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Monitoring the changes of ecosystem functioning is pivotal for understanding the global carbon cycle. Despite its size and contribution to the global carbon cycle, Africa is largely understudied in regard to ongoing changes of its ecosystem functioning and their responses to climate change. One of the reasons is the lack of long-term in situ data. Here, we use eddy covariance to quantify the net ecosystem exchange (NEE) and its components-gross primary production (GPP) and ecosystem respiration (R eco ) for years 2010-2022 for a Sahelian semiarid savanna to study trends in the fluxes. Significant negative trends were found for NEE (12.7 ± 2.8 g C m 2  year -1 ), GPP (39.6 ± 7.9 g C m 2  year -1 ), and R eco (32.2 ± 8.9 g C m 2  year -1 ). We found that NEE decreased by 60% over the study period, and this decrease was mainly caused by stronger negative trends in rainy season GPP than in R eco . Additionally, we observed strong increasing trends in vapor pressure deficit, but no trends in rainfall or soil water content. Thus, a proposed explanation for the decrease in carbon sink strength is increasing atmospheric dryness. The warming climate in the Sahel, coupled with increasing evaporative demand, may thus lead to decreased GPP levels across this biome, and lowering its CO 2 sequestration., (© 2024 The Author(s). Global Change Biology published by John Wiley & Sons Ltd.)

Increasing tree diversity is considered a key management option to adapt forests to climate change. However, the effect of species diversity on a forest's ability to cope with extreme drought remains elusive. In this study, we assessed drought tolerance (xylem vulnerability to cavitation) and water stress (water potential), and combined them into a metric of drought-mortality risk (hydraulic safety margin) during extreme 2021 or 2022 summer droughts in five European tree diversity experiments encompassing different biomes. Overall, we found that drought-mortality risk was primarily driven by species identity (56.7% of the total variability), while tree diversity had a much lower effect (8% of the total variability). This result remained valid at the local scale (i.e within experiment) and across the studied European biomes. Tree diversity effect on drought-mortality risk was mediated by changes in water stress intensity, not by changes in xylem vulnerability to cavitation. Significant diversity effects were observed in all experiments, but those effects often varied from positive to negative across mixtures for a given species. Indeed, we found that the composition of the mixtures (i.e., the identities of the species mixed), but not the species richness of the mixture per se, is a driver of tree drought-mortality risk. This calls for a better understanding of the underlying mechanisms before tree diversity can be considered an operational adaption tool to extreme drought. Forest diversification should be considered jointly with management strategies focussed on favouring drought-tolerant species., (© 2024 John Wiley & Sons Ltd.)

Species mixture is promoted as a crucial management option to adapt forests to climate change. However, there is little consensus on how tree diversity affects tree water stress, and the underlying mechanisms remain elusive. By using a greenhouse experiment and a soil-plant-atmosphere hydraulic model, we explored whether and why mixing the isohydric Aleppo pine (Pinus halepensis, drought avoidant) and the anisohydric holm oak (Quercus ilex, drought tolerant) affects tree water stress during extreme drought. Our experiment showed that the intimate mixture strongly alleviated Q. ilex water stress while it marginally impacted P. halepensis water stress. Three mechanistic explanations for this pattern are supported by our modeling analysis. First, the difference in stomatal regulation between species allowed Q. ilex trees to benefit from additional soil water in mixture, thereby maintaining higher water potentials and sustaining gas exchange. By contrast, P. halepensis exhibited earlier water stress and stomatal regulation. Second, P. halepensis trees showed stable water potential during drought, although soil water potential strongly decreased, even when grown in a mixture. Model simulations suggested that hydraulic isolation of the root from the soil associated with decreased leaf cuticular conductance was a plausible explanation for this pattern. Third, the higher predawn water potentials for a given soil water potential observed for Q. ilex in mixture can-according to model simulations-be explained by increased soil-to-root conductance, resulting from higher fine root length. This study brings insights into the mechanisms involved in improved drought resistance of mixed species forests., Competing Interests: Conflict of interest statement. None declared., (© The Author(s) 2024. Published by Oxford University Press on behalf of American Society of Plant Biologists.)

Protists, a crucial part of the soil food web, are increasingly acknowledged as significant influencers of nutrient cycling and plant performance in farmlands. While topographical and climatic factors are often considered to drive microbial communities on a continental scale, higher trophic levels like heterotrophic protists also rely on their food sources. In this context, bacterivores have received more attention than fungivores. Our study explored the connection between the community composition of protists (specifically Rhizaria and Cercozoa) and fungi across 156 cereal fields in Europe, spanning a latitudinal gradient of 3000 km. We employed a machine-learning approach to measure the significance of fungal communities in comparison to bacterial communities, soil abiotic factors, and climate as determinants of the Cercozoa community composition. Our findings indicate that climatic variables and fungal communities are the primary drivers of cercozoan communities, accounting for 70% of their community composition. Structural equation modelling (SEM) unveiled indirect climatic effects on the cercozoan communities through a change in the composition of the fungal communities. Our data also imply that fungivory might be more prevalent among protists than generally believed. This study uncovers a hidden facet of the soil food web, suggesting that the benefits of microbial diversity could be more effectively integrated into sustainable agriculture practices., (© 2024 The Author(s). Environmental Microbiology published by John Wiley & Sons Ltd.)

The introduction of Reduced height (Rht) dwarfing genes into elite wheat varieties has contributed to enhanced yield gain in high input agrosystems by preventing lodging. Yet, how modern selection for dwarfing has affected symbiosis remains poorly documented. In this study, we evaluated the response of both the plant and the arbuscular mycorrhizal fungus to plant genetic variation at a major Quantitative Trait Locus called QTL 4B2, known to harbor a Rht dwarfing gene, when forming the symbiosis. We used twelve inbred genotypes derived from a diversity base broadened durum wheat Evolutionary Pre-breeding Population and genotyped with a high-throughput Single Nucleotide Polymorphism (SNP) genotyping array. In a microcosm setup segregating roots and the extra-radical mycelium, each wheat genotype was grown with or without the presence of Rhizophagus irregularis. To characterize arbuscular mycorrhizal symbiosis, we assessed hyphal density, root colonization, spore production, and plant biomass. Additionally, we split the variation of these variables due either to genotypes or to the Rht dwarfing genes alone. The fungus exhibited greater development in the roots of Dwarf plants compared to non-Dwarf plants, showing increases of 27%, 37% and 51% in root colonization, arbuscules, and vesicles, respectively. In addition, the biomass of the extra-radical fungal structures increased by around 31% in Dwarf plants. The biomass of plant roots decreased by about 43% in mycorrhizal Dwarf plants. Interestingly, extraradical hyphal production was found to be partly genetically determined with no significant effect of Rht, as for plant biomasses. In contrast, variations in root colonization, arbuscules and extraradical spore production were explained by Rht dwarfing genes. Finally, when mycorrhizal, Dwarf plants had significantly lower total P content, pointing towards a less beneficial symbiosis for the plant and increased profit for the fungus. These results highlight the effect of Rht dwarfing genes on both root and fungal development. This calls for further research into the molecular mechanisms governing these effects, as well as changes in plant physiology, and their implications for fostering arbuscular mycorrhizal symbiosis in sustainable agrosystems., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)

The data set describes variables collected from a French (N 48.84°, E 1.95°) field trial, over a twelve-year period (2009-2020), in which four innovative cropping systems designed to reach multiple environmental and production goals were assessed. The four cropping systems were designed with new combinations of agricultural practices; they differed in terms of pesticide uses, nitrogen inputs, tillage practices, and crop sequences. Both biotic and abiotic variables were measured. In a previous data paper, we focused on nitrogen fluxes collected from two systems, over eight years (2009-2016). In the present one, we enlarge the scope of the variables, including more crop descriptions and environmental indicators, from all four systems, and over a longer period (2009-2020). The biotic data are: growth stages; aboveground plant nitrogen content and biomass collected at different growth stages, depending on the species; yield components of all the crops; and yield harvested with a combine machine. No weed, crop disease, and pest data are described. The abiotic data are physical and chemical properties of the soil (i.e. texture, calcium carbonate content, pH, organic carbon contents, and nitrogen contents) collected at different assessment periods. All agricultural practices, and climate were regularly recorded, and the treatment frequency indexes and the energy consumptions were computed. These data could be used for benchmarking, to design low-input systems, to improve models for parameterization and validation, and to increase the predictive accuracy of models of crop growth and development, specifically for orphan species such as linseed, faba bean or hemp, and for soil carbon and soil nitrogen fluxes in various conditions., (© 2024 The Authors. Published by Elsevier Inc.)

