27 results on '"Baker, Joanne"'
Search Results
2. The Doctor Who theme and beyond: female pioneers of electronic music.
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Baker J
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- 2018
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3. Forgotten heroes of the Enigma story.
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Baker J
- Published
- 2018
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4. Recent advances in the understanding of endothelial barrier function and fluid therapy.
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Thind GS, Zanders S, and Baker JK
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- Animals, Capillary Permeability physiology, Humans, Microcirculation physiology, Models, Cardiovascular, Endothelium, Vascular metabolism, Fluid Therapy trends, Glycocalyx metabolism
- Abstract
Elucidation of the structural basis of endothelial barrier function and the study of transcapillary fluid exchange dynamics are areas of active research. There has been significant enhancement in our understanding of the ultrastructural basis of endothelial barrier function. The role of glycocalyx has received special attention. Experimental evidence has called for a revision in the classic Starling principle of transcapillary exchange. The glycocalyx model provides a potential structural mechanism for the revised Starling principle. This knowledge can provide the framework for understanding the volume expansion effect of fluid therapy and the physiological basis of fluid therapy., Competing Interests: Competing interests: None declared., (© Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.)
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- 2018
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5. Circulating antibodies against Plasmodium falciparum histidine-rich proteins 2 interfere with antigen detection by rapid diagnostic tests.
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Ho MF, Baker J, Lee N, Luchavez J, Ariey F, Nhem S, Oyibo W, Bell D, González I, Chiodini P, Gatton ML, Cheng Q, and McCarthy JS
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- Adolescent, Adult, Aged, Cambodia, Child, Child, Preschool, Diagnostic Errors, Female, Humans, Malaria, Falciparum immunology, Male, Melanesia, Middle Aged, Nigeria, Philippines, Sensitivity and Specificity, Young Adult, Antibodies, Protozoan blood, Antigens, Protozoan analysis, Antigens, Protozoan immunology, Diagnostic Tests, Routine methods, Malaria, Falciparum diagnosis, Protozoan Proteins analysis, Protozoan Proteins immunology
- Abstract
Background: Rapid diagnostic tests (RDTs) for detection of Plasmodium falciparum infection that target P. falciparum histidine-rich protein 2 (PfHRP2), a protein that circulates in the blood of patients infected with this species of malaria, are widely used to guide case management. Understanding determinants of PfHRP2 availability in circulation is therefore essential to understanding the performance of PfHRP2-detecting RDTs., Methods: The possibility that pre-formed host anti-PfHRP2 antibodies may block target antigen detection, thereby causing false negative test results was investigated in this study., Results: Anti-PfHRP2 antibodies were detected in 19/75 (25%) of plasma samples collected from patients with acute malaria from Cambodia, Nigeria and the Philippines, as well as in 3/28 (10.7%) asymptomatic Solomon Islands residents. Pre-incubation of plasma samples from subjects with high-titre anti-PfHRP2 antibodies with soluble PfHRP2 blocked the detection of the target antigen on two of the three brands of RDTs tested, leading to false negative results. Pre-incubation of the plasma with intact parasitized erythrocytes resulted in a reduction of band intensity at the highest parasite density, and a reduction of lower detection threshold by ten-fold on all three brands of RDTs tested., Conclusions: These observations indicate possible reduced sensitivity for diagnosis of P. falciparum malaria using PfHRP2-detecting RDTs among people with high levels of specific antibodies and low density infection, as well as possible interference with tests configured to detect soluble PfHRP2 in saliva or urine samples. Further investigations are required to assess the impact of pre-formed anti-PfHRP2 antibodies on RDT performance in different transmission settings.
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- 2014
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6. Cosmology: First light.
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Baker J
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- 2014
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7. Bullous pemphigoid associated with dipeptidyl peptidase IV inhibitors. A case report and review of literature.
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Attaway A, Mersfelder TL, Vaishnav S, and Baker JK
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Background: Bullous pemphigoid is a cutaneous autoimmune blistering disorder. The etiology for what precipitates this disease is not entirely clear at this point, although it has been associated with certain medications., Main Observation: We describe the case of a 70-year-old male with a past medical history of diabetes type 2 who developed a diffuse eruption of bullae with skin biopsy positive for bullous pemphigoid. He had previously been prescribed sitagliptin 50 mg daily for at least one year prior to onset of his disease. The medication was discontinued and the patient was treated with first IV and then oral steroids with good clinical outcome. There have been a few reports that have explored the relationship between DPP-IV inhibitors (gliptins) and bullous pemphigoid, including three case series and a report on sitagliptin associated allergic skin reactions submitted to the Adverse Event Reports System database of the FDA. According to the Naranjo ADR probability score there is a "possible" cause and effect relationship for this case., Conclusion: The enzyme DPP-IV is ubiquitously expressed in almost every organ system, including the skin. The exact mechanism at this time is unknown but is believed to be multifactorial involving many aspects of the immune system. Our case and the findings from our literature review further demonstrate a link between dipeptidyl peptidase-IV inhibitors and the development of bullous pemphigoid.
