Search

Recovering biodiversity across trophic levels is a major challenge in restoration ecology. Specifically, predator population recovery depends on the timely re-establishment of their preferred prey species in restored habitats. Here, we evaluate potential dietary factors contributing to the loss of western burrowing owls (Athene cunicularia hypugaea (Bonaparte, 1825)) from a newly-restored coastal grassland. We examined owl pellets and found that burrowing owl diets were relatively low in vertebrate prey during their brief occupation of the restoration site (2.6% of prey items; found in 61.8% of sampled pellets). We suggest that preferred food limitation may have been one contributor to the loss of owls from the restoration site. These findings suggest the need to prioritise re-establishment of prey communities for effective long-term recovery of burrowing owls in restored landscapes.

Humans are characterised as cooperative breeders, as not only the parents but also other members of the social group take part in raising offspring. The individuals who invest most in childrearing are usually the more closely related individuals. However, most studies have concentrated on close kin and the effects of more distant kin remain unknown. Here, we investigated the associations of child mortality (

ABSTRACT Functional traits offer an informative framework for understanding ecosystem functioning and responses to global change. Trait data are abundant in the literature, yet many communities of practice lack data standards for trait measurement and data sharing, hindering data reuse that could reveal large‐scale patterns in functional and evolutionary ecology. Here, we present a roadmap toward community data standards for trait‐based research on bees, including a protocol for effective trait data sharing. We also review the state of bee functional trait research, highlighting common measurement approaches and knowledge gaps. These studies were overwhelmingly situated in agroecosystems and focused predominantly on morphological and behavioral traits, while phenological and physiological traits were infrequently measured. Studies investigating climate change effects were also uncommon. Along with our review, we present an aggregated morphological trait dataset compiled from our focal studies, representing more than 1600 bee species globally and serving as a template for standardized bee trait data presentation. We highlight obstacles to harmonizing this trait data, especially ambiguity in trait classes, methodology, and sampling metadata. Our framework for trait data sharing leverages common data standards to resolve these ambiguities and ensure interoperability between datasets, promoting accessibility and usability of trait data to advance bee ecological research.

Habitat loss is a primary driver of global biodiversity decline, negatively impacting many species, including native bees. One approach to counteract the consequences of habitat loss is through restoration, which includes the transformation of degraded or damaged habitats to increase biodiversity. In this review, we survey bee habitat restoration literature over the last 14 years to provide insights into how best to promote bee diversity and abundance through the restoration of natural landscapes in North America. We highlight relevant questions and concepts to consider throughout the various stages of habitat restoration projects, categorizing them into pre-, during-, and post-restoration stages. We emphasize the importance of planning species- and site-specific strategies to support bees, including providing floral and non-floral resources and increasing nest site availability. Lastly, we underscore the significance of conducting evaluations and long-term monitoring following restoration efforts. By identifying effective restoration methods, success indicators, and areas for future research, our review presents a comprehensive framework that can guide land managers during this urgent time for bee habitat restoration.

Tens of millions of images from biological collections have become available online over the last two decades. In parallel, there has been a dramatic increase in the capabilities of image analysis technologies, especially those involving machine learning and computer vision. While image analysis has become mainstream in consumer applications, it is still used only on an artisanal basis in the biological collections community, largely because the image corpora are dispersed. Yet, there is massive untapped potential for novel applications and research if images of collection objects could be made accessible in a single corpus. In this paper, we make the case for infrastructure that could support image analysis of collection objects. We show that such infrastructure is entirely feasible and well worth investing in.

Abstract This contribution summarizes the current state of research regarding so‐called sensor‐integrating machine elements as an enabler of digitalization in mechanical engineering and——if available—their application in industry. The focus is on the methodical aspects of the development of these machine elements in general as well as specific sensor‐integrating machine elements that are either already in use or currently under development. Developmental aspects include the robust design of initially evaluated concepts for sensor‐integrating machine elements as well as their modularization. Smart materials with sensory functions are included in the analysis as well as the differentiation with regard to add‐on sensors. The aim of the authors interlinked by a special research program funded by the German Research Foundation (DFG) is to facilitate the exchange with other researchers with the help of the comprehensive overview given in this contribution. The contribution concludes with a brief discussion of open challenges, such as the energy supply and data transfer in rotating systems and also data security.

Abstract Chloride channel accessory 2 (CLCA2) is a transmembrane protein, which promotes adhesion of keratinocytes and their survival in response to hyperosmotic stress. Here we show that CLCA2 is transported to the nucleus of keratinocytes via extracellular vesicles. The nuclear localization is functionally relevant, since wild‐type CLCA2, but not a mutant lacking the nuclear localization signal, suppressed migration of keratinocytes and protected them from hyperosmotic stress‐induced cell death. In the nucleus, CLCA2 bound to and activated β‐catenin, resulting in enhanced expression of Wnt target genes. Mass‐spectrometry‐based interaction screening and functional rescue studies identified RNA binding protein 3 as a key effector of nuclear CLCA2. This is of likely relevance in vivo because both proteins co‐localize in the human epidermis. Together, these results identify an unexpected nuclear function of CLCA2 in keratinocytes under homeostatic and stress conditions and suggest a role of extracellular vesicles and their nuclear transport in the control of key cellular activities.