Soil calcium carbonate (CaCO 3 ) impacts plant mineral nutrition far beyond Fe metabolism, imposing constraints for crop growth and quality in calcareous agrosystems. Our knowledge on plant strategies to tolerate CaCO 3 effects mainly refers to Fe acquisition. This review provides an update on plant cellular and molecular mechanisms recently described to counteract the negative effects of CaCO 3 in soils, as well as recent efforts to identify genetic bases involved in CaCO 3 tolerance from natural populations, that could be exploited to breed CaCO 3 -tolerant crops. Finally, we review the impact of environmental factors (soil water content, air CO 2 , and temperature) affecting soil CaCO 3 equilibrium and plant tolerance to calcareous soils, and we propose strategies for improvement in the context of climate change., Competing Interests: Declaration of interests The authors have no interests to declare., (Copyright © 2024 Elsevier Ltd. All rights reserved.)

Tree monocultures constitute an increasing fraction of the global tree cover and are the dominant tree-growing strategy of forest landscape restoration commitments. Their advantages to produce timber are well known, but their value for biodiversity is highly controversial and context dependent. Therefore, understanding whether, and in which conditions, they can harbor native species regeneration is crucial. Here, we conducted meta-analyses based on a global survey of the literature and on a database created with local, unpublished studies throughout Brazil to evaluate the regeneration potential of native species under tree monocultures and the way management influences this regeneration. Native woody species regeneration under tree monocultures harbors a substantial fraction of the diversity (on average 40% and 68% in the global and Brazilian surveys, respectively) and abundance (on average 25% and 60% in the global and Brazilian surveys, respectively) of regeneration observed in natural forests. Plantations with longer rotation lengths, composed of native tree species, and located adjacent to forest remnants harbor more species. Pine plantations harbor more native individuals than eucalypt plantations, and the abundance of regenerating trees is higher in sites with higher mean temperatures. Species-area curves revealed that the number of woody species under pine and eucalypt plantations in Brazil is 606 and 598 species, respectively, over an aggregated sampled area of ca. 12 ha. We highlight that the understory of tree monocultures can harbor a considerable diversity of regenerating native species at the landscape and regional scales, but this diversity strongly depends on management. Long-rotation length and favorable location are key factors for woody regeneration success under tropical tree monocultures. Therefore, tree monocultures can play a role in forest landscape restoration and conservation, but only if they are planned and managed for achieving this purpose., (© 2024 John Wiley & Sons Ltd.)

Future climate models indicate an enhanced severity of regional drought and frequent rewetting events, which may cause cascading impacts on soil nitrogen cycle and nitrous oxide (N 2 O) emissions, but the underlying microbial mechanism remains largely unknown. Here we report an incubation study that examined the impacts of soil moisture status and nitrification inhibitor (DCD) on the N 2 O-producers and N 2 O-reducers following the application of urea and composted swine manure in an acid soil. The soil moisture treatments included 100 % water-holding capacity (WHC) (wetting, 35.3 % gravimetric soil water content), 40 % WHC (drought, 7 % gravimetric soil water content), and 40 % to 100 % WHC (rewetting). The results showed that N 2 O emissions were significantly decreased under drought conditions and were significantly increased after rewetting. The resistance of ammonia-oxidizing bacteria and nosZII, which was inhibited by urea or manure application, modulated N 2 O emissions under drought conditions. The resilience of the functional guilds modulated their dominant role in N 2 O emissions with rewetting. Ammonia-oxidizing bacteria, nirS-type denitrifying bacteria and nosZI showed significant resilience in response to rewetting. Significant negative relationships were observed between N 2 O emissions and nosZII clade under wetting condition and between N 2 O emissions and nosZI clade after rewetting. Our results highlighted the importance of microbial resistance and resilience in modulating N 2 O emissions, which help to better understand the dominant way of N 2 O emissions, and consequently make efficient mitigation strategies under the global climate change., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier B.V.)

Mixed-species forests are promoted as a forest management strategy for climate change adaptation, but whether they are more resistant to drought than monospecific forests remains contested. In particular, the trait-based mechanisms driving the role of tree diversity under drought remain elusive. Using tree cores from a large-scale biodiversity experiment, we investigated tree growth and physiological stress responses (i.e. increase in wood carbon isotopic ratio; δ 13 C) to changes in climate-induced water availability (wet to dry years) along gradients in neighbourhood tree species richness and drought-tolerance traits. We hypothesized that neighbourhood species richness increases growth and decreases δ 13 C and that these relationships are modulated by the abiotic (i.e. climatic conditions) and the biotic context. We characterised the biotic context using drought-tolerance traits of focal trees and their neighbours. These traits are related to cavitation resistance versus resource acquisition and stomatal control. Tree growth increased with neighbourhood species richness. However, we did not observe a universal relief of water stress in species-rich neighbourhoods. The effects of neighbourhood species richness and climate on growth and δ 13 C were modulated by the traits of focal trees and the traits of their neighbours. At either end of each drought-tolerance gradient, species responded in opposing directions during dry and wet years. We show that species' drought-tolerance traits can explain the strength and nature of biodiversity-ecosystem functioning relationships in experimental tree communities experiencing drought. Mixing tree species can increase growth but may not universally relieve drought stress., (© 2024 The Authors. Plant Biology published by John Wiley & Sons Ltd on behalf of German Society for Plant Sciences, Royal Botanical Society of the Netherlands.)

Soil erosion on agricultural land is a major threat for food and raw materials production. It has become a major concern in rubber (Hevea brasiliensis) plantations introduced on sloping ground. Alternative agroecological crop management practices must be investigated. One aim of our study was to assess the ability of logging residues (i.e., trunks, branches, leaves and stumps of a clearcut plantation) and of legume cover (Pueraria phaseoloides) to mitigate N, P and K losses through runoff and soil detachment in a young rubber plantation. The other aim was to investigate the relationships of these nutrient losses with soil structure and soil macrofauna diversity. Runoff and soil loss were monitored for 3 years using 1-m 2 plots under different practices as regards the management of logging residues and the use or not of a legume. The monitoring started when rubber trees were one-year-old. The planting row, where soil was bare, was the hotspot of soil erosion, with an average runoff of 832 mm y -1 and soil loss of 3.2 kg m -2 y -1 . Sowing a legume in the inter-row reduced runoff and soil loss by 88 % and 98 % respectively, compared to bare soil. Spreading logging residues as well as growing a legume cover almost eliminated runoff and soil detachment (19 mm y -1 and 4 g m -2 y -1 respectively). Nutrient losses were negligible as long as the soil surface was covered by a legume crop, with or without logging residues. Total N loss from soil detachment ranged from 0.02 to 0.2 g m -2 y -1 , for example. Spreading logging residues in the inter-rows significantly improved soil structure and soil macrofauna diversity compared to bare soil. Nutrient losses from runoff and soil detachment were negatively correlated with improved soil structure and soil macrofauna diversity. We recommend investigating alternative ways to manage planting rows., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)