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- 2014
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8. Seismology: Quake catcher.
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Baker J
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- Building Codes statistics & numerical data, Disasters statistics & numerical data, Earthquakes mortality, Geographic Mapping, Humans, Information Dissemination, International Cooperation, Models, Theoretical, Risk Assessment methods, Software, Disasters prevention & control, Earthquakes statistics & numerical data
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- 2013
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9. Patient satisfaction with clinical nurse specialists' practice.
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Baker J, Kearins O, O'Sullivan E, and Casey M
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- Data Collection, Female, Humans, United Kingdom, Workforce, Nursing Staff standards, Patient Satisfaction, Specialties, Nursing
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A co-ordinated approach was adopted to monitor practice standards among clinical nurse specialists (CNSs) in West Midlands breast screening assessment nursing teams. A regional working party was assembled and a patient satisfaction survey was produced. Results of the survey show that for women attending for breast screening assessment, interaction with a CNS is perceived to be highly beneficial. Contact points vary with local practice, but the majority of women had contact with a CNS at some point during the assessment process for support and information. The results of the survey are used as an integral part of the quality assurance process in relation to CNS provision in the West Midlands. Services should aim to ensure that sufficient CNSs are available for women attending breast screening assessment centres.
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- 2013
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10. Structural pituitary abnormalities associated with CHARGE syndrome.
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Gregory LC, Gevers EF, Baker J, Kasia T, Chong K, Josifova DJ, Caimari M, Bilan F, McCabe MJ, and Dattani MT
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- Amino Acid Sequence, Base Sequence, CHARGE Syndrome epidemiology, CHARGE Syndrome genetics, Child, Cohort Studies, Consensus Sequence, DNA Helicases genetics, DNA Mutational Analysis, DNA-Binding Proteins genetics, Humans, Hypopituitarism epidemiology, Hypopituitarism etiology, Hypopituitarism genetics, Male, Models, Biological, Septo-Optic Dysplasia complications, Septo-Optic Dysplasia epidemiology, Septo-Optic Dysplasia genetics, CHARGE Syndrome complications, Hypopituitarism complications, Pituitary Gland abnormalities
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Introduction: CHARGE syndrome is a multisystem disorder that, in addition to Kallmann syndrome/isolated hypogonadotrophic hypogonadism, has been associated with anterior pituitary hypoplasia (APH). However, structural abnormalities such as an ectopic posterior pituitary (EPP) have not yet been described in such patients., Objective: The aims of the study were: 1) to describe the association between CHARGE syndrome and a structurally abnormal pituitary gland; and 2) to investigate whether CHD7 variants, which are identified in 65% of CHARGE patients, are common in septo-optic dysplasia /hypopituitarism., Methods: We describe 2 patients with features of CHARGE and EPP. CHD7 was sequenced in these and other patients with septo-optic dysplasia/hypopituitarism., Results: EPP, APH, and GH, TSH, and probable LH/FSH deficiency were present in 1 patient, and EPP and APH with GH, TSH, LH/FSH, and ACTH deficiency were present in another patient, both of whom had features of CHARGE syndrome. Both had variations in CHD7 that were novel and undetected in control cohorts or in the international database of CHARGE patients, but were also present in their unaffected mothers. No CHD7 variants were detected in the patients with septo-optic dysplasia/hypopituitarism without additional CHARGE features., Conclusion: We report a novel association between CHARGE syndrome and structural abnormalities of the pituitary gland in 2 patients with variations in CHD7 that are of unknown significance. However, CHD7 mutations are an uncommon cause of septo-optic dysplasia or hypopituitarism. Our data suggest the need for evaluation of pituitary function/anatomy in patients with CHARGE syndrome.
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- 2013
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11. Perceptions of barriers to discussing and testing for sexually transmitted infections in a convenience sample of general practice patients.