A quarter of Asian elephants are captive, with greater than 90% of these tamed and cared for by handlers (mahouts) in Asia. Although taming is a much-discussed welfare issue, no studies to our knowledge have empirically assessed its impact on calves, and dialogue surrounding taming often lacks perspectives of those involved. Here, we interviewed mahouts involved in taming and monitored five physiological measures (faecal glucocorticoid metabolites (FGMs), serum cortisol, glucose, creatine kinase (CK) and heterophil:lymphocyte (H:L)) over the first 10 days of taming and following six months in 41 calves undergoing taming and 16 control individuals. These measures assess the duration and intensity of stress during taming. Interviews suggested mahouts had major concerns for their safety when discussing changing taming practices, an important consideration for future management. Calf physiological measures were elevated by 50–70% (FGMs/cortisol/glucose), 135% (H:L) and greater than 500% (CK) over the first few days of taming, indicative of elevated stress, not seen to the same extent in control adults. Some measures stabilized sooner (glucose/cortisol/CK/FGM: 7–10 days) than others (H:L: one–two months), indicating mostly acute stress. Our findings inform the welfare of approximately 15 000 captive elephants around the world. Future studies should compare taming in different populations and consider calf and mahout welfare.

Abstract The relationship between orogens and crustal growth is a fundamental issue in the Earth sciences. Here we present Nd isotope mapping results of felsic and intermediate igneous rocks from eight representative and well-studied Phanerozoic orogens. The results illustrate the distribution of isotopic domains that reflect the compositional architecture of the orogens. We calculated the areal proportion of juvenile crust and divided the orogens into five types: (i) highly juvenile (with >70% juvenile crust); (ii) moderately juvenile (70–50%; e.g., the Altaids with ~58% and the North American Cordillera with ~54%); (iii) mixed juvenile and reworked (50–30%; e.g., the Newfoundland Appalachians with ~40% and the Lachlan Orogen with ~31%); (iv) reworked (30–10%); (v) highly reworked (

A form of mobile lithosphere with mantle recycling was already operating on the Early Earth around 4.4 to 3.3 billion years ago, according to the application of machine learning to differentiate the source lithologies of zircons from Jack Hills Australia

The documentation, preservation and rescue of biological diversity increasingly uses living biological samples. Persistent associations between species, biosamples, such as tissues and cell lines, and the accompanying data are indispensable for using, exchanging and benefiting from these valuable materials. Explicit authentication of such biosamples by assigning unique and robust identifiers is therefore required to allow for unambiguous referencing, avoid identification conflicts and maintain reproducibility in research. A predefined nomenclature based on uniform rules would facilitate this process. However, such a nomenclature is currently lacking for animal biological material. We here present a first, standardized, human-readable nomenclature design, which is sufficient to generate unique and stable identifying names for animal cellular material with a focus on wildlife species. A species-specific human- and machine-readable syntax is included in the proposed standard naming scheme, allowing for the traceability of donated material and cultured cells, as well as data FAIRification. Only when it is consistently applied in the public domain, as publications and inter-institutional samples and data are exchanged, distributed and stored centrally, can the risks of misidentification and loss of traceability be mitigated. This innovative globally applicable identification system provides a standard for a sustainable structure for the long-term storage of animal bio-samples in cryobanks and hence facilitates current as well as future species conservation and biomedical research.

Abstract The acute phase response (APR) is an evolutionarily well-conserved part of the innate immune defense against pathogens. However, recent studies in bats yielded surprisingly diverse results compared to previous APR studies on both vertebrate and invertebrate species. This is especially interesting due to the known role of bats as reservoirs for viruses and other intracellular pathogens, while being susceptible to extracellular microorganisms such as some bacteria and fungi. To better understand these discrepancies and the reservoir-competence of bats, we mimicked bacterial, viral and fungal infections in greater mouse-eared bats (Myotis myotis) and quantified different aspects of the APR over a two-day period. Individuals reacted most strongly to a viral (PolyI:C) and a bacterial (LPS) antigen, reflected by an increase of haptoglobin levels (LPS) and an increase of the neutrophil-to-lymphocyte-ratio (PolyI:C and LPS). We did not detect fever, leukocytosis, body mass loss, or a change in the overall functioning of the innate immunity upon challenge with any antigen. We add evidence that bats respond selectively with APR to specific pathogens and that the activation of different parts of the immune system is species-specific.

Science communication, as the communication in which science and society enter into an exchange with each other about scientific problems, is becoming more and more important. In contrast to scholarly communication, where science communicates within scientific communities (science-to-science), science communication uses other mechanisms, platforms and communication methods (science-to-public and public-to-science). Due to social media, the barrier for direct exchange and entry into science communication has become lower and lower for scholars. However, certain methodological, technical and social competencies are needed not only to initiate this exchange, but also to actively enter into it and accompany it. So far, these competences have rarely been part of academic training and have not been recorded and presented in a structured way. With a focus on independent digital science communication, i. e. researchers creating their own digital communication formats, a corresponding reference framework will be developed in this working paper.

We improve by a factor of 4–20 the energy accuracy of the strongest soft X-ray transitions of Fe xvii ions by resonantly exciting them in an electron beam ion trap with a monochromatic beam at the P04 beamline of the PETRA III synchrotron facility. By simultaneously tracking instantaneous photon-energy fluctuations with a high-resolution photoelectron spectrometer, we minimize systematic uncertainties down to 10–15 meV, or velocity equivalent ±∼5 km s ^−1 in their rest energies, substantially improving our knowledge of this key astrophysical ion. Our large-scale configuration-interaction computations include more than 4 million relativistic configurations and agree with the experiment at a level without precedent for a 10-electron system. Thereby, theoretical uncertainties for interelectronic correlations become far smaller than those of quantum electrodynamics (QED) corrections. The present QED benchmark strengthens our trust in future calculations of many other complex atomic ions of interest to astrophysics, plasma physics, and the development of optical clocks with highly charged ions.

