, we fabricated arrays of titanium nanowires arranged at intervals of either 13 or 90 nm and then confirmed by scanning probe microscopy that they exhibit electrical conductivity inside an insulating aluminum oxide. Significantly, we were able to precisely control nanowire periodicity by the choice of crystal orientation and/or crystal planes at the crystal interface. This simple method for the fabrication of periodic nanowire arrays of highly controlled density should be widely applicable to electrical, magnetic, and optical devices.

Zeolites have potential application as ion-exchangers, catalysts and molecular sieves. Zeolites are once again drawing attention in Japan as stable adsorbents and solidification materials of fission products, such as (137)Cs(+) from damaged nuclear-power plants. Although there is a long history of scientific studies on the crystal structures and ion-exchange properties of zeolites for practical application, there are still open questions, at the atomic-level, on the physical and chemical origins of selective ion-exchange abilities of different cations and detailed atomic structures of exchanged cations inside the nanoscale cavities of zeolites. Here, the precise locations of Cs(+) ions captured within A-type zeolite were analyzed using high-resolution electron microscopy. Together with theoretical calculations, the stable positions of absorbed Cs(+) ions in the nanocavities are identified, and the bonding environment within the zeolitic framework is revealed to be a key factor that influences the locations of absorbed cations.

Theoretical calculations of electron energy loss near edge structures (ELNES) of lattice imperfections, particularly a Ni(111)/ZrO₂(111) heterointerface and an Al₂O₃ stacking fault on the {1100} plane, are performed using a first principles pseudopotential method. The present calculation can qualitatively reproduce spectral features as well as chemical shifts in experiment by employing a special pseudopotential designed for the excited atom with a core-hole. From the calculation, spectral changes observed in O-K ELNES from a Ni/ZrO₂ interface can be attributable to interfacial oxygen-Ni interactions. In the O-K ELNES of Al₂O₃ stacking faults, theoretical calculation suggests that the spectral feature reflects coordination environment and chemical bonding. Powerful combinations of ELNES with a pseudopotential method used to investigate the atomic and electronic structures of lattice imperfections are demonstrated., (Copyright © 2011 Elsevier Ltd. All rights reserved.)

Defect formation energies in materials generally depend on chemical potentials determined by a chemical equilibrium condition. In particular, an aqueous solution environment is important for biomaterials such as hydroxyapatite studied here. Therefore, a methodology to obtain ionic chemical potentials under chemical equilibrium between solid and aqueous solution was introduced, and was applied to substitutional divalent cations formed via ion exchange with Ca(2+) in hydroxyapatite. The calculated ranking of the stability of substitutional cations in HAp was in good agreement with the experimentally observed trend. The present theoretical approach would be useful to explore the thermodynamic stability of defects in materials subjected to an aqueous solution environment.

The local environment of substitutional Zn(2+) in Ca-deficient hydroxyapatite (HAp) was investigated using experimental and theoretical analyses of the x-ray absorption near edge structure (XANES). For Zn-K XANES calculations, two situations of Zn(2+) were considered. One was Zn(2+) substituted for Ca sites in perfect HAp, and the other was a Ca-deficient HAp model of substitutional Zn(2+) associated with a Ca(2+) vacancy charge compensated by two protons. The model of Zn(2+) in perfect HAp did not reproduce the experimental Zn-K XANES spectrum. In contrast, the Ca-deficient HAp model agreed well with the experimental spectrum. This indicates that substitutional Zn(2+) in Ca-deficient HAp is associated with the Ca(2+) vacancy complex in HAp.

The atomic level mechanism of incorporation of Zn(2+) into hydroxyapatite (HAp), which is a potential dopant to promote bone formation, was investigated, based on first principles total energy calculations and experimental X-ray absorption near edge structure (XANES) analyses. It was found that Zn(2+)-doped HAp tends to have a Ca-deficient chemical composition and substitutional Zn(2+) ions are associated with a defect complex with a Ca(2+) vacancy and two charge compensating protons. Moreover, first principles calculations demonstrated that Zn(2+) incorporation into HAp can take place by occupying the Ca(2+) vacancy of the defect complex. The Ca(2+) vacancy complex is not only the origin of the calcium deficiency in HAp, but also plays a key role in the uptake of trace elements during mineralization., (Copyright 2009 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.)