Earthworms can stimulate microbial activity and hence greenhouse gas (GHG) emissions from soils. However, the extent of this effect in the presence of plants and soil moisture fluctuations, which are influenced by earthworm burrowing activity, remains uncertain. Here, we report the effects of earthworms (without, anecic, endogeic, both) and plants (with, without) on GHG (CO2, N2O) emissions in a 3-month greenhouse mesocosm experiment simulating a simplified agricultural context. The mesocosms allowed for water drainage at the bottom to account for the earthworm engineering effect on water flow during two drying-wetting cycles. N2O cumulative emissions were 34.6% and 44.8% lower when both earthworm species and only endogeic species were present, respectively, and 19.8% lower in the presence of plants. The presence of the endogeic species alone or in combination with the anecic species slightly reduced CO2 emissions by 5.9% and 11.4%, respectively, and the presence of plants increased emissions by 6%. Earthworms, plants and soil water content interactively affected weekly N2O emissions, an effect controlled by increased soil dryness due to drainage via earthworm burrows and mesocosm evapotranspiration. Soil macroporosity (measured by X-ray tomography) was affected by earthworm species-specific burrowing activity. Both GHG emissions decreased with topsoil macropore volume, presumably due to reduced moisture and microbial activity. N2O emissions decreased with macropore volume in the deepest layer, likely due to the presence of fewer anaerobic microsites. Our results indicate that, under experimental conditions allowing for plant and earthworm engineering effects on soil moisture, earthworms do not increase GHG emissions, and endogeic earthworms may even reduce N2O emissions., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Ganault et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)

Plant hydraulics is crucial for assessing the plants' capacity to extract and transport water from the soil up to their aerial organs. Along with their capacity to exchange water between plant compartments and regulate evaporation, hydraulic properties determine plant water relations, water status and susceptibility to pathogen attacks. Consequently, any variation in the hydraulic characteristics of plants is likely to significantly impact various mechanisms and processes related to plant growth, survival and production, as well as the risk of biotic attacks and forest fire behaviour. However, the integration of hydraulic traits into disciplines such as plant pathology, entomology, fire ecology or agriculture can be significantly improved. This review examines how plant hydraulics can provide new insights into our understanding of these processes, including modelling processes of vegetation dynamics, illuminating numerous perspectives for assessing the consequences of climate change on forest and agronomic systems, and addressing unanswered questions across multiple areas of knowledge., (© 2023 The Authors. New Phytologist © 2023 New Phytologist Foundation.)

The vast peat deposits in the Peruvian Amazon are crucial to the global climate. Palm swamp, the most extensive regional peatland ecosystem faces different threats, including deforestation and degradation due to felling of the dominant palm Mauritia flexuosa for fruit harvesting. While these activities convert this natural C sink into a source, the distribution of degradation and deforestation in this ecosystem and related C emissions remain unstudied. We used remote sensing data from Landsat, ALOS-PALSAR, and NASA's GEDI spaceborne LiDAR-derived products to map palm swamp degradation and deforestation within a 28 Mha area of the lowland Peruvian Amazon in 1990-2007 and 2007-2018. We combined this information with a regional peat map, C stock density data and peat emission factors to determine (1) peatland C stocks of peat-forming ecosystems (palm swamp, herbaceous swamp, pole forest), and (2) areas of palm swamp peatland degradation and deforestation and associated C emissions. In the 6.9 ± 0.1 Mha of predicted peat-forming ecosystems within the larger 28 Mha study area, 73% overlaid peat (5.1 ± 0.9 Mha) and stored 3.88 ± 0.12 Pg C. Degradation and deforestation in palm swamp peatlands totaled 535,423 ± 8,419 ha over 1990-2018, with a pronounced dominance for degradation (85%). The degradation rate increased 15% from 15,400 ha y -1 (1990-2007) to 17,650 ha y -1 (2007-2018) and the deforestation rate more than doubled from 1,900 ha y -1 to 4,200 ha y -1 . Over 1990-2018, emissions from degradation amounted to 26.3 ± 3.5 Tg C and emissions from deforestation were 12.9 ± 0.5 Tg C. The 2007-2018 emission rate from both biomass and peat loss of 1.9 Tg C yr -1 is four times the average biomass loss rate due to gross deforestation in 2010-2019 reported for the hydromorphic Peruvian Amazon. The magnitude of emissions calls for the country to account for deforestation and degradation of peatlands in national reporting., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)

Two-dimensional reactive transport models, one with a simplified root system and the other accounting for dynamically evolving root architecture, were constructed to examine the influence of model complexity on capturing the effect of soil-root dynamics relating to the Oxalate Carbonate Pathway (OCP) of the Iroko tree over 170 years. Oxidation of oxalate from fallen tree tissue by soil bacteria enables local soil pH increase, leading to the sequestration of atmospheric carbon in carbonate minerals (calcite) in the shallow soil surrounding the tree. Simulations of both root models corroborate previous one-dimensional models of the OCP focused on Ca and C mass balance, where high weathering rates of Ca-containing silicate minerals in bedrock, along with contributions from groundwater, provided sufficient Ca for precipitation of observed quantities of calcite. Both simulations demonstrate the development of a distinct high pH zone where oxalate is oxidized, Ca accumulates, and calcite precipitates (OCP zone); and a low pH zone where roots collect Ca, later returned to the top soil as calcium oxalate (Total Root Extent/TRE zone) via litterfall. While the extent of OCP zone development near the ground surface was very similar between simulations, differences in localized root water uptake between the two approaches resulted in variation in water and solute transport and influenced the geometry of the OCP zone at depth, with implications for calcite precipitation in the soil. Trends in CO 2 and O 2 partial pressures in the OCP zone were mirrored in the TRE zone, suggesting linkage between the two zones with regard to gas transport. Near the end of the tree's lifespan, results indicate that soil permeability decreases due to calcite precipitation may limit O 2 ingress and availability in the shallow soil, while trapping CO 2 released from the oxidation of organics in the shallow soil, with implications for the long-term sustainability of the OCP itself., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)

Grassland management practices vary in stocking rates and plant removal strategies (grazing versus mowing). They influence organic matter (OM) inputs, which were postulated as main controls of soil organic carbon (SOC) sequestration and might therefore control SOC stabilization. The aim of this study was to test this hypothesis by investigating the impacts of grassland harvesting regimes on parameters related to soil microbial functioning and soil organic matter (SOM) formation processes. We used a thirteen-year experiment in Central France under contrasting management (unmanaged, grazing with two intensities, mowing, bare fallow) to establish a carbon input gradient based on biomass leftovers after harvest. We investigated microbial biomass, basal respiration and enzyme activities as indicators of microbial functioning, and amino sugar content and composition as indicator of persistent SOM formation and origin through necromass accumulation. Responses of these parameters to carbon input along the gradient were contrasting and in most cases unrelated. Only the microbial C/N ratio and amino sugar contents showed a linear response indicating that they are influenced by plant-derived OM input. Other parameters were most probably more influenced by root activity, presence of herbivores, and/or physicochemical changes following management activities impacting soil microbial functioning. Grassland harvesting strategies influence SOC sequestration not only by changing carbon input quantity, but also through their effects on belowground processes possibly related to changing carbon input types and physiochemical soil properties., Competing Interests: Declaration of competing interest We state that there is no conflict of interests., (Copyright © 2023 Elsevier B.V. All rights reserved.)

Salinity is one of the most devastating abiotic stresses hampering the growth and production of rice. Nine indole-3-acetic acid (IAA)-producing salt-tolerant plant-growth-promoting rhizobacteria (ST-PGPR) were inoculated into Thai jasmine rice ( Oryza sativa L.) variety Khao Dawk Mali 105 (KDML105) seedlings grown under different concentrations of NaCl (0, 50, 100, and 150 mM). The ST-PGPR strains significantly promoted the growth parameters, chlorophyll content, nutrient uptake (N, P, K, Ca, and Mg), antioxidant activity, and proline accumulation in the seedlings under both normal and saline conditions compared to the respective controls. The K + /Na + ratio of the inoculated seedlings was much higher than that of the controls, indicating greater salt tolerance. The most salt-tolerant and IAA-producing strain, Sinomonas sp. ORF15-23, yielded the highest values for all the parameters, particularly at 50 mM NaCl. The percentage increases in these parameters relative to the controls ranged from >90% to 306%. Therefore, Sinomonas sp. ORF15-23 was considered a promising ST-PGPR to be developed as a bioinoculant for enhancing the growth, salt tolerance, and aroma of KDML105 rice in salt-affected areas. Environmentally friendly technologies such as ST-PGPR bioinoculants could also support the sustainability of KDML105 geographical indication (GI) products. However, the efficiency of Sinomonas sp. ORF15-23 should be evaluated under field conditions for its effect on rice nutrient uptake and growth, including the 2AP level.