The European Bank for induced pluripotent Stem Cells (EBiSC) was established in 2014 as a non-profit project for the banking, quality control, and distribution of human iPSC lines for research around the world. EBiSC iPSCs are deposited from diverse laboratories internationally and, hence, a key activity for EBiSC is standardising not only the iPSC lines themselves but also the data associated with them. This includes enabling unique nomenclature for the cells, as well as applying uniformity to the data provided by the cell line generator versus quality control data generated by EBiSC, and providing mechanisms to share personal data in a secure and GDPR-compliant manner. A joint approach implemented by EBiSC and the human pluripotent stem cell registry (hPSCreg®) has provided a solution that enabled hPSCreg® to improve its registration platform for iPSCs and EBiSC to have a pipeline for the import, standardisation, storage, and management of data associated with EBiSC iPSCs. In this work, we describe the experience of cell line data management for iPSC banking throughout the course of EBiSC’s development as a central European banking infrastructure and present a model for how this could be implemented by other iPSC repositories to increase the FAIRness of iPSC research globally.

Abstract Phenotypic divergence is an important consequence of restricted gene flow in insular populations. This divergence can be challenging to detect when it occurs through subtle shifts in morphological traits, particularly in traits with complex geometries, like insect wing venation. Here, we employed geometric morphometrics to assess the extent of variation in wing venation patterns across reproductively isolated populations of the social sweat bee, Halictus tripartitus. We examined wing morphology of specimens sampled from a reproductively isolated population of H. tripartitus on Santa Cruz Island (Channel Islands, Southern California). Our analysis revealed significant differentiation in wing venation in this island population relative to conspecific mainland populations. We additionally found that this population‐level variation was less pronounced than the species‐level variation in wing venation among three sympatric congeners native to the region, Halictus tripartitus, Halictus ligatus, and Halictus farinosus. Together, these results provide evidence for subtle phenotypic divergence in an island bee population. More broadly, these results emphasize the utility and potential of wing morphometrics for large‐scale assessment of insect population structure.

Teleasinae are commonly collected scelionids that are the only known egg parasitoids of carabid beetles and therefore play a crucial role in shaping carabid populations in natural and agricultural ecosystems. We review the available host information of Teleasinae, report a new host record, and revise Gryonoides Dodd, 1920, a morphologically distinct teleasine genus. We review the generic concept of Gryonoides and provide diagnoses and descriptions of thirteen Gryonoides species and two varieties: G. glabriceps Dodd, 1920, G. pulchellus Dodd, 1920 (= G. doddi Ogloblin, 1967, syn. nov. and G. pulchricornis Ogloblin, 1967, syn. nov.), G. brasiliensis Masner & Mikó, sp. nov., G. flaviclavus Masner & Mikó, sp. nov., G. fuscoclavatus Masner & Mikó, sp. nov., G. garciai Masner & Mikó, sp. nov., G. mexicali Masner & Mikó, sp. nov., G. mirabilicornis Masner & Mikó, sp. nov., G. obtusus Masner & Mikó, sp. nov., G. paraguayensis Masner & Mikó, sp. nov., G. rugosus Masner & Mikó, sp. nov., G. uruguayensis Masner & Mikó, sp. nov. We treat Gryonoides scutellaris Dodd, 1920, as status uncertain. Gryonoides mirabilicornis Masner & Mikó, sp. nov. is the only known teleasine with tyloids on two consecutive flagellomeres, a well-known trait of Sparasionidae. An illustrated identification key to species of Gryonoides, a queryable semantic representation of species descriptions using PhenoScript, and a simple approach for making Darwin Core Archive files in taxonomic revisions accessible are provided.

Abstract Working animals spend hours each day in close contact with humans and require training to understand commands and fulfil specific tasks. However, factors driving cooperation between humans and animals are still unclear, and novel situations may present challenges that have been little-studied to-date. We investigated factors driving cooperation between humans and animals in a working context through behavioural experiments with 52 working semi-captive Asian elephants. Human-managed Asian elephants constitute approximately a third of the remaining Asian elephants in the world, the majority of which live in their range countries working alongside traditional handlers. We investigated how the familiarity and experience of the handler as well as the elephant’s age and sex affected their responses when asked to perform a basic task and to cross a novel surface. The results highlighted that when novelty is involved in a working context, an elephant’s relationship length with their handler can affect their cooperation: elephants who had worked with their handler for over a year were more willing to cross the novel surface than those who had a shorter relationship with their handler. Older animals also tended to refuse to walk on the novel surface more but the sex did not affect their responses. Our study contributes much needed knowledge on human-working animal relationships which should be considered when adjusting training methods and working habits.

Abstract Background Knowledge about parasitic infections is crucial information for animal health, particularly of free-ranging species that might come into contact with livestock and humans. Methods We investigated the seroprevalence of three tissue-cyst-forming apicomplexan parasites (Toxoplasma gondii, Neospora caninum and Besnoitia besnoiti) in 506 individuals of 12 wildlife species in Namibia using in-house enzyme linked immunosorbent assays (indirect ELISAs applying purified antigens) for screening and immunoblots as confirmatory tests. We included six species of the suborder Feliformia, four species of the suborder Caniformia and two species of the suborder Ruminantia. For the two species for which we had most samples and life-history information, i.e. cheetahs (Acinonyx jubatus, n = 250) and leopards (Panthera pardus, n = 58), we investigated T. gondii seroprevalence in relation to age class, sex, sociality (solitary, mother-offspring group, independent sibling group, coalition group) and site (natural habitat vs farmland). Results All but one carnivore species (bat-eared fox Otocyon megalotis, n = 4) were seropositive to T. gondii, with a seroprevalence ranging from 52.4% (131/250) in cheetahs to 93.2% (55/59) in African lions (Panthera leo). We also detected antibodies to T. gondii in 10.0% (2/20) of blue wildebeest (Connochaetes taurinus). Adult cheetahs and leopards were more likely to be seropositive to T. gondii than subadult conspecifics, whereas seroprevalence did not vary with sex, sociality and site. Furthermore, we measured antibodies to N. caninum in 15.4% (2/13) of brown hyenas (Hyaena brunnea) and 2.6% (1/39) of black-backed jackals (Canis mesomelas). Antibodies to B. besnoiti were detected in 3.4% (2/59) of African lions and 20.0% (4/20) of blue wildebeest. Conclusions Our results demonstrate that Namibian wildlife species were exposed to apicomplexan parasites at different prevalences, depending on parasite and host species. In addition to serological work, molecular work is also needed to better understand the sylvatic cycle and the clear role of wildlife in the epidemiology of these parasites in southern Africa.