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Baker JR, Arnold-Reed DE, Brett T, Hince DA, O'Ferrall I, and Bulsara MK
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- Adolescent, Adult, Aged, Australia, Clinical Competence, Communication, Family Practice methods, Female, Humans, Male, Middle Aged, Sexual Partners psychology, Sexually Transmitted Diseases therapy, Social Behavior, Surveys and Questionnaires, Young Adult, Attitude to Health, General Practice methods, Health Services Accessibility, Physician-Patient Relations, Sexually Transmitted Diseases diagnosis, Sexually Transmitted Diseases psychology
- Abstract
We aimed to identify patient perceptions of barriers to discussing sexually transmitted infections (STIs) at the primary care level. An anonymous questionnaire was available to patients (16-70 years) in the waiting room of four metropolitan Perth general practices. Results are based on 370 participant views (9.5% of the potential target population). Patients felt comfortable discussing STIs with their general practitioner (GP) and their level of comfort would be enhanced if they knew their GP had a special interest or qualification in sexual health. Willingness to discuss issues increased or remained unchanged if the GP took time to explain it to them or was a good listener. Patients were willing to discuss STIs if they were a new patient and irrespective of the GP's gender and age. Fewer patients were willing to discuss STIs if they knew the GP socially. Patients who had sex with a new partner were willing to request a STI test from their GP. Patients were not embarrassed if discussion was initiated in a consultation unrelated to sexual health and did not mind discussing the topic in the presence of a partner or parent, though this depended on circumstances. Waiting room STI test advertising did not affect patient comfort level. Patients would involve their GP when seeking information about STIs. Patients have fewer barriers to discussing sexual health matters than perceived by GPs.
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- 2013
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12. Evaluation of the safety and tolerability of a short higher-dose primaquine regimen for presumptive anti-relapse therapy in healthy subjects.
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Ebringer A, Heathcote G, Baker J, Waller M, Shanks GD, and Edstein MD
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- Abdominal Pain chemically induced, Adult, Antimalarials adverse effects, Cyanosis chemically induced, Drug Administration Schedule, Female, Headache chemically induced, Humans, Indonesia epidemiology, Malaria, Vivax drug therapy, Male, Nausea chemically induced, Patient Compliance, Primaquine adverse effects, Secondary Prevention, Sleep Initiation and Maintenance Disorders chemically induced, Treatment Outcome, Antimalarials administration & dosage, Malaria, Vivax prevention & control, Military Personnel, Primaquine administration & dosage
- Abstract
The safety and tolerability of primaquine (PQ) administered as a short higher-dose (30mg twice daily for 7 days) regimen in 203 Australian Defence Force personnel was evaluated in an open-label presumptive anti-relapse therapy study. No clinically significant differences were measured in the subjects' haematological and biochemical indices before and after PQ treatment. The most common adverse events were nausea, abdominal pain, headache and insomnia, many of which were mild in severity (30%; 60/203) and transient; 19% of subjects (39/203) experienced moderate (with some interference with daily duties requiring no or minimal medical therapy) adverse events. Two subjects (1%) had severe gastrointestinal adverse events requiring cessation of medication, but neither was seriously ill. Ten subjects (5%) had peripheral cyanosis (blueness of the lips), but none reported any respiratory compromise. These findings suggest that the short higher-dose PQ regimen is safe and well tolerated, which could improve PQ compliance and effectiveness., (Crown Copyright © 2011. Published by Elsevier Ltd. All rights reserved.)
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- 2011
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13. Laboratory demonstration of a prozone-like effect in HRP2-detecting malaria rapid diagnostic tests: implications for clinical management.
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Luchavez J, Baker J, Alcantara S, Belizario V Jr, Cheng Q, McCarthy JS, and Bell D
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- False Negative Reactions, Humans, Antigens, Protozoan analysis, Clinical Laboratory Techniques methods, Diagnostic Tests, Routine methods, Malaria, Falciparum diagnosis, Plasmodium falciparum isolation & purification, Protozoan Proteins analysis
- Abstract
Background: Malaria rapid diagnostic tests (RDTs) are now widely used for prompt on-site diagnosis in remote endemic areas where reliable microscopy is absent. Aberrant results, whereby negative test results occur at high parasite densities, have been variously reported for over a decade and have led to questions regarding the reliability of the tests in clinical use., Methods: In the first trial, serial dilutions of recombinant HRP2 antigen were tested on an HRP2-detectiing RDT. In a second trial, serial dilutions of culture-derived Plasmodium falciparum parasites were tested against three HRP2-detecting RDTs., Results: A prozone-like effect occurred in RDTs at a high concentration of the target antigen, histidine-rich protein-2 (above 15,000 ng/ml), a level that corresponds to more than 312000 parasites per μL. Similar results were noted on three RDT products using dilutions of cultured parasites up to a parasite density of 25%. While reduced line intensity was observed, no false negative results occurred., Conclusions: These results suggest that false-negative malaria RDT results will rarely occur due to a prozone-like effect in high-density infections, and other causes are more likely. However, RDT line intensity is poorly indicative of parasite density in high-density infections and RDTs should, therefore, not be considered quantitative. Immediate management of suspected severe malaria should rely on clinical assessment or microscopy. Evaluation against high concentrations of antigen should be considered in malaria RDT product development and lot-release testing, to ensure that very weak or false negative results will not occur at antigen concentrations that might be seen clinically.
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- 2011
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14. Transcription and expression of Plasmodium falciparum histidine-rich proteins in different stages and strains: implications for rapid diagnostic tests.
