Search

Abstract To support and move toward a sustainable bioeconomy, the production of polyhydroxyalkanoates (PHAs) using renewable biomass has acquired more attention. However, expensive biomass pretreatment and low yield of PHAs pose significant disadvantages in its large‐scale production. To overcome such limitations, the most recent advances in metabolic engineering strategies used to develop high‐performance strains that are leading to a new manufacturing concept converting biomass to PHAs with co‐products such as amino acids, proteins, biohydrogen, biosurfactants, and various fine chemicals are critically summarized. This review article presents a comprehensive roadmap that highlights the integrated biorefinery strategies, lifecycle analysis, and techno‐economic assessment for sustainable and economic PHAs production. Finally, current and future challenges that must be addressed to transfer this technology to real‐world applications are reviewed.

Abstract Microplastic pollutes water, land, air, and groundwater environments not only visually but also ecologically for plants, animals, and humans. Microplastic has been reported to act as vectors by sorbing pollutants and contributing to the bioaccumulation of pollutants, particularly in marine ecosystems, organisms, and subsequently food webs. The inevitable exposure of microplastic to humans emphasises the need to review the potential effects, exposure pathways, and toxicity of microplastic toward human health. Therefore, this review was aimed to reveal the risks of pollutant sorption and bioaccumulation by microplastic toward humans, as well as the dominant types of pollutants sorbed by microplastic, and the types of pollutants that are bioaccumulated by microplastic in the living organisms of the marine ecosystem. The possible factors influencing the sorption and bioaccumulation of pollutants by microplastic in marine ecosystems were also reviewed. The review also revealed the prevailing types of microplastic, abundance of microplastic, and geographical distribution of microplastic in the aquatic environment globally. The literature review revealed that microplastic characteristics, chemical interactions, and water properties played a role in the sorption of pollutants by microplastic. The evidence of microplastic posing a direct medical threat to humans is still lacking albeit substantial literature has reported the health hazards of microplastic-associated monomers, additives, and pollutants. This review recommends future research on the existing knowledge gaps in microplastic research, which include the toxicity of microplastic, particularly to humans, as well as the factors influencing the sorption and bioaccumulation of pollutants by microplastic.

Marine resources such as marine invertebrates and mangrove plants favor the production of secondary metabolites that exhibit antifouling properties. These natural-derived compounds are considered environmentally friendly compared to synthetic compounds with similar activity and technological applications. The current study was conducted to determine the antifouling properties of Diadema setosum (DS) and Sonneratia lanceolata (SL) crude extracts and their incorporated paints, in addition to the identification of the metabolites involved. Both crude extracts were tested against Pseudomonas aeruginosa via a crystal violet assay, while the incorporated paints with 5% (SL5% and DS5%) and 10% (SL10% and DS10%) weight per volume (w/v) were tested in an aquarium and submerged in the seawater at Kemaman and Pulau Redang (Malaysia) for field testing. The identification of the bioactive compounds from the crude extracts was carried out using Liquid Chromatography-Mass Spectrometry (LC-MS). The results of the crystal violet assay showed that both of the crude extracts reduced the biofilm formed by Pseudomonas aeruginosa. The marine bacteria growths contained in natural seawater were inhibited the most by SL5%, followed by DS5%, DS10%, and SL10% in the aquarium testing. Based on the photographic observation, all of the paints incorporated with the crude extracts successfully reduced the settlement of fouling organisms compared to the blank paint, as lesser macroalgae were found growing on the SL5%, DS5%, and DS10%. The LC-MS results showed 3-Methyloxiranyl phosphonic acid; (2RS,3SR)-form from the SL crude extract, while the 8-Decene-1,3,5-triol, 3-Hydroxyundecanoic acid, and 1-O-(6-Deoxy-6-sulfoglucopyranosyl)glycerol; α-D-form, 3-Hexadecanoyl from the DS crude extract were involved in the antifouling properties. In conclusion, both crude extracts have the potential to be developed as antifouling agents.