[This corrects the article DOI: 10.1371/journal.pone.0245170.].

The area of the Inner Asian Mountain Corridor (IAMC) follows the foothills and piedmont zones around the northern limits of Asia's interior mountains, connecting two important areas for human evolution: the Fergana valley and the Siberian Altai. Prior research has suggested the IAMC may have provided an area of connected refugia from harsh climates during the Pleistocene. To date, this region contains very few secure, dateable Pleistocene sites, but its widely available carbonate units present an opportunity for discovering cave sites, which generally preserve longer sequences and organic remains. Here we present two models for predicting karstic cave and rockshelter features in the Kazakh portion of the IAMC. The 2018 model used a combination of lithological data and unsupervised landform classification, while the 2019 model used feature locations from the results of our 2017-2018 field surveys in a supervised classification using a minimum-distance classifier and morphometric features derived from the ASTER digital elevation model (DEM). We present the results of two seasons of survey using two iterations of the karstic cave models (2018 and 2019), and evaluate their performance during survey. In total, we identified 105 cave and rockshelter features from 2017-2019. We conclude that this model-led approach significantly reduces the target area for foot survey.

The value of human pluripotent stem cells (hPSC) in regenerative medicine has yet to reach its full potential. The road from basic research tool to clinically validated PSC-derived cell therapy products is a long and winding one, leading researchers, clinicians, industry and regulators alike into undiscovered territory. All stakeholders must work together to ensure the development of safe and effective cell therapies. Similarly, utilization of hPSC in meaningful and controlled disease modeling and drug screening applications requires information on the quality and suitability of the applied cell lines. Central to these common goals is the complete documentation of hPSC data, including the ethical provenance of the source material, the hPSC line derivation, culture conditions and genetic constitution of the lines. Data surrounding hPSC is scattered amongst diverse sources, including publications, supplemental data, researcher lab books, accredited lab reports, certificates of analyses and public data repositories. Not all of these data sources are publicly accessible nor associated with metadata nor stored in a standard manner, such that data can be easily found and retrieved. The Human Pluripotent Stem Cell Registry (hPSCreg; https://hpscreg.eu/) was started in 2007 to impart provenance and transparency towards hPSC research by registering and collecting standard properties of hPSC lines. In this chapter, we present a short primer on the history of stem cell-based products, summarize the ethical and regulatory issues introduced in the course of working with hPSC-derived products and their associated data, and finally present the Human Pluripotent Stem Cell Registry as a valuable resource for all stakeholders in therapies and disease modeling based on hPSC-derived cells.

Georeferencing is the process of aligning a text description of a geographic location with a spatial location based on a geographic coordinate system. Training aids are commonly created around the georeferencing process to disseminate community standards and ideas, guide accurate georeferencing, inform users about new tools, and help users evaluate existing geospatial data. The Georeferencing for Research Use (GRU) workshop was implemented as a training aid that focused on the creation and research use of geospatial coordinates, and included both data researchers and data providers, to facilitate communication between the groups. The workshop included 23 participants with a wide background of expertise ranging from students (undergraduate and graduate), professors, researchers and educators, scientific data managers, natural history collections personnel, and spatial analyst specialists. The conversations and survey results from this workshop demonstrate that it is important to provide opportunities for biocollections data providers to interact directly with the researchers using the data they produce and vice versa.

Exploring the photoionization process leads to better understanding of the fundamental interactions between light and matter. Here the authors show the non-dipole contribution in the form of asymmetric photoelectron angular distribution from the ionization of argon atoms and ions.

Summary: The human pluripotent stem cell (hPSC) research landscape is rapidly evolving. To assess possible novel trends in hPSC usage, we analyzed experimental hPSC research published from 2014 to 2016 and compared our data with those of earlier periods. The number of papers describing experimental work involving hPSCs increased further with clear differences in the scientific impact of publications from different countries. Our results confirm the leading position of US-based hPSC research, although to a lesser degree than observed previously. Our data reveal that research into human induced pluripotent stem cells alone surpassed human embryonic stem cell (hESC) research by 2015 and rapidly grew after that. We also report on continuing and even slightly growing research activities in the hESC field as well as on a generally declining rate of the generation of new hESC lines. An increasing portion of new hESC lines represents disease-specific and clinical-grade cell lines. The previously noted usage of only a few early established hESC lines in the vast majority of scientific work is sustained. We also provide a comprehensive overview on clinical trials on the basis of hPSCs. We find that the vast majority of those trials are based on hESC-derived cell products that were generated from an only limited number of relatively old cell lines. : Guhr et al. show that there are marked differences in the impact of recent hPSC research from different countries. The hESC line usage patterns remained mainly unchanged. The authors provide a comprehensive overview on clinical trials involving hPSC-derived cell products and find that these trials are mainly based on hESCs. Keywords: human pluripotent stem cells, human embryonic stem cells, human induced pluripotent stem cells, research, impact, citation frequencies, hESC lines, clinical trials