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Baker J, Gatton ML, Peters J, Ho MF, McCarthy JS, and Cheng Q
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- Animals, Humans, Plasmodium falciparum genetics, Plasmodium falciparum metabolism, Public Health, Sensitivity and Specificity, Species Specificity, Antigens, Protozoan genetics, Antigens, Protozoan metabolism, Gene Expression Regulation, Developmental, Life Cycle Stages genetics, Malaria, Falciparum diagnosis, Plasmodium falciparum growth & development, Protozoan Proteins genetics, Protozoan Proteins metabolism, Transcription, Genetic
- Abstract
Background: Although rapid diagnostic tests (RDTs) for Plasmodium falciparum infection that target histidine rich protein 2 (PfHRP2) are generally sensitive, their performance has been reported to be variable. One possible explanation for variable test performance is differences in expression level of PfHRP in different parasite isolates., Methods: Total RNA and protein were extracted from synchronised cultures of 7 P. falciparum lines over 5 time points of the life cycle, and from synchronised ring stages of 10 falciparum lines. Using quantitative real-time polymerase chain reaction, Western blot analysis and ELISA we investigated variations in the transcription and protein levels of pfhrp2, pfhrp3 and PfHRP respectively in the different parasite lines, over the parasite intraerythrocytic life cycle., Results: Transcription of pfhrp2 and pfhrp3 in different parasite lines over the parasite life cycle was observed to vary relative to the control parasite K1. In some parasite lines very low transcription of these genes was observed. The peak transcription was observed in ring-stage parasites. Pfhrp2 transcription was observed to be consistently higher than pfhrp3 transcription within parasite lines. The intraerythrocytic lifecycle stage at which the peak level of protein was present varied across strains. Total protein levels were more constant relative to total mRNA transcription, however a maximum 24 fold difference in expression at ring-stage parasites relative to the K1 strain was observed., Conclusions: The levels of transcription of pfhrp2 and pfhrp3, and protein expression of PfHRP varied between different P. falciparum strains. This variation may impact on the detection sensitivity of PfHRP2-detecting RDTs.
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- 2011
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15. Global sequence variation in the histidine-rich proteins 2 and 3 of Plasmodium falciparum: implications for the performance of malaria rapid diagnostic tests.
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Baker J, Ho MF, Pelecanos A, Gatton M, Chen N, Abdullah S, Albertini A, Ariey F, Barnwell J, Bell D, Cunningham J, Djalle D, Echeverry DF, Gamboa D, Hii J, Kyaw MP, Luchavez J, Membi C, Menard D, Murillo C, Nhem S, Ogutu B, Onyor P, Oyibo W, Wang SQ, McCarthy J, and Cheng Q
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- Animals, Antigens, Protozoan immunology, DNA, Protozoan genetics, Genetic Variation, Humans, Immunoassay standards, Malaria, Falciparum genetics, Malaria, Falciparum parasitology, Plasmodium falciparum immunology, Polymerase Chain Reaction, Protozoan Proteins immunology, Reagent Kits, Diagnostic, Sensitivity and Specificity, Sequence Analysis, DNA, Antigens, Protozoan genetics, Immunoassay methods, Malaria, Falciparum diagnosis, Plasmodium falciparum genetics, Plasmodium falciparum isolation & purification, Protozoan Proteins genetics
- Abstract
Background: Accurate diagnosis is essential for prompt and appropriate treatment of malaria. While rapid diagnostic tests (RDTs) offer great potential to improve malaria diagnosis, the sensitivity of RDTs has been reported to be highly variable. One possible factor contributing to variable test performance is the diversity of parasite antigens. This is of particular concern for Plasmodium falciparum histidine-rich protein 2 (PfHRP2)-detecting RDTs since PfHRP2 has been reported to be highly variable in isolates of the Asia-Pacific region., Methods: The pfhrp2 exon 2 fragment from 458 isolates of P. falciparum collected from 38 countries was amplified and sequenced. For a subset of 80 isolates, the exon 2 fragment of histidine-rich protein 3 (pfhrp3) was also amplified and sequenced. DNA sequence and statistical analysis of the variation observed in these genes was conducted. The potential impact of the pfhrp2 variation on RDT detection rates was examined by analysing the relationship between sequence characteristics of this gene and the results of the WHO product testing of malaria RDTs: Round 1 (2008), for 34 PfHRP2-detecting RDTs., Results: Sequence analysis revealed extensive variations in the number and arrangement of various repeats encoded by the genes in parasite populations world-wide. However, no statistically robust correlation between gene structure and RDT detection rate for P. falciparum parasites at 200 parasites per microlitre was identified., Conclusions: The results suggest that despite extreme sequence variation, diversity of PfHRP2 does not appear to be a major cause of RDT sensitivity variation.