Biofouling is defined as the excessive colonization process of epibiotic organisms, ranging from microfoulers to macrofoulers, on any submerged surface in water. Previous research has attempted to explore the antifouling activity of bacterial isolates due to the biofouling problems occurring worldwide. One solution is to inhibit the early stage of fouling using secondary metabolites produced by marine bacteria. This study aims to determine the antifouling activities of the marine microorganism P. aeruginosa and to characterize the bacteria isolated as a potential anti-biofouling agent. The bacterial isolate was cultured and isolated on a media culture. The bacteria culture extract was extracted using ethyl acetate and concentrated prior to the bioassay method. It was screened for antibacterial activities against Gram-positive and Gram-negative bacteria, such as Bacillus cereus, Streptococcus uberis, Pseudomonas sp., and Vibrio parahaemolyticus, using the disk diffusion technique. The extract was investigated to verify its bioactivity in the prevention of biofilm formation following the crystal violet assay and aquarium test. The results indicated the inhibition of activity through biofilm formation, with the highest percentage at 83% of biofilm inhibition at a concentration of 0.1563 mg/mL. The bacterial isolate at a concentration of 5% showed the highest reduction in bacteria colonies in the aquarium test (161.8 × 103 CFU/mL compared to 722.5 × 103 CFU/mL for the blank sample). The bacterial isolate was characterized through phenotypic and genotypic tests for species identification. It was identified as a Gram-stain-negative, aerobic, and long-rod-shaped bacteria, designated as RLimb. Based on the 16S rDNA gene sequencing analysis, RLimb was identified as Pseudomonas aeruginosa (accession number: OP522351), exhibiting a similarity of 100% to the described neighbor P. aeruginosa strain DSM 50071. These results indicated that these isolated bacteria can potentially be used as a substitute for toxic antifoulants to prevent the formation of microfoulers.

Polyhydroxyalkanoate (PHA) is a microbial storage polymer that is naturally produced by certain bacteria. This is the first study on the ability of this particular species Massilia haematophila to synthesize a PHA copolymer containing 3-hydroxyvalerate (3HV) monomer. Using the statistical design on Massilia haematophila UMTKB-2, this study highlights the optimization of poly(3-hydroxybutyrate-co-3-hydroxyvalerate), P(3HB-co-3HV), copolymer production for shaken-flask cultivation. Moreover, the mechanical and thermal features of the polymers were determined. The production of P(3HB-co-3HV) by Massilia haematophila UMTKB-2 using optimal conditions provided by response surface methodology (RSM) yielded 5.0 g/l of P(3HB-co-7 mol% 3HV), which was higher than the value obtained from unoptimized conditions such as 4.40 g/l of P(3HB-co-4mol% 3HV). This result showed a 14% increase in copolymer concentration and a two-fold increase in 3HV composition. In this study, the P(3HB-co-3HV) synthesized was determined as a block copolymer and its thermal properties were better than P(3HB). Using RSM, the optimization conditions were successfully obtained for this bacterium, and this result is a starting platform for additional studies of a larger scaled PHA production from Massilia haematophila UMTKB-2 using bioreactors.

Polyhydroxyalkanoate (PHA), a biodegradable and plastic-like biopolymer, has been receiving research and industrial attention due to severe plastic pollution, resource depletion, and global waste issues. This has spurred the isolation and characterisation of novel PHA-producing strains through cultivation and non-cultivation approaches, with a particular interest in genes encoding PHA synthesis pathways. Since sea sponges and sediment are marine benthic habitats known to be rich in microbial diversity, sponge tissues (Xestospongia muta and Aaptos aaptos) and sediment samples were collected in this study from Redang and Bidong islands located in the Malaysian Coral Triangle region. PHA synthase (phaC) genes were identified from sediment-associated bacterial strains using a cultivation approach and from sponge-associated bacterial metagenomes using a non-cultivation approach. In addition, phylogenetic diversity profiling was performed for the sponge-associated bacterial community using 16S ribosomal ribonucleic acid (16S rRNA) amplicon sequencing to screen for the potential presence of PHA-producer taxa. A total of three phaC genes from the bacterial metagenome of Aaptos and three phaC genes from sediment isolates (Sphingobacterium mizutaii UMTKB-6, Alcaligenes faecalis UMTKB-7, Acinetobacter calcoaceticus UMTKB-8) were identified. Produced PHA polymers were shown to be composed of 5C to nC monomers, with previously unreported PHA-producing ability of the S. mizutaii strain, as well as a 3-hydroxyvalerate-synthesising ability without precursor addition by the A. calcoaceticus strain.