Across Europe, small scale deposits of critical materials and/or strategic elements, such as W, Li and Sn, are not viable to mine and process using the traditional large scale mining and processing technologies due to their geological characteristics. Project FAME (Flexible And Mobile Economic Processing Technologies, EC Horizon 2020 Grant Agreement No. 641650) was created in order to specifically address the technical and environmental challenges to the sustainable processing of low sulphide ores from pegmatites, greisens and skarns deposits. One of the deposits, Alvarrões-Gonçalo, is a Li pegmatite located at the Gonçalo pegmatite field (Central Portugal) that is being investigated on the scope of the concerned project. Currently, the pegmatites are only being exploited for ceramics, aggregates and ornamental purposes, however, there is exploitation potential for Li2O-rich ores. Froth flotation is being tested to produce a lepidolite concentrate. Results showed the feasibility to obtain a Li2O grade adequate for the metallurgical production of lithium compounds as Li2CO3. The lepidolite flotation rejects, normally stored in tailings dumps, are mainly composed by a mixture of feldspars, quartz and non-recovered lepidolite (though a very low content), which is, by itself, a very interesting raw material for ceramic purposes. Consequently, mining exploitation of lepidolite, as Li2O ore, from pegmatite could comply with the standards of green mining, reaching an almost zero waste exploitation, as it can be accomplished in the case of the mineral processing of the Alvarrões-Gonçalo lithium ore. This basic scenario could be improved by applying froth flotation also for feldspars/quartz separation, aiming at obtaining a high content feldspars concentrate (floated) and a quartz product (non-floated): the feldspars concentrate can be used to produce blends with different ratios feldspars/quartz for sanitary ware and tiles and quartz for other uses, such as glasses and silica flour.

Unambiguous cell line authentication is essential to avoid loss of association between data and cells. The risk for loss of references increases with the rapidity that new human pluripotent stem cell (hPSC) lines are generated, exchanged, and implemented. Ideally, a single name should be used as a generally applied reference for each cell line to access and unify cell-related information across publications, cell banks, cell registries, and databases and to ensure scientific reproducibility. We discuss the needs and requirements for such a unique identifier and implement a standard nomenclature for hPSCs, which can be automatically generated and registered by the human pluripotent stem cell registry (hPSCreg). To avoid ambiguities in PSC-line referencing, we strongly urge publishers to demand registration and use of the standard name when publishing research based on hPSC lines.

Abstract The frequent ACE insertion/deletion polymorphism (I/D) is, albeit inconsistently, associated with impaired glucose tolerance and insulin resistance. We recently observed an enhanced upregulation of ACE by elevated fat intake in GG-carriers of the I/D-surrogate rs4343 variant and therefore investigated its potential nutrigenetic role in glucose metabolism. In this nutritional intervention study 46 healthy and non-obese twin pairs consumed recommended low fat diets for 6 weeks before they received a 6-week high fat (HF) diet under isocaloric conditions. Intravenous glucose tolerance tests were performed before and after 1 and 6 weeks of HF diet. While glucose tolerance did not differ between genotypes at baseline it significantly declined in GG-carriers after 6 weeks HF diet (p = 0.001) with higher 2 h glucose and insulin concentrations compared to AA/AG-carriers (p = 0.003 and p = 0.042). Furthermore, the gene-diet interaction was confirmed in the cross-sectional Metabolic Syndrome Berlin Potsdam study (p = 0.012), with the GG-genotypes being significantly associated with prevalent type 2 diabetes for participants with high dietary fat intake ≥37% (GG vs. AA/AG, OR 2.36 [1.02–5.49], p = 0.045). In conclusion, the association between the rs4343 variant and glucose tolerance is modulated by dietary fat intake. The ACE rs4343 variant is a novel nutrient-sensitive type 2 diabetes risk marker potentially applicable for nutrigenetic dietary counseling.

A fast track “Hot Start” process was implemented to launch the European Bank for Induced Pluripotent Stem Cells (EBiSC) to provide early release of a range of established control and disease linked human induced pluripotent stem cell (hiPSC) lines. Established practice amongst consortium members was surveyed to arrive at harmonised and publically accessible Standard Operations Procedures (SOPs) for tissue procurement, bio-sample tracking, iPSC expansion, cryopreservation, qualification and distribution to the research community. These were implemented to create a quality managed foundational collection of lines and associated data made available for distribution. Here we report on the successful outcome of this experience and work flow for banking and facilitating access to an otherwise disparate European resource, with lessons to benefit the international research community. eTOC: The report focuses on the EBiSC experience of rapidly establishing an operational capacity to procure, bank and distribute a foundational collection of established hiPSC lines. It validates the feasibility and defines the challenges of harnessing and integrating the capability and productivity of centres across Europe using commonly available resources currently in the field.

For group-living animals it is essential to maintain the cohesiveness of the group when traveling. Individuals have to make an accurate decision about where and when to move. Communication before and during the departure of the first individual may play a crucial role in synchronizing a collective movement. We hypothesized that individuals in a wild primate group use signals or cues prior to and after departure to achieve collective movements. With two observers we used all-occurrences behavior sampling of collective movements in a group of wild Barbary macaques (Macaca sylvanus) in the Middle Atlas, Morocco. The number of individuals displaying pre-departure behavior predicted the success of an initiation of a collective movement. Pauses of the first departing individual after departure enhanced following behavior and might have served as recruitment signal. However, the opposite was the case for back-glancing, which functions as a monitoring signal in other species. Because in our study frequently back-glancing individuals were also less socially integrated, back glances may better be interpreted as indicators of hesitation and insecurity. To successfully initiate a collective movement, it seemed to be sufficient for a socially integrated group member to take action when other group members signal their willingness prior to departure and to occasionally wait for the group while moving.