Ferralsols correspond to the red and yellow soils that are common in the tropics. They are deeply weathered but physical fertility is high because they exhibit a strong microgranular structure whose origin is still actively debated. In the present study, we looked for evidence of the biological origin of the structure resulting from soil fauna activity. We present results recorded with Brazilian Ferralsols developed under native vegetation. It was found that the Ferralsols studied exhibit morphological features related to the activity of social insects. We showed the presence of potassium 2:1 clays originating from the saprolite in the microaggregates of all the Ferralsols studied. These 2:1 clays were earlier discussed as markers of long-term termite activity. This highlights the threat that weighs on the physical fertility of these soils, and more broadly on the water cycle in the tropical regions concerned, if intensive agriculture reduces the soil fauna biodiversity, as indicated by several studies., (© 2023. The Author(s).)

The present investigation determines the persistence of herbicides like butachlor and pretilachlor in Indian soil, and their impact on soil biological properties including microbial biomass carbon (MBC), total microbial population numbers, and enzyme activities. Butachlor was degraded faster in autumn rice soil (t 1/2 of 10-13 days) than in winter rice soil (half-life of 16-18 days). The t 1/2 of pretilachlor in winter rice was 12-16 days. Regardless of the seasons under cultivation, no pesticide residue was detected in rice at harvest. Herbicides induced an initial decline (0-14th days after application) in MBC (averages of 332.7-478.4 g g -1 dry soil in autumn rice and 299.6-444.3 g g -1 dry soil in winter rice), microbial populations (averages of 6.4 cfu g -1 in autumn rice and 4.6 cfu g -1 in winter rice), and phosphatase (averages of 242.6-269.3 μg p-nitrophenol g -1 dry soil h -1 in autumn rice and 188.2-212.2 μg p-nitrophenol g -1 dry soil h -1 in winter rice). The application of herbicides favored dehydrogenase (averages of 123.1-156.7 g TPF g -1 dry soil in autumn and 126.7-151.1 g TPF g -1 dry soil in winter) and urease activities (averages of 279.0-340.4 g NH 4 g -1 soil 2 h -1 in autumn and 226.7-296.5 g NH 4 g -1 soil 2 h -1 in winter) in rice soil at 0-14th DAA. The study suggests that applications of butachlor and pretilachlor at the rates of 1000 g ha -1 and 750 g ha -1 , respectively, to control the weeds in the transplanted rice fields do not have any negative impact on the harvested rice and associated soil environment., (© 2023. The Author(s), under exclusive licence to Springer Nature Switzerland AG.)

Background: The effects of the environment and genotype in the coffee bean chemical composition were studied using nine trials covering an altitudinal gradient [600-1100 m above sea level (a.s.l.)] with three genotypes of Coffea arabica in the northwest mountainous region of Vietnam. The impacts of the climatic conditions on bean physical characteristics and chemical composition were assessed., Results: We showed that the environment had a significant effect on the bean density and on all bean chemical compounds. The environment effect was stronger than the genotype and genotype-environment interaction effects for cafestol, kahweol, arachidic (C20:0), behenic acid (C22:0), 2,3-butanediol, 2-methyl-2-buten-1-ol, benzaldehyde, benzene ethanol, butyrolactone, decane, dodecane, ethanol, pentanoic acid, and phenylacetaldehyde bean content. A 2 °C increase in temperature had more influence on bean chemical compounds than a 100 mm increase in soil water content. Temperature was positively correlated with lipids and volatile compounds. With an innovative method using iterative moving averages, we showed that correlation of temperature, vapour pressure deficit (VPD) and rainfall with lipids and volatiles was higher between the 10th and 20th weeks after flowering highlighting this period as crucial for the synthesis of these chemicals. Genotype specific responses were evidenced and could be considered in future breeding programmes to maintain coffee beverage quality in the midst of climate change., Conclusion: This first study of the effect of the genotype-environment interactions on chemical compounds enhances our understanding of the sensitivity of coffee quality to genotype environment interactions during bean development. This work addresses the growing concern of the effect of climate change on speciality crops and more specifically coffee. © 2023 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry., (© 2023 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.)

Dry and warm conditions have exacerbated the occurrence of large and severe wildfires over the past decade in Canada's Northwest Territories (NT). Although temperatures are expected to increase during the 21st century, we lack understanding of how the climate-vegetation-fire nexus might respond. We used a dynamic global vegetation model to project annual burn rates, as well as tree species composition and biomass in the NT during the 21st century using the IPCC's climate scenarios. Burn rates will decrease in most of the NT by the mid-21st century, concomitant with biomass loss of fire-prone evergreen needleleaf tree species, and biomass increase of broadleaf tree species. The southeastern NT is projected to experience enhanced fire activity by the late 21st century according to scenario RCP4.5, supported by a higher production of flammable evergreen needleleaf biomass. The results underlie the potential for major impacts of climate change on the NT's terrestrial ecosystems., Competing Interests: The authors declare no competing interests., (© 2023 The Author(s).)

Background: Worldwide coffee production, especially Arabica coffee, is threatened by climatic change, plants diseases and vulnerability of smallholders. Meanwhile, consumers' demand for socially and environmentally sustainable products is steadily increasing, driving the engagement of stakeholders in agro-ecological and social initiatives. Here we present a new organizational model, the "Coffee agroforestry business-driven cluster" (CaFC), which aims at preserving ecosystems while offering producers a fair income. Based on an original local micro value-chain dedicated to sustainable production of high-quality Arabica coffee under agroforestry systems, the CaFC model stands out by addressing the issues around plantation renovation, a crucial process that requires considerable investments from producers. Methods: Based on a pilot project in Nicaragua, we illustrate how the operational principles of CaFC can be applied in a real setting. Using data shared by key stakeholders involved in the project, we assess the profitability of the CaFC model by comparing different scenarios and applying sensitivity analysis. We then reflect on the reproducibility of the model in other contexts, building on lessons learned from ongoing implementations in Vietnam and Cameroon. Results: For producers renovating their plantations, the CaFC model consistently outperforms other scenarios, offering high quality premiums coupled with capacity building, access to highly productive varieties that perform well under agroforestry systems and adapted credit with favourable repayment schemes. Implementation in Vietnam and Cameroon show that the model can be successfully replicated with some adaptation to local contexts. These cases also highlight the importance of mutual interests, trust and communication in enabling collaboration between stakeholders. Conclusions: The CaFC model has great potential for positive environmental and economic impact and offers strong incentives for stakeholders involved in its resulting micro value-chain. The concept was initially developed in Nicaragua for coffee but could also be adapted in other countries or even to other commodities such as cocoa., Competing Interests: No competing interests were disclosed., (Copyright: © 2023 Meter A et al.)

We hypothesized that the nitrogen-fixing tree Acacia mangium could improve the growth and nitrogen nutrition of non-fixing tree species such as Eucalyptus . We measured the N-mineralization and respiration rates of soils sampled from plots covered with Acacia , Eucalyptus or native vegetation at two tropical sites (Itatinga in Brazil and Kissoko in the Congo) in the laboratory. We used a bioassay to assess N bioavailability to eucalypt seedlings grown with and without chemical fertilization for at least 6 months. At each site, Eucalyptus seedling growth and N bioavailability followed the same trends as the N-mineralization rates in soil samples. However, despite lower soil N-mineralization rates under Acacia in the Congo than in Brazil, Eucalyptus seedling growth and N bioavailability were much greater in the Congo, indicating that bioassays in pots are more accurate than N-mineralization rates when predicting the growth of eucalypt seedlings. Hence, in the Congo, planting Acacia mangium could be an attractive option to maintain the growth and N bioavailability of the non-fixing species Eucalyptus while decreasing chemical fertilization. Plant bioassays could help determine if the introduction of N 2 -fixing trees will improve the growth and mineral nutrition of non-fixing tree species in tropical planted forests.