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- 2010
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16. Mars Reconnaissance Orbiter. Water, water, not everywhere? Introduction to special issue.
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Baker J
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- Extraterrestrial Environment, Mars, Water
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- 2007
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17. Assessing the genetic diversity of the aldolase genes of Plasmodium falciparum and Plasmodium vivax and its potential effect on performance of aldolase-detecting rapid diagnostic tests.
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Lee N, Baker J, Bell D, McCarthy J, and Cheng Q
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- Animals, DNA, Protozoan chemistry, DNA, Protozoan genetics, Humans, Malaria parasitology, Malaria, Falciparum diagnosis, Malaria, Falciparum parasitology, Malaria, Vivax diagnosis, Malaria, Vivax parasitology, Molecular Diagnostic Techniques, Molecular Sequence Data, Plasmodium falciparum enzymology, Plasmodium vivax enzymology, Protozoan Proteins genetics, Sequence Analysis, DNA, Aldehyde-Lyases genetics, Conserved Sequence genetics, Genetic Variation, Malaria diagnosis, Plasmodium falciparum genetics, Plasmodium falciparum isolation & purification, Plasmodium vivax genetics, Plasmodium vivax isolation & purification
- Abstract
Malaria-specific rapid diagnostic tests (RDTs) targeting aldolase show highly variable sensitivities. We assessed diversity in Plasmodium falciparum and P. vivax aldolases by sequencing the coding genes from parasites of various origins. The results show that aldolases are highly conserved, indicating that antigenic diversity is not a cause of variable RDT sensitivity.
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- 2006
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18. Effect of sequence variation in Plasmodium falciparum histidine- rich protein 2 on binding of specific monoclonal antibodies: Implications for rapid diagnostic tests for malaria.
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Lee N, Baker J, Andrews KT, Gatton ML, Bell D, Cheng Q, and McCarthy J
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- Animals, Antibodies, Monoclonal immunology, Antibodies, Protozoan immunology, Blotting, Western, DNA, Protozoan chemistry, DNA, Protozoan genetics, Epitopes genetics, Epitopes immunology, False Negative Reactions, Humans, Molecular Diagnostic Techniques, Molecular Sequence Data, Nucleic Acid Hybridization, Polymorphism, Genetic, Sensitivity and Specificity, Sequence Analysis, DNA, Malaria, Falciparum diagnosis, Plasmodium falciparum genetics, Plasmodium falciparum immunology, Proteins genetics, Proteins immunology, Protozoan Proteins genetics, Protozoan Proteins immunology
- Abstract
The ability to accurately diagnose malaria infections, particularly in settings where laboratory facilities are not well developed, is of key importance in the control of this disease. Rapid diagnostic tests (RDTs) offer great potential to address this need. Reports of significant variation in the field performance of RDTs based on the detection of Plasmodium falciparum histidine-rich protein 2 (HRP2) (PfHRP2) and of significant sequence polymorphism in PfHRP2 led us to evaluate the binding of four HRP2-specific monoclonal antibodies (MABs) to parasite proteins from geographically distinct P. falciparum isolates, define the epitopes recognized by these MABs, and relate the copy number of the epitopes to MAB reactivity. We observed a significant difference in the reactivity of the same MAB to different isolates and between different MABs tested with single isolates. When the target epitopes of three of the MABs were determined and mapped onto the peptide sequences of the field isolates, significant variability in the frequency of these epitopes was observed. These findings support the role of sequence variation as an explanation for variations in the performance of HRP2-based RDTs and point toward possible approaches to improve their diagnostic sensitivities.
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- 2006
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19. The falcon has landed. Introduction to special issue.
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Baker J
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- 2006
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20. Cassini at Enceladus. Tiger, tiger, burning bright.
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Baker J
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- Extraterrestrial Environment, Spacecraft, Saturn
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- 2006
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21. Efficacy of sulfadoxine-pyrimethamine in the treatment of uncomplicated Plasmodium falciparum malaria in East Timor.