The current extinction crisis leaves us increasingly reliant on captive populations to maintain vulnerable species. Approximately one third of Asian elephants (Elephas maximus) are living in semi-captive conditions in range countries. Their relationship with humans stretches back millennia, yet elephants have never been fully domesticated. We rely on the expertise of traditional handlers (mahouts) to manage these essentially wild animals, yet this profession may be threatened in the modern day. Here, we study the handling system of semi-captive timber elephants in Myanmar; the largest global semi-captive population (~5 000). We investigate how recent changes in Myanmar may have affected the keeping system and mahout-elephant interactions. Structured interviews investigated changes to mahout attitude and experience over the last two decades, as perceived by those who had worked in the industry for at least 10 years (n = 23) and as evaluated in current mahouts (n = 210), finding mahouts today are younger (median age 22yrs), less experienced (median experience 3yrs), and change elephants frequently, threatening traditional knowledge transfer. Mahout-elephant interactions manifested as 5 components ('job appreciation'; 'experience is necessary'; 'human-elephant interaction'; 'own knowledge'; 'elephant relationship'), according to Principal Components Analysis. Experienced mahouts and mahouts of bulls and younger elephants were more likely to agree that 'experience is necessary' to be a mahout. Mahouts with difficult elephants scored lower on 'human-elephant interaction' and a mahout's perception of their 'own knowledge' increased with more experience. Our finding of change in terms of mahout experience, age and commitment in the largest semi-captive elephant population suggests need for formal training and assessment of impacts on elephant welfare; these are findings applicable to thousands of elephants under similar management.

Data on personality for long-lived, highly social wild mammals with high cognitive abilities are rare. We investigated the personality structure of Asian elephants (Elephas maximus) by using a large sample of semi-captive timber elephants in Myanmar. Data were collected during 2014–2017 using questionnaires, for which elephant riders (mahouts) rated 28 behavioural adjectives of elephants. Repeated questionnaires were obtained for each elephant from several raters whenever possible, resulting in 690 ratings of 150 female and 107 male elephants. We started by performing a confirmatory factor analysis to compare the fit of our data to a previously published captive elephant personality structure. Owing to a poor fit of this model to our data, we proceeded by performing explanatory factor analysis to determine the personality structure in our study population. This model suggested that personality in these elephants was manifested as three factors that we labelled as Attentiveness, Sociability and Aggressiveness. This structure did not differ between the sexes. These results provide the basis for future research on the link between personality and reproductive success in this endangered species and more generally, help to resolve the selective pressures on personalities in long-lived, highly social species.

Animals are kept in captivity for various reasons, but species with a slower pace of life may adapt to captive environments less easily, leading to welfare concerns and the need to assess stress reliably in order to develop effective interventions. Our aim was to assess welfare of semi-captive timber elephants from Myanmar by investigating the relationship between two physiological markers of stress commonly used as proxies for welfare, faecal glucocorticoid metabolite concentrations (FGM) and heterophil/lymphocyte ratios (H/L), and link these measures to changes in body condition (determined by body weight). We further assessed how robustly these two markers of stress performed in animals of different age or sex, or in different ecological contexts. We measured FGM concentrations and H/L ratios between 2016 and 2018 from 316 samples of 75 females and 49 males ranging in age from 4 to 68. We found a positive and consistent link between FGMs and H/L ratios in Asian elephants, irrespective of their sex, age, or ecological context. Our results will help to inform managers of (semi-) captive elephants about using heterophil/lymphocyte ratio data from blood smears on site as a potentially cheaper and faster alternative to determining stress than measuring faecal glucocorticoid metabolite concentrations in the laboratory.

Recognising stress is an important component in maintaining the welfare of captive animal populations, and behavioural observation provides a rapid and non-invasive method to do this. Despite substantial testing in zoo elephants, there has been relatively little interest in the application of behavioural assessments to the much larger working populations of Asian elephants across Southeast Asia, which are managed by workers possessing a broad range of behavioural knowledge. Here, we developed a new ethogram of potential stress- and work-related behaviour for a semi-captive population of Asian elephants. We then used this to collect observations from video footage of over 100 elephants and evaluated the reliability of behavioural welfare assessments carried out by non-specialist observers. From observations carried out by different raters with no prior experience of elephant research or management, we tested the reliability of observations between-observers, to assess the general inter-observer agreement, and within-observers, to assess the consistency in behaviour identification. The majority of ethogram behaviours were highly reliable both between- and within-observers, suggesting that overall, behaviour was highly objective and could represent easily recognisable markers for behavioural assessments. Finally, we analysed the repeatability of individual elephant behaviour across behavioural contexts, demonstrating the importance of incorporating a personality element in welfare assessments. Our findings highlight the potential of non-expert observers to contribute to the reliable monitoring of Asian elephant welfare across large captive working populations, which may help to both improve elephant wellbeing and safeguard human workers.

Encyclopedia of Life (EOL) is a resource for community-driven biodiversity data, focusing on species information and images. Research into blue flowers to compare color ('blueness') at different elevations revealed that data content providers describe flowers as blue for any color hue in the range from blue to magenta. We propose methods for standardizing color values and color searching within EOL by means of an expanded color vocabulary and improved access to image metadata, in order to improve the research capacity of this valuable resource.