Agroforestry systems are an integral part of Sub-Saharan agricultural landscapes. Studies conducted at tree or plot scales on the supply of ecosystem services (ES) suggest that agroforestry practices are a promising way to build multifunctional agricultural landscapes. However, the current characterization and understanding of how multiple ES are associated across such heterogeneous agricultural landscapes are still limited. This study provides the first characterization of the multiple ESs supplied by a Sahelian Faidherbia albida agroforestry parkland and their relationships. Relying on field data for 11 ES indicators, recent advances in remote sensing-derived information, and blending different ES mapping approaches, we first assessed the spatial heterogeneity of the supply of each ES. We found that the majority of ES indicators remained below ES potential values over the study area by 25 % to 50 %, revealing that there is a considerable scope for increasing the ES supply in the F. albida parkland. Then, using a scoring approach, we analyzed the supply of multiple ESs. We observed a large number of hotspots and a clear effect of the proximity of F. albida trees fostering the supply of multiple ESs in their vicinity. Finally, we mapped and analyzed the dominant relationships - trade-offs, synergies or losses - between ESs from a cooccurrence spatial approach. We showed that significant trade-offs and losses (58 % of the area) between ESs can exist in the F. albida parkland. Interestingly, we also showed that synergies occurred mainly up to 10 m from the F. albida trees, suggesting that synergies need to be increased beyond this threshold. By adopting an original ES valuation framework, we provided basic insights into ESs and their relationships. The different maps and information generated can support public debates and target new policies fostering the multifunctionality of F. albida parklands as well as in various other parklands of West Africa., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Leroux Louise reports financial support was provided by European Union., (Copyright © 2022 Elsevier B.V. All rights reserved.)

Climate change is imposing drier atmospheric and edaphic conditions on temperate forests. Here, we investigated how deep soil (down to 300 cm) water extraction contributed to the provision of water in the Fontainebleau-Barbeau temperate oak forest over two years, including the 2018 record drought. Deep water provision was key to sustain canopy transpiration during drought, with layers below 150 cm contributing up to 60% of the transpired water in August 2018, despite their very low density of fine roots. We further showed that soil databases used to parameterize ecosystem models largely underestimated the amount of water extractable from the soil by trees, due to a considerable underestimation of the tree rooting depth. The consensus database established for France gave an estimate of 207 mm for the soil water holding capacity (SWHC) at Fontainebleau-Barbeau, when our estimate based on the analysis of soil water content measurements was 1.9 times as high, reaching 390 ± 17 mm. Running the CASTANEA forest model with the database-derived SWHC yielded a 185 gC m -2 y -1 average underestimation of annual gross primary productivity under current climate, reaching up to 687 ± 117 gC m -2 y -1 under climate change scenario RCP8.5. It is likely that the strong underestimation of SWHC that we show at our site is not a special case, and concerns a large number of forest sites. Thus, we argue for a generalisation of deep soil water content measurements in forests, in order to improve the estimation of SWHC and the simulation of the forest carbon cycle in the current context of climate change., Competing Interests: Declaration of competing interest The authors declare no conflict of interest., (Copyright © 2022 Elsevier B.V. All rights reserved.)

Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1-km 2 resolution for 0-5 and 5-15 cm soil depth. These maps were created by calculating the difference (i.e. offset) between in situ soil temperature measurements, based on time series from over 1200 1-km 2 pixels (summarized from 8519 unique temperature sensors) across all the world's major terrestrial biomes, and coarse-grained air temperature estimates from ERA5-Land (an atmospheric reanalysis by the European Centre for Medium-Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (-0.7 ± 2.3°C). The observed substantial and biome-specific offsets emphasize that the projected impacts of climate and climate change on near-surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil-related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications., (© 2022 The Authors. Global Change Biology published by John Wiley & Sons Ltd.)

Soil health is defined as the soil's capacity to deliver ecosystem functions within environmental constraints. On tree plantations, clear-cutting and land preparation between two crop cycles cause severe physical disturbances to the soil and seriously deplete soil organic carbon and biodiversity. Rubber, one of the main tropical perennial crops worldwide, has a plantation life cycle of 25 to 40 years, with successive replanting cycles on the same plot. The aim of this study was to assess the effects of clear-cutting disturbance on three soil functions (carbon transformation, nutrient cycling and structure maintenance) and their restoration after the planting of the new rubber crop, in two contrasting soil situations (Arenosol and Ferralsol) in Côte d'Ivoire. In this 18-month diachronic study, we intensively measured soil functions under different scenarios as regards the management of logging residues and the use or not of a legume cover crop. We investigated the relationship between soil macrofauna diversity and soil heath. At both sites, clear-cutting and land preparation disturbed carbon transformation and nutrient cycling significantly and, to a lesser extent, structure maintenance function. When logging residues were applied, carbon transformation and structure maintenance functions were fully restored within 12 to 18 months after disturbance. By contrast, no restoration of nutrient cycling was observed over the study period. A legume cover crop mainly improved the restoration of carbon transformation. We found a strong relationship (P ≤ 0.001; R 2  = 0.62-0.66) between soil macrofauna diversity and soil health. Our overall results were very similar at the two sites, despite their contrasting soil conditions. Keeping logging residues in the plots and sowing a legume in the inter-row at replanting accelerated the restoration of soil functions after major disturbance caused by clear-cutting and land preparation. Our results confirm the necessity of taking soil macrofauna diversity into account in the management of tropical perennial crops., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2021 Elsevier B.V. All rights reserved.)

Understanding how evolutionary history and the coordination between trait trade-off axes shape the drought tolerance of trees is crucial to predict forest dynamics under climate change. Here, we compiled traits related to drought tolerance and the fast-slow and stature-recruitment trade-off axes in 601 tropical woody species to explore their covariations and phylogenetic signals. We found that xylem resistance to embolism (P50) determines the risk of hydraulic failure, while the functional significance of leaf turgor loss point (TLP) relies on its coordination with water use strategies. P50 and TLP exhibit weak phylogenetic signals and substantial variation within genera. TLP is closely associated with the fast-slow trait axis: slow species maintain leaf functioning under higher water stress. P50 is associated with both the fast-slow and stature-recruitment trait axes: slow and small species exhibit more resistant xylem. Lower leaf phosphorus concentration is associated with more resistant xylem, which suggests a (nutrient and drought) stress-tolerance syndrome in the tropics. Overall, our results imply that (1) drought tolerance is under strong selective pressure in tropical forests, and TLP and P50 result from the repeated evolutionary adaptation of closely related taxa, and (2) drought tolerance is coordinated with the ecological strategies governing tropical forest demography. These findings provide a physiological basis to interpret the drought-induced shift toward slow-growing, smaller, denser-wooded trees observed in the tropics, with implications for forest restoration programmes., (© 2022 John Wiley & Sons Ltd.)

Indole-3-acetic acid (IAA) synthesis is a major property of rhizosphere bacteria. The IAA-producing ability of rhizobacteria may be influenced by agricultural management. We therefore evaluated the IAA-producing potential of rhizobacteria isolated during organic rice farming (ORF) and conventional rice farming (CRF) in Thung Kula Rong Hai areas of Thailand. The results indicated that ORF gave a significantly higher percentage of IAA producers (95·8%) than CRF (69·9%). The average IAA values of the ORF isolates were around two times higher than those of the CRF isolates both in the absence (12·8 and 5·8 μg IAA ml -1 , respectively) and presence of L-tryptophan (L-Trp) (35·2 and 17·2 μg IAA ml -1 , respectively). The 16S rRNA gene sequence analysis indicated that the 23 selected isolates belonged to 8 different genera-Sinomonas sp., Micrococcus sp., Microbacterium sp., Fictibacillus sp., Bacillus sp., Burkholderia sp., Leclercia sp. and Enterobacter sp. Interestingly, only three ORF isolates, i.e. ORF15-20 (Micrococcus sp.), ORF15-21 (Sinomonas sp.) and ORF15-23 (Sinomonas sp.), exhibited high IAA production ability without L-Trp (128·5, 160·8 and 174·7 μg IAA ml -1 , respectively). Meanwhile, a slight decrease in IAA production with L-Trp was noticed, suggesting that the L-Trp was not used for the IAA synthesis of these isolates. Biopriming with rhizobacterial isolates significantly enhanced the rate of germination of KDML 105 rice seeds compared to the control., (© 2021 The Society for Applied Microbiology.)