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Burns M, Baker J, Auliff AM, Gatton ML, Edstein MD, and Cheng Q
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- Adolescent, Adult, Aged, Alleles, Animals, Antigens, Protozoan genetics, Antimalarials blood, Child, Child, Preschool, DNA, Protozoan chemistry, DNA, Protozoan genetics, Dihydropteroate Synthase genetics, Drug Combinations, Female, Humans, Malaria, Falciparum blood, Malaria, Falciparum parasitology, Male, Merozoite Surface Protein 1 genetics, Middle Aged, Mutation, Plasmodium falciparum enzymology, Plasmodium falciparum genetics, Polymerase Chain Reaction, Protozoan Proteins genetics, Pyrimethamine blood, Sulfadoxine blood, Tetrahydrofolate Dehydrogenase genetics, Timor-Leste, Treatment Outcome, Antimalarials therapeutic use, Malaria, Falciparum drug therapy, Plasmodium falciparum growth & development, Pyrimethamine therapeutic use, Sulfadoxine therapeutic use
- Abstract
The efficacy of sulfadoxine-pyrimethamine (SP) in East Timor is unknown. We treated 38 individuals with uncomplicated Plasmodium falciparum malaria with SP and monitored the outcome for 28 days. Recrudescent parasitemia, confirmed by genotyping, were detected in three individuals resulting in a late treatment failure rate of 7.9% (95% confidence interval = 1.7-21.4%). The results suggest that SP is still efficacious in treating uncomplicated P. falciparum malaria in East Timor. However, the useful life of SP in East Timor may be limited because 80% of the parasites in our samples were found to already carry double mutations in P. falciparum dihydrofolate reductase (S108N/C59R). The data from this study also highlights that the presence of gametocytes may significantly influence the estimate of SP efficacy determined by genotyping.
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- 2006
22. Genetic diversity of Plasmodium falciparum histidine-rich protein 2 (PfHRP2) and its effect on the performance of PfHRP2-based rapid diagnostic tests.
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Baker J, McCarthy J, Gatton M, Kyle DE, Belizario V, Luchavez J, Bell D, and Cheng Q
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- Amino Acid Sequence, Animals, Antigenic Variation, Base Sequence, DNA, Protozoan chemistry, DNA, Protozoan genetics, Humans, Logistic Models, Malaria, Falciparum microbiology, Microsatellite Repeats genetics, Polymerase Chain Reaction, Proteins, Reagent Kits, Diagnostic, Sensitivity and Specificity, Sequence Analysis, DNA, Antigens, Protozoan genetics, Malaria, Falciparum diagnosis, Plasmodium falciparum genetics, Protozoan Proteins genetics
- Abstract
Rising costs of antimalarial agents are increasing the demand for accurate diagnosis of malaria. Rapid diagnostic tests (RDTs) offer great potential to improve the diagnosis of malaria, particularly in remote areas. Many RDTs are based on the detection of Plasmodium falciparum histidine-rich protein (PfHRP) 2, but reports from field tests have questioned their sensitivity and reliability. We hypothesize that the variability in the results of PfHRP2-based RDTs is related to the variability in the target antigen. We tested this hypothesis by examining the genetic diversity of PfHRP2, which includes numerous amino acid repeats, in 75 P. falciparum lines and isolates originating from 19 countries and testing a subset of parasites by use of 2 PfHRP2-based RDTs. We observed extensive diversity in PfHRP2 sequences, both within and between countries. Logistic regression analysis indicated that 2 types of repeats were predictive of RDT detection sensitivity (87.5% accuracy), with predictions suggesting that only 84% of P. falciparum parasites in the Asia-Pacific region are likely to be detected at densities < or = 250 parasites/microL. Our data also indicated that PfHRP3 may play a role in the performance of PfHRP2-based RDTs. These findings provide an alternative explanation for the variable sensitivity in field tests of malaria RDTs that is not due to the quality of the RDTs.
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- 2005
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23. Nitric oxide production and nitric oxide synthase activity in malaria-exposed Papua New Guinean children and adults show longitudinal stability and no association with parasitemia.
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Boutlis CS, Weinberg JB, Baker J, Bockarie MJ, Mgone CS, Cheng Q, and Anstey NM
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- Adolescent, Adult, Aged, Antibodies, Protozoan blood, Child, Child, Preschool, Female, Humans, Immunoglobulin E blood, Infant, Longitudinal Studies, Malaria drug therapy, Malaria immunology, Male, Middle Aged, Parasitemia drug therapy, Parasitemia immunology, Malaria metabolism, Nitric Oxide biosynthesis, Nitric Oxide Synthase metabolism, Parasitemia metabolism
- Abstract
Individuals in areas of intense malaria transmission exhibit resistance (or tolerance) to levels of parasitemia in their blood that would normally be associated with febrile illness in malaria-naive subjects. The resulting level of parasitemia associated with illness (the pyrogenic threshold) is highest in childhood and lowest in adulthood. Clinical parallels between malarial and bacterial endotoxin tolerance have led to the supposition that both share common physiological processes, with nitric oxide (NO) proposed as a candidate mediator. The hypotheses that NO mediates tolerance and blood stage parasite killing in vivo were tested by determining its relationship to age and parasitemia cross-sectionally and longitudinally in a population of 195 children and adults from Papua New Guinea encountering intense malaria exposure. Despite pharmacological clearance of asymptomatic parasitemia, NO production and mononuclear cell NO synthase (NOS) activity were remarkably stable within individuals over time, were not influenced by parasitemia, and varied little with age. These results contrast with previous smaller cross-sectional studies. Baseline NO production and NOS activity did not protect against recurrent parasitemia, consistent with previous data suggesting that NO does not have antiparasitic effects against blood stage infection in vivo. The NO indices studied were markedly higher in specimens from study subjects than in samples from Australian controls, and NOS activity was significantly associated with plasma immunoglobulin E levels, consistent with induction of NO by chronic exposure to other infections and/or host genetic factors. These results suggest that NO is unlikely to mediate killing of blood stage parasites in this setting and is unlikely to be the primary mediator in the acquisition or maintenance of malarial tolerance.