Hymenopterans have evolved a rich array of morphological diversity within the maxillo-labial complex. Although the character system has been extensively studied and its phylogenetic implications revealed in large hymenopterans, e.g. in Aculeata, it remains comparatively understudied in parasitoid wasps. Reductions of character systems due to the small body size in microhymenoptera make it difficult to establish homology and limits the interoperability of morphological data. We describe here the maxillo-labial complex of an ancestral platygastroid lineage, Sparasion, and provide an ontology-based model of the anatomical concepts related to the maxillo-labial complex (MLC) of Hymenoptera. The possible functions and putative evolutionary relevance of some anatomical structures of the MLC in Sparasion are discussed. Anatomical structures are visualized with Confocal Laser Scanning Microscopy.

Free electron lasers emit powerful and coherent radiation in a wide wavelength range extending to hard x-rays. This radiation is also characterized by a high degree of polarization that is generally linear and depends on the undulator properties. The possibility of controlling the polarization state of the radiation is an important option for free electron lasers that is critical for a large class of experiments. Such control can be achieved using variable polarization undulators or alternatively via the crossed polarized undulator scheme. We report the results of an extensive study for the characterization of the crossed-polarized undulator scheme in a number of different configurations. A simple model, based on Gaussian mode beam propagation, is presented and used to reproduce the experimental results obtained at the seeded free electron laser FERMI. A good agreement is found between the model and the experiment allowing us to understand the impact of the wavefront properties of the radiation coming from the consecutive undulators on the output radiation. The model is used not only for characterizing the control of the polarization but also for the control of the transverse mode.

As part of the European Conference on Behavioral Biology 2018, we organized a symposium entitled, “Animal personality: providing new insights into behavior?„ The aims of this symposium were to address current research in the personality field, spanning both behavioral ecology and psychology, to highlight the future directions for this research, and to consider whether differential approaches to studying behavior contribute something new to the understanding of animal behavior. In this paper, we discuss the study of endocrinology and ontogeny in understanding how behavioral variation is generated and maintained, despite selection pressures assumed to reduce this variation. We consider the potential mechanisms that could link certain traits to fitness outcomes through longevity and cognition. We also address the role of individual differences in stress coping, mortality, and health risk, and how the study of these relationships could be applied to improve animal welfare. From the insights provided by these topics, we assert that studying individual differences through the lens of personality has provided new directions in behavioral research, and we encourage further research in these directions, across this interdisciplinary field.

Insects are possibly the most taxonomically and ecologically diverse class of multicellular organisms on Earth. Consequently, they provide nearly unlimited opportunities to develop and test ecological and evolutionary hypotheses. Currently, however, large-scale studies of insect ecology, behavior, and trait evolution are impeded by the difficulty in obtaining and analyzing data derived from natural history observations of insects. These data are typically highly heterogeneous and widely scattered among many sources, which makes developing robust information systems to aggregate and disseminate them a significant challenge. As a step towards this goal, we report initial results of a new effort to develop a standardized vocabulary and ontology for insect natural history data. In particular, we describe a new database of representative insect natural history data derived from multiple sources (but focused on data from specimens in biological collections), an analysis of the abstract conceptual areas required for a comprehensive ontology of insect natural history data, and a database of use cases and competency questions to guide the development of data systems for insect natural history data. We also discuss data modeling and technology-related challenges that must be overcome to implement robust integration of insect natural history data.

BackgroundAngiotensin‐converting enzyme (ACE) plays a major role in blood pressure regulation and cardiovascular homeostasis. Contrary to the assumption that ACE levels are stable, circulating ACE has been shown to be altered in obesity and weight loss. We sought to examine effects of a high‐saturated‐fat (HF) diet on ACE within the NUtriGenomic Analysis in Twins (NUGAT) study. Methods and ResultsForty‐six healthy and nonobese twin pairs initially consumed a carbohydrate‐rich, low‐fat diet over a period of 6 weeks to standardize for nutritional behavior prior to the study, followed by 6 weeks of HF diet under isocaloric conditions. After 6 weeks of HF diet, circulating ACE concentrations increased by 15% (P=1.6×10−30), accompanied by an increased ACE gene expression in adipose tissue (P=3.8×10−6). Stratification by ACE rs4343, a proxy for the ACE insertion/deletion polymorphism (I/D), revealed that homozygous carriers (GG) of the variant had higher baseline ACE concentrations (P=7.5×10−8) and additionally showed a 2‐fold increase in ACE concentrations in response to the HF diet as compared to non‐ or heterozygous carriers (AA/AG, P=2×10−6). GG carriers also responded with higher systolic blood pressure as compared to AA/AG carriers (P=0.008). The strong gene‐diet interaction was confirmed in a second independent, cross‐sectional cohort, the Metabolic Syndrome Berlin Potsdam (MeSyBePo) study. ConclusionsThe HF‐diet‐induced increase of ACE serum concentrations reveals ACE to be a potential molecular link between dietary fat intake and hypertension and cardiovascular disease (CVD). The GG genotype of the ACE rs4343 polymorphism represents a robust nutrigenetic marker for an unfavorable response to high‐saturated‐fat diets. Clinical Trial RegistrationURL: http://www.clinicaltrials.gov. Unique identifier: NCT01631123.