Mycorrhizal colonization of roots is traditionally evaluated by empirical methods, such as root microscopy. We compared this method with data from using a real time PCR technique, and determined the correlation between methods, indicating particularities of a promising system for a quick and accurate molecular diagnostic of arbuscular mycorrhization., (Copyright © 2021 Elsevier B.V. All rights reserved.)

In coffee, fruit production on a given shoot drops after some years of high yield, triggering pruning to induce resprouting. The timing of pruning is a crucial farmer's decision affecting yield and labour. One reason for fruit production drop could be the exhaustion of resources, particularly the non-structural carbohydrates (NSC). To test this hypothesis in a Coffea L. arabica agroforestry system, we measured the concentrations of NSC, carbon (C) and nitrogen (N) in leaves, stems and stumps of the coffee plants, 2 and 5 years after pruning. We also compared shaded vs full sun plants. For that purpose, both analytical reference and visible and near infrared reflectance spectroscopy (VNIRS) methods were used. As expected, concentrations of biochemical variables linked to photosynthesis activity (N, glucose, fructose, sucrose) decreased from leaves to stems, and then to stumps. In contrast, variables linked more closely to plant structure and reserves (total C, C:N ratio, starch concentration) were higher in long lifespan organs like stumps. Shading had little effect on most measured parameters, contrary to expectations. Concentrations of N, glucose and fructose were higher in 2-year-old organs. Conversely, starch concentration in perennial stumps was three times higher 5 years after pruning than 2 years after pruning, despite high fruit production. Therefore, the drop in fruit production occurring after 5-6 years was not due to a lack of NSC on plant scale. Starch accumulation in perennial organs concurrently to other sinks, such as fruit growth, could be considered as a 'survival' strategy, which may be a relic of the behaviour of wild coffee (a tropical shade-tolerant plant). This study confirmed that VNIRS is a promisingly rapid and cost-effective option for starch monitoring (coefficient of determination for validation, R2val = 0.91), whereas predictions were less accurate for soluble sugars, probably due to their too similar spectral signature., (© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permission@oup.com.)

Plant diversification through crop rotation or agroforestry is a promising way to improve sustainability of agroecosystems. Nonetheless, criteria to select the most suitable plant communities for agroecosystems diversification facing contrasting environmental constraints need to be refined. Here, we compared the impacts of 24 different plant communities on soil fertility across six tropical agroecosystems: either on highly weathered Ferralsols, with strong P limitation, or on partially weathered soils derived from volcanic material, with major N limitation. In each agroecosystem, we tested several plant communities for diversification, as compared to a matching low diversity management for their cropping system. Plant residue restitution, N, P and lignin contents were measured for each plant community. In parallel, the soil under each community was analyzed for organic C and N, inorganic N, Olsen P, soil pH and nematode community composition. Soil potential fertility was assessed with plant bioassays under greenhouse controlled climatic conditions. Overall, plant diversification had a positive effect on soil fertility across all sites, with contrasting effects depending on soil type and legumes presence in the community. Communities with legumes improved soil fertility indicators of volcanic soils, which was demonstrated through significantly higher plant biomass production in the bioassays (+18%) and soil inorganic N (+26%) compared to the low diversity management. Contrastingly, communities without legumes were the most beneficial in Ferralsols, with increases in plant biomass production in the bioassays (+39%), soil Olsen P (+46%), soil C (+26%), and pH (+5%). Piecewise structural equation models with Shipley's test revealed that plant diversification impacts on volcanic soil fertility were related to soil N availability, driven by litter N. Meanwhile, Ferralsols fertility was related to soil P availability, driven by litter P. These findings underline the importance of multifactorial and multi-sites experiments to inform trait-based frameworks used in designing optimal plant diversification in agroecological systems., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2021 Elsevier B.V. All rights reserved.)

Thai jasmine rice ( Oryza sativa L. KDML105), particularly from inland salt-affected areas in Thailand, is both domestically and globally valued for its unique aroma and high grain quality. The key aroma compound, 2-acetyl-1-pyrroline (2AP), has undergone a gradual degradation due to anthropogenic soil salinization driven by excessive chemical input and climate change. Here, we propose a cheaper and an ecofriendly solution to improve the 2AP levels, based on the application of plant growth-promoting rhizobacteria (PGPR). In the present study, nine PGPR isolates from rice rhizosphere were investigated for the 2AP production in liquid culture and the promotion potential for 2AP content in KDML105 rice seedlings under four NaCl concentrations (0, 50, 100, and 150 mM NaCl). The inoculation of 2AP-producing rhizobacteria resulted in an increase in 2AP content in rice seedling leaves with the maximum enhancement from Sinomonas sp. ORF15-23 at 50 mM NaCl (19.6 µg·kg -1 ), corresponding to a 90.2% increase as compared to the control. Scanning electron microscopy confirmed the colonization of Sinomonas sp. ORF15-23 in the roots of salinity-stressed KDML105 seedlings. Our results provide evidence that Sinomonas sp. ORF15-23 could be a promising PGPR isolate in promoting aroma level of Thai jasmine rice KDML105 under salt stress.

Arbuscular mycorrhizal fungi (AMF) are important symbionts of many plant species, facilitating the acquisition of soil nutrients by roots. We hypothesized that AMF root colonization is strongly influenced by the composition of the soil microbiome. Here, we evaluated mycorrhizal colonization of two plants, the grass Urochloa brizantha (Brachiaria) and the legume Crotalaria juncea (Crotalaria). These were cultivated in the same soil but hosting eight distinct microbiomes: natural soil (i); soil exposed to heat treatments for 1 h at 50 ºC (ii), 80 ºC (iii), or 100 ºC (iv); sterilized soil by autoclaving (AS) followed by re-inoculation of dilutions of the natural soil community at 10 -1 (v), 10 -3 (vi), and 10 -6 (vii); and AS without re-inoculation (viii). Microbial diversity (bacteria and fungi) was assessed through 16S rDNA and ITS1 metabarcoding, respectively, and the soil acid phosphatase activity (AP ASE ) was measured. Sequencing results showed the formation of distinct microbial communities according to the soil manipulations, which also correlated with the decline of AP ASE . Subsequently, seedlings of Brachiaria and Crotalaria were grown in those soils inoculated separately with three AMF (Acaulospora colombiana, Rhizophagus clarus, and Dentiscutata heterogama) which were compared to an AMF-free control treatment. Brachiaria showed higher colonization in natural soil when compared to the microbial community manipulations, regardless of the AMF species inoculated. In contrast, two mycorrhiza species were able to colonize Crotalaria under modified microbial communities at similar rates to natural soil. Furthermore, Brachiaria showed a possible inverse relationship between AP ASE and mycorrhization, but this trend was absent for Crotalaria. We conclude that mycorrhizal root colonization and soil acid phosphatase activity were associated with the structure of the soil microbiome, depending on the plant species evaluated., (© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)

Rubber powdery mildew disease (Oidium heveae) is a serious threat to natural rubber production (Hevea brasiliensis) in some rubber developing regions of the world. Both phenological- and meteorological-related factors have been reported influencing the powdery mildew disease. However, few studies have investigated the effects of both phenological- and meteorological-related factors on the disease. The objective of this study is to quantify the contributions of phenological- and meteorological-related factors to affect the disease. We used the partial least squares (PLS) regression method to comprehensively quantify the effects of thirty-five phenological related factors and six meteorological factors on the infection level of powdery mildew of rubber trees over 9-year records (2003-2011). The relative contributions of significant factors were further investigated by the variation partition analysis. We found that the most influential variables were the mean temperature during winter and the duration of leaf development to maturation which explained 32 and 26% of the variations in the infection level. We found the controlling role of winter mean temperature, for the first time, on the infection level of powdery mildew. The controlling role of winter temperature may have directly increase the infection level when winter temperature is high and indirectly increase the infection level through prolonging the duration of leaf development to maturation, although the duration itself had smaller influences. We detected a warming trend of the winter temperatures from 2003 to 2011, which indicates that the infection level of powdery mildew will be increased if the winter warming continues., (© 2021. ISB.)

