1. The methylomic landscape of human articular cartilage development contains epigenetic signatures of osteoarthritis risk.
- Author
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McDonnell E, Orr SE, Barter MJ, Rux D, Brumwell A, Wrobel N, Murphy L, Overman LM, Sorial AK, Young DA, Soul J, and Rice SJ
- Subjects
- Humans, CpG Islands genetics, Female, Male, Genetic Predisposition to Disease, Epigenome, Aged, Risk Factors, Middle Aged, Osteoarthritis genetics, Osteoarthritis pathology, Cartilage, Articular metabolism, Cartilage, Articular pathology, DNA Methylation, Epigenesis, Genetic, Quantitative Trait Loci, Chondrocytes metabolism, Chondrocytes pathology
- Abstract
Increasing evidence is emerging to link age-associated complex musculoskeletal diseases, including osteoarthritis (OA), to developmental factors. Multiple studies have shown a functional role for DNA methylation in the genetic mechanisms of OA risk using articular cartilage samples taken from aged individuals, yet knowledge of temporal changes to the methylome during human cartilage development is limited. We quantified DNA methylation at ∼700,000 individual CpGs across the epigenome of developing human chondrocytes in 72 samples ranging from 7 to 21 post-conception weeks. We identified significant changes in 3% of all CpGs and >8,200 developmental differentially methylated regions. We further identified 24 loci at which OA genetic variants colocalize with methylation quantitative trait loci. Through integrating developmental and mature human chondrocyte datasets, we find evidence for functional effects exerted solely in development or throughout the life course. This will have profound impacts on future approaches to translating genetic pathways for therapeutic intervention., Competing Interests: Declaration of interests L.M. has received speaker and consultancy fees from Illumina., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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