1. Genomic characterization of carbapenemase-producing Klebsiella pneumoniae ST307 revealed multiple introductions in Buenos Aires, Argentina.
- Author
-
González-Espinosa F, Di Pilato V, Magariños F, Di Conza J, Rossolini GM, Gutkind G, Radice M, and Cejas D
- Subjects
- Argentina, Humans, Drug Resistance, Multiple, Bacterial genetics, Genome, Bacterial, Azabicyclo Compounds pharmacology, Drug Combinations, Genomics, Whole Genome Sequencing, Klebsiella pneumoniae genetics, Klebsiella pneumoniae drug effects, Klebsiella pneumoniae isolation & purification, Klebsiella pneumoniae enzymology, Klebsiella pneumoniae classification, beta-Lactamases genetics, Bacterial Proteins genetics, Klebsiella Infections microbiology, Phylogeny, Microbial Sensitivity Tests, Anti-Bacterial Agents pharmacology, Ceftazidime pharmacology
- Abstract
Objectives: To describe at genomic level nine carbapenemase-producing Klebsiella pneumoniae ST307 (Kp-ST307) clinical isolates recovered in Buenos Aires during 2017 to 2021, investigating their resistome, virulome, and phylogeny., Methods: Antimicrobial susceptibility was determined according to Clinical and Laboratory Standards Intitute (CLSI). Genomic DNA was sequenced by Illumina MiSeq and analysed using SPAdes, PROKKA, and Kleborate. Phylogeny of 355 randomly selected Kp-ST307 genomes and those from nine local isolates was inferred by a maximum-likelihood approach. The tree was visualized using Microreact., Results: Besides resistance to ß-lactams and fluoroquinolones, six out of nine Kp-ST307 were also resistant to ceftazidime/avibactam (CZA). This difficult-to-treat resvistance phenotype was mediated by bla
SHV-28 and GyrA-83I/ParC-80I mutations in addition to carbapenemase coding genes. Among CZA susceptible isolates, two of them harboured blaKPC-3 while the other harboured blaKPC-2 +blaCTX-M-15. Regarding CZA-resistant isolates, three harboured blaKPC-3 +blaNDM-1 +blaCMY-6 , two carried blaKPC-2 +blaNDM-5 +blaCTX-M-15 , and blaNDM-5 +blaCTX-M-15 were detected in the remaining isolate. Furthermore, five colistin-resistant isolates presented a nonsense mutation in mgrB. Global Kp-ST307 isolates were distributed in two deep-branching lineages while local isolates were set in the main clade of the phylogenetic tree. The five isolates from the same hospital, harbouring blaKPC-3 or blaKPC-3 +blaNDM-1 +blaCMY-6 , clustered in a monophyletic subclade with Italian isolates. Also, an isolate harbouring blaKPC-2 +blaNDM-5 +blaCTX-M-15 recovered in another hospital was closed to this group. The remaining local Kp-ST307 were grouped in other subclades containing isolates of diverse geographical origin., Conclusion: The inferred resistome was consistent with the resistant phenotype. Phylogeny suggested multiple introduction events in our region and a single major introduction in one hospital followed by local spread., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF