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The application of environmental DNA (eDNA) methods to simultaneously study vertebrate diversity holds promise to accelerate conservation efforts, especially in freshwater systems which are among the most imperiled in the world. Here, using eDNA sampling, we identify patterns of vertebrate biodiversity across different habitats of the Kankakee River watershed, one of the most diverse lotic systems in Illinois, USA. Our eDNA metabarcoding analyses identified 147 different taxa, including 77 fishes, 38 birds, 24 mammals, five amphibians and three reptiles at 11 locations in the watershed, including tributaries and mainstem stretches upstream and within the Kankakee River State Park protected area. When compared to seining, eDNA sampling consistently detected more fish species, including non-native and imperiled species. We also found that vertebrate communities among the different habitats significantly varied in taxonomic composition, showing an upstream-downstream shift along the mainstem river as well as tributary-specific assemblages. Our study demonstrates the ability of single-marker eDNA metabarcoding to simultaneously document aquatic and terrestrial communities across large temperate lotic ecosystems and to monitor diversity patterns across protected areas.

Modern zoos and aquariums aspire to contribute significantly to biodiversity conservation and research. For example, conservation research is a key accreditation criterion of the Association of Zoos and Aquariums (AZA). However, no studies to date have quantified this contribution. We assessed the research productivity of 228 AZA members using scientific publications indexed in the ISI Web of Science (WoS) database between 1993 and 2013 (inclusive). AZA members published 5175 peer-reviewed manuscripts over this period, with publication output increasing over time. Most publications were in the zoology and veterinary science subject areas, and articles classified as “biodiversity conservation” by WoS averaged 7% of total publications annually. From regression analyses, AZA organizations with larger financial assets generally published more, but research-affiliated mission statements were also associated with increased publication output. A strong publication record indicates expertise and expands scientific knowledge, enhancing organizational credibility. Institutions aspiring for higher research productivity likely require a dedicated research focus and adequate institutional support through research funding and staffing. We recommend future work build on our results by exploring links between zoo and aquarium research productivity and conservation outcomes or uptake.

The Guiana Shield in northeastern South America contains some of the largest tracts of intact forests on the globe. Guyana alone has more than 80% forest cover. In south-central Guyana a unique biogeographic feature allows for a hydrological connection between the Guiana Shield with the Amazon basin via the Rupununi savannas and wetlands (Rupununi Portal). This corridor allows for connectivity between two of the most biodiverse, carbon rich, and intact forests in the world. The significance of this (and other) hydrological corridors for terrestrial and aquatic species is underappreciated in the scientific literature. We attempt to determine the importance of the surrounding mosaic of habitats that influence fish assemblages in the Rupununi Portal. We extensively sampled fishes in this corridor over six expeditions. Multivariate analyses revealed significant trends in fish assemblage structure and environmental conditions. We found high species richness and diversity within the Takutu (Amazon River drainage) and Rupununi rivers (Essequibo River drainage). Fish assemblages were found to be most similar within the specific river drainages with some similarity within forest and savanna sites. A second Rupununi portal was revealed in the South Rupununi, at the upper Rupununi and Takutu Rivers. Ordination analyses found water body type, vegetation and water chemistry to be significantly structuring the fish assemblages of the Rupununi. Our study reveals the interdependent nature of the various habitats in the Rupununi that facilitate high biodiversity and maintain the ecosystem. With the increase in human activity in this region, and the increased connectivity of the region with the rest of the world through better roads, this area is in danger of being modified and fragmented to a point where ecosystem services begin to fail. We recommend demarcating a protected area in the region that considers the diversity of associated habitats and the importance of the ecological portal joining two diverse river basins.

Hemiancistrus cerrado is described from the tributaries of rio Araguaia, rio Tocantins basin. Hemiancistrus cerrado has external similarities with H. megalopteryx and H. punctulatus from coastal streams of southern Brazil, and can be distinguished by having a larger internarial width, 15.9-21.1% of head length (vs. 11.2-14.0% in H. megalopteryx and 11.2-13.9% in H. punctulatus) and, with little overlap, by the larger adipose-fin spine length, 9.4-13.6% of standard length (vs. 7.1-8.7% in H. megalopteryx and 7.4-10.0% in H. punctulatus). Hemiancistrus cerrado further differs from H. megalopteryx by having the pectoral-fin spine reaching maximally to the middle of the pelvic-fin spine when adpressed in adult males (vs. reaching tip). Hemiancistrus cerrado differs from other members of Hemiancistrus by color and numerous morphometric and meristic data.

ABSTRACT A new species of Panaqolus is described from material from the Takutu River and the mainstem rio Branco. The new species is diagnosed from congeners by its color pattern consisting of dark and light bars on the body, bands on the fins, and with dots and vermiculations absent (vs. no bars in P. albomaculatus , P. nix , P. nocturnus , and P. koko , vs. fins unbanded in P. albomaculatus , P. dentex , P. koko , and P. nix , and vs. dots and vermiculations present in P. albivermis and P. maccus ). The new species is diagnosed from barred species of Panaqolus by its specific bar number and orientation and color pattern on its head, with bars oriented in a anteroventral-posterodorsal direction (vs. anterodorsal-posteroventral bars in P. gnomus ), having consistently 5 bars (n = 4) on the trunk that do not increase with size (vs. number increasing with size in P. purusiensis and vs. 6-12 in P. changae ), and the color pattern on the head of straight lines extending from posterior to the eye to the snout margin, splitting in the middle portion of the line in larger specimens (vs. small, dense reticulate lines in P. changae ). Biogeographically, we infer that the new species ancestrally originated in the Amazon river, dispersing to the Takutu River after the Amazon captured part of the Proto-Berbice.

Environmental DNA (eDNA) holds great promise for conservation applications like the monitoring of invasive or imperiled species, yet this emerging technique requires ongoing testing in order to determine the contexts over which it is effective. For example, little research to date has evaluated how seasonality of organism behavior or activity may influence detection probability of eDNA. We applied eDNA to survey for two highly imperiled species endemic to the upper Black Warrior River basin in Alabama, US: the Black Warrior Waterdog (Necturus alabamensis) and the Flattened Musk Turtle (Sternotherus depressus). Importantly, these species have contrasting patterns of seasonal activity, with N. alabamensis more active in the cool season (October-April) and S. depressus more active in the warm season (May-September). We surveyed sites historically occupied by these species across cool and warm seasons over two years with replicated eDNA water samples, which were analyzed in the laboratory using species-specific quantitative PCR (qPCR) assays. We then used occupancy estimation with detection probability modeling to evaluate both the effects of landscape attributes on organism presence and season of sampling on detection probability of eDNA. Importantly, we found that season strongly affected eDNA detection probability for both species, with N. alabamensis having higher eDNA detection probabilities during the cool season and S. depressus have higher eDNA detection probabilities during the warm season. These results illustrate the influence of organismal behavior or activity on eDNA detection in the environment and identify an important role for basic natural history in designing eDNA monitoring programs.