Melatonin is a key hormone in the regulation of circadian rhythms of vertebrates, including songbirds. Understanding diurnal melatonin fluctuations and being able to reverse or simulate natural melatonin levels are critical to investigating the influence of melatonin on various behaviors such as singing in birds. Here we give a detailed overview of natural fluctuations in plasma melatonin concentration throughout the night in the zebra finch. As shown in previous studies, we confirm that “lights off” initiates melatonin production at night in a natural situation. Notably, we find that melatonin levels return to daytime levels as early as two hours prior to the end of the dark-phase in some individuals and 30 min before “lights on” in all animals, suggesting that the presence of light in the morning is not essential for cessation of melatonin production in zebra finches. Thus, the duration of melatonin production seems not to be specified by the length of night and might therefore be less likely to directly couple circadian and annual rhythms. Additionally, we show that natural melatonin levels can be successfully simulated through a combination of light-treatment (daytime levels during subjective night) and the application of melatonin containing skin-cream (nighttime levels during subjective day). Moreover, natural levels and their fluctuation in the transition from day to night can be imitated, enabling the decoupling of the effects of melatonin, for example on neuronal activity, from sleep and circadian rhythmicity. Taken together, our high-resolution profile of natural melatonin levels and manipulation techniques open up new possibilities to answer various melatonin related questions in songbirds.

First results of radar derived climatology have emerged over the last years, as datasets of appropriate extent are becoming available. Usually, these statistics are based on time series lasting up to ten years as continuous storage of radar data was often not achieved before. This kind of climatology demands a high level of data quality. Small deviations or minor systematic under- or overestimations in single radar images become a major cause of error in statistical analysis. Extensive corrections of radar data are a crucial prerequisite for radar derived climatology. We present a new statistical post-correction scheme based on a climatological analysis of seven years of radar data of the Munich weather radar (2000–2006) operated by DWD (German Weather Service). Original radar products are used subject only to corrections within the signal processor without any further corrections on single radar images. The aim of this statistical correction is to make up for the average systematic errors caused by clutter, propagation, or measuring effects but to conserve small-scale natural variations in space. The statistical correction is based on a thorough analysis of the different causes of possible errors for the Munich weather radar. This analysis revealed the following basic effects: the decrease of rain amount as a function of height and distance from the radar, clutter effects such as clutter remnants after filtering, holes by eliminated clutter or shading effects from obstacles near the radar, visible as spokes, as well as the influence of the bright band. The correction algorithm is correspondingly based on these results. It consists of three modules. The first one is an altitude correction which minimises measuring effects. The second module corrects clutter effects and disturbances and the third one realises a mean adjustment to selected rain gauges. Two different sets of radar products are used. The statistical analysis as well as module 1 and module 2 of the correction algorithm are based on frequencies of the six reflectivity levels within the so-called PX product. For correction module 3 and for the validation of the correction algorithm, rain amounts are calculated from the 8-bit so-called DX product. The correction algorithm is created to post-correct climatological or statistical analysis of radar data with a temporal resolution larger than one year. The correction algorithm is used for frequencies of occurrence of radar reflectivities which enables its application even for radar products such as DWD's cell-tracking-product CONRAD. Application (2004–2006) and validation (2007–2009) periods of this correction algorithm with rain gauges show an increased conformity for radar climatology after the statistical correction. In the years 2004 to 2006 the Root-Mean-Square-Error (RMSE) between mean annual rain amounts of rain gauges and corresponding radar pixels decreases from 262 mm to 118 mm excluding those pairs of values where the rain gauges are situated in areas of obviously corrupted radar data. The results for the validation period 2007 to 2009 are based on all pairs of values and show a decline of the RMSE from 322 mm to 174 mm.

Measuring rain rates over complex terrain is afflicted with large uncertainties, because rain gauges are influenced by orography and weather radars are mostly not able to look into mountain valleys. We apply a new method to estimate near surface rain rates exploiting attenuation data from commercial microwave links in the alpine region of Southern Germany. Received signal level (RSL) data are recorded minutely with small data loggers at the towers and then sent to a database server via GSM (Global System for Mobile Communications). Due to the large RSL fluctuations in periods without rain, the determination of attenuation caused by precipitation is not straightforward. To be able to continuously process the RSL data from July 2010 to October 2010, we introduce a new method to detect wet and dry periods using spectral time series analysis. Its performance and limitations are presented, showing that the mean detection error rates of wet and dry periods can be reduced to 10% for all five links. After, the wet/dry classification rain rates are derived from the RSL and compared to rain gauge and weather radar measurements. The resulting correlations differ for different links and reach values of R2 = 0.81 for the link-gauge comparison and R2 = 0.85 for the link-radar comparison.

Pinned insect specimens stored in museum collections are a fragile and valuable resource for entomological research. As such, they are usually kept away from viewing by the public and hard to access by experts. Here we present a method for mass imaging insect specimens, using GigaPan technology to achieve highly explorable, many-megapixel panoramas of insect museum drawers. We discuss the advantages and limitations of the system, and describe future avenues of collections research using this technology.

Hymenoptera exhibit an incredible diversity of phenotypes, the result of ~240 million years of evolution and the primary subject of more than 250 years of research. Here we describe the history, development, and utility of the Hymenoptera Anatomy Ontology (HAO) and its associated applications. These resources are designed to facilitate accessible and extensible research on hymenopteran phenotypes. Outreach with the hymenopterist community is of utmost importance to the HAO project, and this paper is a direct response to questions that arised from project workshops. In a concerted attempt to surmount barriers of understanding, especially regarding the format, utility, and development of the HAO, we discuss the roles of homology, “preferred terms”, and “structural equivalency”. We also outline the use of Universal Resource Identifiers (URIs) and posit that they are a key element necessary for increasing the objectivity and repeatability of science that references hymenopteran anatomy. Pragmatically, we detail a mechanism (the “URI table”) by which authors can use URIs to link their published text to the HAO, and we describe an associated tool (the “Analyzer”) to derive these tables. These tools, and others, are available through the HAO Portal website (http://portal.hymao.org). We conclude by discussing the future of the HAO with respect to digital publication, cross-taxon ontology alignment, the advent of semantic phenotypes, and community-based curation.