1. Basis of gene-specific transcription regulation by the Integrator complex.
- Author
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Sabath K, Nabih A, Arnold C, Moussa R, Domjan D, Zaugg JB, and Jonas S
- Subjects
- Humans, Binding Sites, Protein Binding, HEK293 Cells, Cilia metabolism, Cilia genetics, RNA Polymerase II metabolism, RNA Polymerase II genetics, Promoter Regions, Genetic, Gene Expression Regulation, Transcription Factors metabolism, Transcription Factors genetics, Transcription, Genetic
- Abstract
The Integrator complex attenuates gene expression via the premature termination of RNA polymerase II (RNAP2) at promoter-proximal pausing sites. It is required for stimulus response, cell differentiation, and neurodevelopment, but how gene-specific and adaptive regulation by Integrator is achieved remains unclear. Here, we identify two sites on human Integrator subunits 13/14 that serve as binding hubs for sequence-specific transcription factors (TFs) and other transcription effector complexes. When Integrator is attached to paused RNAP2, these hubs are positioned upstream of the transcription bubble, consistent with simultaneous TF-promoter tethering. The TFs co-localize with Integrator genome-wide, increase Integrator abundance on target genes, and co-regulate responsive transcriptional programs. For instance, sensory cilia formation induced by glucose starvation depends on Integrator-TF contacts. Our data suggest TF-mediated promoter recruitment of Integrator as a widespread mechanism for targeted transcription regulation., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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