6 results on '"Low signal-to-noise ratio"'
Search Results
2. Time-Dependent Image Restoration of Low-SNR Live-Cell Ca 2 Fluorescence Microscopy Data.
- Author
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Woelk LM, Kannabiran SA, Brock VJ, Gee CE, Lohr C, Guse AH, Diercks BP, and Werner R
- Subjects
- Humans, Jurkat Cells, Microscopy, Fluorescence, Signal-To-Noise Ratio, Algorithms, Calcium metabolism, Calcium Signaling, Image Processing, Computer-Assisted, Models, Theoretical
- Abstract
Live-cell Ca2+ fluorescence microscopy is a cornerstone of cellular signaling analysis and imaging. The demand for high spatial and temporal imaging resolution is, however, intrinsically linked to a low signal-to-noise ratio (SNR) of the acquired spatio-temporal image data, which impedes on the subsequent image analysis. Advanced deconvolution and image restoration algorithms can partly mitigate the corresponding problems but are usually defined only for static images. Frame-by-frame application to spatio-temporal image data neglects inter-frame contextual relationships and temporal consistency of the imaged biological processes. Here, we propose a variational approach to time-dependent image restoration built on entropy-based regularization specifically suited to process low- and lowest-SNR fluorescence microscopy data. The advantage of the presented approach is demonstrated by means of four datasets: synthetic data for in-depth evaluation of the algorithm behavior; two datasets acquired for analysis of initial Ca2+ microdomains in T-cells; finally, to illustrate the transferability of the methodical concept to different applications, one dataset depicting spontaneous Ca2+ signaling in jGCaMP7b-expressing astrocytes. To foster re-use and reproducibility, the source code is made publicly available.
- Published
- 2021
- Full Text
- View/download PDF
3. Morphological active contour without edge-based model for real-time and non-rigid uterine fibroid tracking in HIFU treatment.
- Author
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Ning G, Zhang X, and Liao H
- Abstract
High-intensity focused ultrasound (HIFU) therapy represents an image-guided and non-invasive surgical approach to treat uterine fibroid. During the HIFU operation, it is challenging to obtain the real-time and accurate lesion contour automatically in ultrasound (US) video. The current intraoperative image processing is completed manually or semi-automatic. In this Letter, the authors propose a morphological active contour without an edge-based model to obtain accurate real-time and non-rigid US lesion contour. Firstly, a targeted image pre-processing procedure is applied to reduce the influence of inadequate image quality. Then, an improved morphological contour detection method with a customised morphological kernel is harnessed to solve the low signal-to-noise ratio of HIFU US images and obtain an accurate non-rigid lesion contour. A more reasonable lesion tracking procedure is proposed to improve tracking accuracy especially in the case of large displacement and incomplete lesion area. The entire framework is accelerated by the GPU to achieve a high frame rate. Finally, a non-rigid, real-time and accurate lesion contouring for intraoperative US video is provided to the doctor. The proposed procedure could reach a speed of more than 30 frames per second in general computer and a Dice similarity coefficient of 90.67% and Intersection over Union of 90.14%.
- Published
- 2019
- Full Text
- View/download PDF
4. Simultaneous transmission and reception on all elements of an array: binary code excitation.
- Author
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Isla JA and Cegla FB
- Abstract
Pulse-echo arrays are used in radar, sonar, seismic, medical and non-destructive evaluation. There is a trend to produce arrays with an ever-increasing number of elements. This trend presents two major challenges: (i) often the size of the elements is reduced resulting in a lower signal-to-noise ratio (SNR) and (ii) the time required to record all of the signals that correspond to every transmit-receive path increases. Coded sequences with good autocorrelation properties can increase the SNR while orthogonal sets can be used to simultaneously acquire all of the signals that correspond to every transmit-receive path. However, a central problem of conventional coded sequences is that they cannot achieve good autocorrelation and orthogonality properties simultaneously due to their length being limited by the location of the closest reflectors. In this paper, a solution to this problem is presented by using coded sequences that have receive intervals. The proposed approach can be more than one order of magnitude faster than conventional methods. In addition, binary excitation and quantization can be employed, which reduces the data throughput by roughly an order of magnitude and allows for higher sampling rates. While this concept is generally applicable to any field, a 16-element system was built to experimentally demonstrate this principle for the first time using a conventional medical ultrasound probe., Competing Interests: The authors have applied for patent protection (PCT/GB2016/051852) for the use of coded excitation containing random reception intervals.
- Published
- 2019
- Full Text
- View/download PDF
5. DOA Estimation of Unknown Emitter Signal Based on Time Reversal and Coprime Array.
- Author
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Li B, Liu S, Zhao D, and Hu BJ
- Abstract
In this paper, a novel direction-of-arrival (DOA) estimation for unknown (anonymous) emitter signal (ES) based on time reversal (TR) and coprime array (CA) is proposed. The resolution and accuracy of DOA estimation are enhanced from two aspects: one is from the view of array arrangement: the new distribution of CA is designed to reduce the holes, increase the degree of freedom (DOF) and apertures by rotating and translating only one subarray, which simplifies the operation. The other one is from the view of the algorithm: a neoteric DOA estimation algorithm with noise suppression based on TR, Capon and adaptive neuro-fuzzy inference system (ANFIS) is proposed for solving the wide sidelobe, multipath effect, low resolution and accuracy produced by conventional algorithms, in particular, those cannot work effectively under the existed hole condition. Furthermore, the resubmitting distorted noise and channel noise are suppressed effectively, which is not taken into considered in the conventional Capon algorithm. Simulation results including the resolution, accuracy, root mean square error (RMSE), Cramér-Rao lower bound (CRLB) and the compared analyses on uniform linear array (ULA), nested array (NA) and minimum redundancy array(MRA) demonstrate the performance advantages of the proposed DOA estimation algorithm even at very low signal-to-noise ratio (SNR) condition.
- Published
- 2019
- Full Text
- View/download PDF
6. Endoscopic image enhancement with noise suppression.
- Author
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Xia W, Chen ECS, and Peters T
- Abstract
Stereoscopic endoscopes have been used increasingly in minimally invasive surgery to visualise the organ surface and manipulate various surgical tools. However, insufficient and irregular light sources become major challenges for endoscopic surgery. Not only do these conditions hinder image processing algorithms, sometimes surgical tools are barely visible when operating within low-light regions. In addition, low-light regions have low signal-to-noise ratio and metrication artefacts due to quantisation errors. As a result, present image enhancement methods usually suffer from heavy noise amplification in low-light regions. In this Letter, the authors propose an effective method for endoscopic image enhancement by identifying different illumination regions and designing the enhancement design criteria for desired image quality. Compared with existing image enhancement methods, the proposed method is able to enhance the low-light region while preventing noise amplification during image enhancement process. The proposed method is tested with 200 images acquired by endoscopic surgeries. Computed results show that the proposed algorithm can outperform state-of-the-art algorithms for image enhancement, in terms of naturalness image quality evaluator and illumination index.
- Published
- 2018
- Full Text
- View/download PDF
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