First-principles calculations are performed to investigate atomic and electronic structures of Sr(2+) ions substituting for Ca(2+) in octacalcium phosphate (OCP). The defect formation energies are evaluated from total energies of supercells and ionic chemical potentials of Sr(2+) and Ca(2+) determined under the chemical equilibrium with aqueous solution saturated with hydroxyapatite (HAp). The defect formation energy depends on the solution pH and the substitutional Ca sites in OCP, and the estimated equilibrium concentrations of Sr(2+) in OCP and HAp are in reasonable agreement with previous experimental results obtained in physiological conditions. It is also found that Sr(2+) ions can be more favorably substituted in OCP than in HAp. It is thought, therefore, that Sr(2+) plays its role to promote bone formation by being incorporated into the metastable OCP phase occurring during HAp nucleation.

First-principles calculations are performed for Mg(2+) and Zn(2+) substitution in hydroxyapatite (HAp) and octacalcium phosphate (OCP), because the foreign ions are known to play an important role for bone formation. In order to study their possible location in the system of HAp in contact with the aqueous solution, OCP is considered as a structural model of the transition region between HAp and the solution. It is found that, when the foreign ions substitute for Ca sites, the surrounding oxygen ions undergo considerable inward relaxation, due to their smaller ionic sizes than Ca(2+), which results in the smaller coordination numbers with oxygen as compared with those of Ca in bulk HAp and OCP. From the calculated defect formation energies, it is likely that the substitutional foreign ions are quite difficult to dissolve into HAp whereas can be more easily incorporated in OCP. In particular, Zn(2+) can more favorably substitute for the specific Ca site of OCP, as compared to Mg(2+), which is attributed with covalent bond formation between Zn and the surrounding oxygen ions. It is thus considered that zinc may play its role to promote bone formation by being incorporated into the transition region between HAp and the surrounding solution.

The incidence direction dependence, the individual site character dependence, and the atomic projection dependence of O-K near edge fine structure of the EEL spectrum (ELNES) from YBa2Cu3O7 (YBCO) and SrTiO3 were theoretically simulated using the first-principles band structure calculation. In order to calculate ELNES, a core-hole was introduced at the oxygen 1s orbital, and sufficiently large supercells composed of more than 100 atoms were employed. We found that the intensity of the first peak of O-K ELNES from YBCO strongly depends on the atomic projection direction, and disappears when the spectrum is measured with the other projection directions. The large projection dependence was also predicted in the O-K ELNES of SrTiO3. It was found that those spectral changes according to the position of the projection are caused by the unidirectional Ti-O-Ti bond in SrTiO3.

Inter- and/or transgranular crack paths in sintered silicon nitride (Si3N4) during fracture were investigated by in situ straining experiments in a transmission electron microscope at room temperature, using a high-precision micro-indenter. By this technique, cracks introduced in an in situ manner were observed to propagate in the grain interior and along grain boundaries. High-resolution electron microscopy (HREM) observation revealed that the crack propagation takes place at an interface between Si3N4 grains and an intergranular glassy film (IGF) in the case of intergranular fractures. According to the results by previous molecular dynamics simulations, a number of dangling bonds are present at the Si3N4/IGF interface, which should result in the observed fracture behavior at the interface. On the other hand, the crack path introduced during transgranular fracture of Si3N4 grains was found to be sharp and straight. The observed crack propagated towards [1120] inside the Si3N4 grain with the crack surface parallel to the (1100) plane. The HREM observations of crack walls revealed them to be atomically flat. The atomic termination of the crack walls was identified in combination with image simulations based on atomic models of the cleaved crack walls.

Low-dimensional structures, such as microclusters, quantum dots and one- or two-dimensional (1D or 2D) quantum wires, are of scientific and technological interest due to their unusual physical properties, which are quite different from those in the bulk. Here we present a successful method for fabricating conducting nanowire bundles inside an insulating ceramic single crystal by using unidirectional dislocations. A high density of dislocations (10(9) cm(-2)) was introduced by activating a primary slip system in sapphire (alpha-Al2O3 single crystal) using a two-stage deformation technique. Plate specimens cut out from the deformed sapphire were then annealed to straighten the dislocations. Finally, the plates on which metallic Ti was evaporated were heat-treated to diffuse Ti atoms inside sapphire. As a result of this process, Ti atoms segregated along the unidirectional dislocations within about 5 nm diameter, forming unidirectional Ti-enriched nanowires, which exhibit excellent electrical conductivity. This simple technique could potentially to be applied to any crystal, and may give special properties to commonly used materials.