Fertilization is commonly used to increase growth in forest plantations, but it may also affect tree water relations and responses to drought. Here, we measured changes in biomass, transpiration, sapwood-to-leaf area ratio (A s :A l ) and sap flow driving force (ΔΨ) during the 6-year rotation of tropical plantations of Eucalyptus grandis under controlled conditions for throughfall and potassium (K) fertilization. K fertilization increased final tree height by 8 m. Throughfall exclusion scarcely affected tree functioning because of deep soil water uptake. Tree growth increased in K-supplied plots and remained stable in K-depleted plots as tree height increased, while growth per unit leaf area increased in all plots. Stand transpiration and hydraulic conductance standardized per leaf area increased with height in K-depleted plots, but remained stable or decreased in K-supplied plots. Greater A l in K-supplied plots increased the hydraulic constraints on water use. This involved a direct mechanism through halved A s :A l in K-supplied plots relative to K-depleted plots, and an indirect mechanism through deteriorated water status in K-supplied plots, which prevented the increase in ΔΨ with tree height. K fertilization in tropical plantations reduces the hydraulic compensation to growth, which could increase the risk of drought-induced dieback under climate change., (© 2021 John Wiley & Sons Ltd.)

A growing concern on the deleterious effects of chemical inputs to the environment has been on the rise from the excessive use of chemical inputs leading to soil and water pollution, destruction to fauna and microbial communities, reduced soil fertility and increased crop disease susceptibility. In the Great Mekong Region (GMR), a large majority of the population relies on agriculture and faces severe challenges including decline in soil fertility, increased pests and diseases, leading to lower ecosystem productivity. In this region, over-dependence on chemical fertilizers also continues to impact negatively on soil health and the wider ecosystem. Agroecological practices, and beneficial microorganisms in particular, offer an affordable and sustainable alternative to mineral inputs for improved plant nutrition and soil health for optimal crop performance and sustainable production. Biofertilizers are a key component in integrated nutrient management as well as for increased economic benefits from reduced expenditure on chemical fertilizers, holistically leading to sustainable agriculture. To cope with the need for biofertilizer adoption for sustainable agricultural production, the countries in the GMR are putting efforts in promoting development and use of biofertilizers and making them available to farmers at affordable costs. Despite these efforts, farmers continue to use chemical fertilizers at high rates with the hope of increased yields instead of taking advantage of microbial products capable of providing plant nutrients while restoring or improving soil health. This study explored the current agricultural practices in the six countries in the GMR (China, Vietnam, Myanmar, Thailand, Cambodia and Lao PDR), the critical need for sustainable agroecological practices with a special emphasis on biofertilizers. We highlighted the current status, distribution, adoption and gaps of biofertilizer production in the GMR, in order to obtain an insight on the nature of biofertilizers, efficacy and production standards, adoption or lack of biofertilizers in the GMR., (Copyright © 2020 Elsevier Ltd. All rights reserved.)

Many studies have shown that introducing N 2 -fixing trees (e.g. Acacia mangium) in eucalypt plantations can increase soil N availability as a result of biological N 2 fixation and faster N cycling. Some studies have also shown improved eucalypt P nutrition. However, the effects of N 2 -fixing trees on P cycling in tropical soils remain poorly understood and site-dependent. Our study aimed to assess the effects of planting A. mangium trees in areas managed over several decades with eucalypt plantations on soil organic P (Po) forms and low molecular weight organic acids (LMWOAs). Soil samples were collected from two tropical sites, one in Brazil and one in the Congo. Five different treatments were sampled at each site: monospecific acacia, monospecific eucalypt, below acacias in mixed-species, below eucalypts in mixed-species as well as native vegetation. Po forms and LMWOAs were identified in sodium hydroxide soil extracts using ion chromatography and relationships between these data and available P were determined. At both sites, the concentrations of most Po forms and LMWOAs were different between native ecosystems and monospecific eucalypt and acacia plots. Also, patterns of Po and LMWOAs were clearly separated, with glucose-6-P found mainly under acacia and phytate and oxalate mainly under eucalypt. Despite the strongest changes occurred at site with a higher N 2 fixation and root development, acacia introduction was able to change the profile of organic P and LMWOAs in <10 years. The variations between available Pi, Po and LMWOA forms showed that P cycling was dominated by different processes at each site, that are rather physicochemical (via Pi desorption after LMWOAs release) at Itatinga and biological (via organic P mineralization) at Kissoko. Specific patterns of Po and LMWOAs forms found in soil sampled under acacia or eucalypt would therefore explain the effect of acacia introduction in both sites., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier B.V. All rights reserved.)

Rubber powdery mildew caused by the foliar fungi Oidium heveae is one of the main diseases affecting rubber plantations (Hevea brasiliensis) worldwide. It is particularly serious in sub-optimal growing areas, such as Xishuangbanna in SW China. To prevent and control this disease, fungicides causing serious environmental problems are widely used. Strong correlations between the infection level and the temperature variables were reported previously, but they were related to monthly data that did not allow unraveling the patterns during the entire sensitive period. We correlated the infection level of powdery mildew of rubber trees recorded over 2003-2011 with antecedent 365 days daily temperature variables using partial least squares (PLS) regression. Our PLS regression results showed that the infection level of powdery mildew responded differently to the temperature variables of the defoliation and refoliation periods. Further analysis with Kriging interpolation showed that the infection level increased by 20% and 11%, respectively, per 1 °C rise of the daily maximum and mean temperature in the defoliation season, while it decreased by 8% and 10%, respectively, per 1 °C rise of the daily maximum and temperature difference in the refoliation season. This pattern was likely linked to the effects of temperature on leaf phenology. It seems highly possible that the infection level of powdery mildew increases, as increasing trends of maximum temperature and mean temperature during the defoliation continue.

Variations in crown forms promote canopy space-use and productivity in mixed-species forests. However, we have a limited understanding on how this response is mediated by changes in within-tree biomass allocation. Here, we explored the role of changes in tree allometry, biomass allocation and architecture in shaping diversity-productivity relationships (DPRs) in the oldest tropical tree diversity experiment. We conducted whole-tree destructive biomass measurements and terrestrial laser scanning. Spatially explicit models were built at the tree level to investigate the effects of tree size and local neighbourhood conditions. Results were then upscaled to the stand level, and mixture effects were explored using a bootstrapping procedure. Biomass allocation and architecture substantially changed in mixtures, which resulted from both tree-size effects and neighbourhood-mediated plasticity. Shifts in biomass allocation among branch orders explained substantial shares of the observed overyielding. By contrast, root-to-shoot ratios, as well as the allometric relationships between tree basal area and aboveground biomass, were little affected by the local neighbourhood. Our results suggest that generic allometric equations can be used to estimate forest aboveground biomass overyielding from diameter inventory data. Overall, we demonstrate that shifts in tree biomass allocation are mediated by the local neighbourhood and promote DPRs in tropical forests., (© 2020 The Authors. New Phytologist © 2020 New Phytologist Foundation.)

Current analyses and predictions of spatially explicit patterns and processes in ecology most often rely on climate data interpolated from standardized weather stations. This interpolated climate data represents long-term average thermal conditions at coarse spatial resolutions only. Hence, many climate-forcing factors that operate at fine spatiotemporal resolutions are overlooked. This is particularly important in relation to effects of observation height (e.g. vegetation, snow and soil characteristics) and in habitats varying in their exposure to radiation, moisture and wind (e.g. topography, radiative forcing or cold-air pooling). Since organisms living close to the ground relate more strongly to these microclimatic conditions than to free-air temperatures, microclimatic ground and near-surface data are needed to provide realistic forecasts of the fate of such organisms under anthropogenic climate change, as well as of the functioning of the ecosystems they live in. To fill this critical gap, we highlight a call for temperature time series submissions to SoilTemp, a geospatial database initiative compiling soil and near-surface temperature data from all over the world. Currently, this database contains time series from 7,538 temperature sensors from 51 countries across all key biomes. The database will pave the way toward an improved global understanding of microclimate and bridge the gap between the available climate data and the climate at fine spatiotemporal resolutions relevant to most organisms and ecosystem processes., (© 2020 John Wiley & Sons Ltd.)