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- 2004
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24. Sulfadoxine resistance in Plasmodium vivax is associated with a specific amino acid in dihydropteroate synthase at the putative sulfadoxine-binding site.
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Korsinczky M, Fischer K, Chen N, Baker J, Rieckmann K, and Cheng Q
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- Amino Acid Sequence, Amino Acid Substitution, Animals, Antimalarials metabolism, Binding Sites, Cloning, Molecular, Crystallization, DNA, Complementary genetics, DNA, Protozoan genetics, Drug Resistance, Gene Library, Models, Molecular, Molecular Sequence Data, Plasmodium vivax enzymology, RNA, Protozoan genetics, Reverse Transcriptase Polymerase Chain Reaction, Sulfadoxine metabolism, Antimalarials pharmacology, Dihydropteroate Synthase genetics, Plasmodium vivax drug effects, Plasmodium vivax genetics, Sulfadoxine pharmacology
- Abstract
Sulfadoxine is predominantly used in combination with pyrimethamine, commonly known as Fansidar, for the treatment of Plasmodium falciparum. This combination is usually less effective against Plasmodium vivax, probably due to the innate refractoriness of parasites to the sulfadoxine component. To investigate this mechanism of resistance by P. vivax to sulfadoxine, we cloned and sequenced the P. vivax dhps (pvdhps) gene. The protein sequence was determined, and three-dimensional homology models of dihydropteroate synthase (DHPS) from P. vivax as well as P. falciparum were created. The docking of sulfadoxine to the two DHPS models allowed us to compare contact residues in the putative sulfadoxine-binding site in both species. The predicted sulfadoxine-binding sites between the species differ by one residue, V585 in P. vivax, equivalent to A613 in P. falciparum. V585 in P. vivax is predicted by energy minimization to cause a reduction in binding of sulfadoxine to DHPS in P. vivax compared to P. falciparum. Sequencing dhps genes from a limited set of geographically different P. vivax isolates revealed that V585 was present in all of the samples, suggesting that V585 may be responsible for innate resistance of P. vivax to sulfadoxine. Additionally, amino acid mutations were observed in some P. vivax isolates in positions known to cause resistance in P. falciparum, suggesting that, as in P. falciparum, these mutations are responsible for acquired increases in resistance of P. vivax to sulfadoxine.
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- 2004
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25. pfcrt Allelic types with two novel amino acid mutations in chloroquine-resistant Plasmodium falciparum isolates from the Philippines.
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Chen N, Kyle DE, Pasay C, Fowler EV, Baker J, Peters JM, and Cheng Q
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- Alleles, Amino Acid Substitution, Animals, Antimalarials pharmacology, Calcium Channel Blockers pharmacology, Chloroquine pharmacology, Codon genetics, Drug Resistance, Genes, Protozoan genetics, Humans, Malaria, Falciparum parasitology, Membrane Transport Proteins, Philippines, Protozoan Proteins, RNA, Protozoan genetics, Reverse Transcriptase Polymerase Chain Reaction, Verapamil pharmacology, Amino Acids genetics, Membrane Proteins genetics, Mutation genetics, Plasmodium falciparum drug effects, Plasmodium falciparum genetics
- Abstract
Mutations in the pfcrt and pfmdr1 genes have been associated with chloroquine resistance in Plasmodium falciparum. Ten and five mutations, respectively, have been identified in these genes from chloroquine-resistant parasites worldwide. Mutation patterns in pfcrt revealed that chloroquine resistance evolved independently in southeast Asia, South America, and Papua New Guinea. However, the evolution of chloroquine resistance in the rest of the Pacific region is unclear. In this study, we examined sequence polymorphisms in these genes in isolates from Morong, Philippines, and compared them to known chloroquine resistance sequences. Two novel mutations, A144T and L160Y, were identified outside of the 10 known mutations in pfcrt in Morong isolates. These novel mutations were identified only in parasites with K76T and N326D but without the common A220S mutation found in most chloroquine-resistant isolates. This represents a unique chloroquine resistance allelic type (K76T/A144T/L160Y/N326D) not previously found elsewhere in the world. One Morong isolate also had an additional C72S mutation, whereas only one isolate possessed an allelic type typical of chloroquine resistance in Asia. Parasites with the novel pfcrt allelic types were resistant to chloroquine in vitro and were unresponsive to verapamil (0.9 microM) chemosensitization, similar to chloroquine-resistant parasites from South America and Papua New Guinea. These results suggest that chloroquine resistance evolved independently in the Philippines and represents a second chloroquine resistance founder event in the South Pacific.
