1. Leveraging trait and QTL covariates to improve genomic prediction of resistance to Fusarium head blight in Central European winter wheat.
- Author
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Morales L, Akdemir D, Girard AL, Neumayer A, Reddy Nannuru VK, Shahinnia F, Stadlmeier M, Hartl L, Holzapfel J, Isidro-Sánchez J, Kempf H, Lillemo M, Löschenberger F, Michel S, and Buerstmayr H
- Abstract
Fusarium head blight (FHB) is a devastating disease of wheat, causing yield losses, reduced grain quality, and mycotoxin contamination. Breeding can mitigate the severity of FHB epidemics, especially with genomics-assisted methods. The mechanisms underlying resistance to FHB in wheat have been extensively studied, including phenological traits and genome-wide markers associated with FHB severity. Here, we aimed to improve genomic prediction for FHB resistance across breeding programs by incorporating FHB-correlated traits and FHB-associated loci as model covariates. We combined phenotypic data on FHB severity, anthesis date, and plant height with genome-wide marker data from five Central European winter wheat breeding programs for genome-wide association studies (GWAS) and genomic prediction. Within all populations, FHB was correlated with anthesis date and/or plant height, and a marker linked to the semi-dwarfing locus Rht-D1 was detected with GWAS for FHB. Including the Rht-D1 marker, anthesis date, and/or plant height as covariates in genomic prediction modeling improved prediction accuracy not only within populations but also in cross-population scenarios., Competing Interests: Authors JH and HK were employed by the company Secobra Saatzucht GmbH. Authors FL, AN, and MS were employed by the company Saatzucht Donau GmbH & CoKG. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Morales, Akdemir, Girard, Neumayer, Reddy Nannuru, Shahinnia, Stadlmeier, Hartl, Holzapfel, Isidro-Sánchez, Kempf, Lillemo, Löschenberger, Michel and Buerstmayr.)
- Published
- 2024
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