The FLUXNET2015 dataset provides ecosystem-scale data on CO 2 , water, and energy exchange between the biosphere and the atmosphere, and other meteorological and biological measurements, from 212 sites around the globe (over 1500 site-years, up to and including year 2014). These sites, independently managed and operated, voluntarily contributed their data to create global datasets. Data were quality controlled and processed using uniform methods, to improve consistency and intercomparability across sites. The dataset is already being used in a number of applications, including ecophysiology studies, remote sensing studies, and development of ecosystem and Earth system models. FLUXNET2015 includes derived-data products, such as gap-filled time series, ecosystem respiration and photosynthetic uptake estimates, estimation of uncertainties, and metadata about the measurements, presented for the first time in this paper. In addition, 206 of these sites are for the first time distributed under a Creative Commons (CC-BY 4.0) license. This paper details this enhanced dataset and the processing methods, now made available as open-source codes, making the dataset more accessible, transparent, and reproducible.

Rubber trees (Hevea brasiliensis) are the main source of natural rubber, extracted from latex, which exudes from the trunk after tapping. Tapped trees require large amounts of carbon (C) to regenerate the latex after its collection. Knowing the contribution of C sources involved in latex biosynthesis will help in understanding how rubber trees face this additional C demand. Whole crown 13CO2 pulse labelling was performed on 4-year-old rubber trees in June, when latex production was low, and in October, when it was high. 13C content was quantified in the foliage, phloem sap, wood, and latex. In both labelling periods, 13C was recovered in latex just after labelling, indicating that part of the carbohydrate was directly allocated to latex. However, significant amounts of 13C were still recovered in latex after 100 d and the peak was reached significantly later than in phloem sap, demonstrating the contribution of a reserve pool as a source of latex C. The contribution of new photosynthates to latex regeneration was faster and higher when latex metabolism was well established, in October, than in June. An improved understanding of C dynamics and the source-sink relationship in rubber tree is crucial to adapt tapping system practices and ensure sustainable latex production., (© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.)

Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives., (© 2019 The Authors. Global Change Biology published by John Wiley & Sons Ltd.)

Biochar is a potential tool to mitigate climate change by enhancing C sequestration in soils, but its use as a soil amendment to improve soil fertility and crop yields is still a contentious subject. In North East (NE) Thailand, biochar has been promoted to restore soil fertility in rubber tree plantations. Despite this, there is scarce information on the impact of biochar application on the soil biota, particularly on microbial communities associated with rubber trees. The effects of increasing doses of biochar on microbial communities were investigated in a rubber tree plantation in NE Thailand, 28 months after application. Biochar application resulted in increases of soil pH and nutrient contents and also had an impact on both bacterial and fungal communities. Changes in microbial composition and structure were observed although fungal communities were more markedly affected than bacterial communities. The nature and magnitude of the observed changes were strongly related to soil properties (pH, soil moisture and P content), while biochar dose (5, 10 or 20 tons/ha) effect was not significant. Our results highlight the need for additional research for a better understanding of the impact of biochar application on soil microbial communities and further cascading effects on ecosystem functions., (Copyright © 2019 Elsevier B.V. All rights reserved.)

Despite the strong ecological importance of ectomycorrhizal (ECM) fungi, their vertical distribution remains poorly understood. To our knowledge, ECM structures associated with trees have never been reported in depths below 2 meters. In this study, fine roots and ECM root tips were sampled down to 4-m depth during the digging of two independent pits differing by their water availability. A meta-barcoding approach based on Illumina sequencing of internal transcribed spacers (ITS1 and ITS2) was carried out on DNA extracted from root samples (fine roots and ECM root tips separately). ECM fungi dominated the root-associated fungal community, with more than 90% of sequences assigned to the genus Pisolithus. The morphological and barcoding results demonstrated, for the first time, the presence of ECM symbiosis down to 4-m. The molecular diversity of Pisolithus spp. was strongly dependent on depth, with soil pH and soil water content as primary drivers of the Pisolithus spp. structure. Altogether, our results highlight the importance to consider the ECM symbiosis in deep soil layers to improve our understanding of fine roots functioning in tropical soils.

Harvest residue management is a key issue for the sustainability of Eucalyptus plantations established on poor soils. Soil microbial communities contribute to soil fertility by the decomposition of the organic matter (OM), but little is known about the effect of whole-tree harvesting (WTH) in comparison to stem only harvesting (SOH) on soil microbial functional diversity in Eucalyptus plantations. We studied the effects of harvest residue management (branches, leaves, bark) of Eucalyptus grandis trees on soil enzymatic activities and community-level physiological profiles in a Brazilian plantation. We measured soil microbial enzymatic activities involved in OM decomposition and we compared the community level physiological profiles (CLPP) of the soil microbes in WTH and SOH plots. WTH decreased enzyme activities and catabolic potential of the soil microbial community. Furthermore, these negative effects on soil functional diversity were mainly observed below the 0-5 cm layer (5-10 and 10-20 cm), suggesting that WTH can be harmful to the soil health in these plantations.

Wood production in fast-growing Eucalyptus grandis trees is highly dependent on both potassium (K) fertilization and water availability but the molecular processes underlying wood formation in response to the combined effects of these two limiting factors remain unknown. E. grandis trees were submitted to four combinations of K-fertilization and water supply. Weighted gene co-expression network analysis and MixOmics-based co-regulation networks were used to integrate xylem transcriptome, metabolome and complex wood traits. Functional characterization of a candidate gene was performed in transgenic E. grandis hairy roots. This integrated network-based approach enabled us to identify meaningful biological processes and regulators impacted by K-fertilization and/or water limitation. It revealed that modules of co-regulated genes and metabolites strongly correlated to wood complex traits are in the heart of a complex trade-off between biomass production and stress responses. Nested in these modules, potential new cell-wall regulators were identified, as further confirmed by the functional characterization of EgMYB137. These findings provide new insights into the regulatory mechanisms of wood formation under stressful conditions, pointing out both known and new regulators co-opted by K-fertilization and/or water limitation that may potentially promote adaptive wood traits., (© 2019 The Authors. New Phytologist © 2019 New Phytologist Trust.)

While potassium fertilization increases growth yield in Brazilian eucalyptus plantations, it could also increase water requirements, making trees more vulnerable to drought. Sodium fertilization, which has been shown to promote eucalyptus growth compared to K-deficient trees, could partially mitigate this adverse effect of potassium. However, little is known about the influence of K and Na fertilization on the tree metabolic response to water deficit. The aim of the present study was thus to analyze the transcriptome of leaves sampled from Eucalyptus grandis trees subjected to 37% rainfall reduction, and fertilized with potassium (K), sodium (Na), compared to control trees (C). The multifactorial experiment was set up in a field with a throughfall exclusion system. Transcriptomic analysis was performed on leaves from two-year-old trees, and data analyzed using multifactorial statistical analysis and weighted gene co-expression network analysis (WGCNA). Significant sets of genes were seen to respond to rainfall reduction, in interaction with K or Na fertilization, or to fertilization only (regardless of the water supply regime). The genes were involved in stress signaling, primary and secondary metabolism, secondary cell wall formation and photosynthetic activity. Our focus on key genes related to cation transporters and aquaporins highlighted specific regulation of ion homeostasis, and plant adjustment to water deficit. While water availability significantly affects the transcriptomic response of eucalyptus species, this study points out that the transcriptomic response is highly dependent on the fertilization regime. Our study is based on the first large-scale field trial in a tropical region, specifically designed to study the interaction between water availability and nutrition in eucalyptus. To our knowledge, this is the first global transcriptomic analysis to compare the influence of K and Na fertilization on tree adaptive traits in water deficit conditions., Competing Interests: The authors have declared that no competing interests exist.