- Published
- 2003
- Full Text
- View/download PDF
26. Therapeutic efficacies of artesunate-sulfadoxine-pyrimethamine and chloroquine-sulfadoxine-pyrimethamine in vivax malaria pilot studies: relationship to Plasmodium vivax dhfr mutations.
- Author
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Tjitra E, Baker J, Suprianto S, Cheng Q, and Anstey NM
- Subjects
- Adolescent, Adult, Animals, Artemisinins administration & dosage, Artesunate, Child, Child, Preschool, Chloroquine administration & dosage, Drug Combinations, Drug Therapy, Combination, Female, Humans, Infant, Male, Plasmodium vivax enzymology, Pyrimethamine administration & dosage, Sesquiterpenes administration & dosage, Sulfadoxine administration & dosage, Tetrahydrofolate Dehydrogenase genetics, Treatment Outcome, Artemisinins therapeutic use, Chloroquine therapeutic use, Malaria, Vivax drug therapy, Plasmodium vivax genetics, Pyrimethamine therapeutic use, Sesquiterpenes therapeutic use, Sulfadoxine therapeutic use
- Abstract
Artemisinin-derivative combination therapies (ACT) are highly efficacious against multidrug-resistant Plasmodium falciparum malaria. Few efficacy data, however, are available for vivax malaria. With high rates of chloroquine (CQ) resistance in both vivax and falciparum malaria in Papua Province, Indonesia, new combination therapies are required for both species. We recently found artesunate plus sulfadoxine-pyrimethamine (ART-SP) to be highly effective (96%) in the treatment of falciparum malaria in Papua Province. Following a preliminary study of CQ plus sulfadoxine-pyrimethamine (CQ-SP) for the treatment of Plasmodium vivax infection, we used modified World Health Organization criteria to evaluate the efficacy of ART-SP for the treatment of vivax malaria in Papua. Nineteen of 22 patients treated with ART-SP could be evaluated on day 28, with no early treatment failures. Adequate clinical and parasitological responses were found by day 14 in all 20 (100%) of the patients able to be evaluated and by day 28 in 17 patients (89.5%). Fever and parasite clearance times were short, with hematological improvement observed in 70.6% of the patients. Double (at positions 58 and 117) and quadruple (at positions 57, 58, 61, and 117) mutations in the P. vivax dihydrofolate reductase (PvDHFR) were common in Papuan P. vivax isolates (46 and 18%, respectively). Treatment failure with SP-containing regimens was significantly higher with isolates with this PvDHFR quadruple mutation, which included a novel T-->M mutation at residue 61 linked to an S-->T (but not an S-->N) mutation at residue 117. ART-SP ACT resulted in a high cure rate for both major Plasmodium species in Papua, though progression of DHFR mutations in both species due to the continued use of SP monotherapy for clinically diagnosed malaria threatens the future utility of this combination.
- Published
- 2002
- Full Text
- View/download PDF
27. Short report: Molecular evaluation of the efficacy of chloroquine treatment of uncomplicated Plasmodium falciparum malaria in East Timor.
- Author
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Chen N, Baker J, Ezard N, Burns M, Edstein MD, and Cheng Q
- Subjects
- Animals, Antigens, Protozoan genetics, Base Sequence, DNA Primers, Genotype, Humans, Indonesia, Merozoite Surface Protein 1 genetics, Plasmodium falciparum genetics, Protozoan Proteins genetics, Antimalarials therapeutic use, Chloroquine therapeutic use, Malaria, Falciparum drug therapy
- Abstract
The efficacy of chloroquine treatment of uncomplicated Plasmodium falciparum malaria in East Timor was investigated via molecular tools. Genotyping of the polymorphic markers msp1 and msp2 was performed to investigate the number and type of parasite alleles in pre- and posttreatment blood samples collected from 48 patients. Patients were infected with a minimum of 8 msp1 and 14 msp2 allelic types of parasite, and 43% of the patients had more than one allelic type before treatment. The genotyping also revealed that 66.7% of the patients were infected with at least one identical allelic type of parasite before and after treatment and therefore were likely to have experienced recrudescence. All parasites in pre- and posttreatment blood samples carried the K76T mutation in pfcrt, regardless of the clinical response to chloroquine. The sequence polymorphism patterns in pfcrt in the majority of parasites examined were identical to those observed in Bougainville, Papua New Guinea.
- Published
- 2002
- Full Text
- View/download PDF
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