Marine sponges are acknowledged as a bacterial hotspot and resource of novel natural products or genetic material with industrial or commercial potential. However, sponge-associated bacteria are difficult to be cultivated and the production of their desirable metabolites is inadequate in terms of rate and quantity, yet bioinformatics and metagenomics tools are steadily progressing. Bacterial diversity profiles of high-microbial-abundance wild tropical marine sponges Aaptos aaptos and Xestospongia muta were obtained by sample collection at Pulau Bidong and Pulau Redang islands, 16S rRNA amplicon sequencing on Illumina HiSeq2500 platform (250 bp paired-end) and metagenomics analysis using Ribosomal Database Project (RDP) classifier. Raw sequencing data in fastq format and relative abundance histograms of the dominant 10 species are available in the public repository Discover Mendeley Data (http://dx.doi.org/10.17632/zrcks5s8xp). Filtered sequencing data of operational taxonomic unit (OTU) with chimera removed is available in NCBI accession numbers from MT464469 to MT465036.

The global scale of land salinization has always been a considerable concern for human livelihoods, mainly regarding the food-producing agricultural industries. The latest update suggested that the perpetual salinity problem claimed up to 900 million hectares of agricultural land worldwide, inducing salinity stress among salt-sensitive crops and ultimately reducing productivity and yield. Moreover, with the constant growth of the human population, sustainable solutions are vital to ensure food security and social welfare. Despite that, the current method of crop augmentations via selective breeding and genetic engineering only resulted in mild success. Therefore, using the biological approach of halotolerant plant growth-promoting bacteria (HT-PGPB) as bio-inoculants provides a promising crop enhancement strategy. HT-PGPB has been proven capable of forming a symbiotic relationship with the host plant by instilling induced salinity tolerance (IST) and multiple plant growth-promoting traits (PGP). Nevertheless, the mechanisms and prospects of HT-PGPB application of glycophytic rice crops remains incomprehensively reported. Thus, this review describes a plausible strategy of halophyte-associated HT-PGPB as the future catalyst for rice crop production in salt-dominated land and aims to meet the global Sustainable Development Goals (SDGs) of zero hunger.

We investigated plankton composition and water quality of ballast water from seven international ships docked at Kertih Port, Malaysia. Coscinodiscophyceae and cyanobacteria were the dominant phytoplankton found in ballast water samples, whereas copepod nauplii, Oithona sp., Microstella sp. and Paracalanus sp. were the dominant zooplankton. The densities for both phytoplankton and zooplankton in ships’ ballast and port waters were higher than those of offshore samples. All water quality parameters (except Cr) of port samples were within the safety levels prescribed for ports, oil and gas fields (Class 3) by the Malaysia Marine Water Quality Criteria Standard. The study of fouling organisms using PVC panels revealed that brown algae covered 87–95% of the panels’ surface area but they were subsequently succeeded by barnacles, bivalves and red encrusting algae. Barnacle recruitment, however, was greatly influenced by crab predation which left behind a high percentage cover of barnacle bases as calcareous deposits on panels.

We report data associated with the identification of three polyhydroxyalkanoate synthase genes (phaC) isolated from the marine bacteria metagenome of Aaptos aaptos marine sponge in the waters of Bidong Island, Terengganu, Malaysia. Our data describe the extraction of bacterial metagenome from sponge tissue, measurement of purity and concentration of extracted metagenome, polymerase chain reaction (PCR)-mediated amplification using degenerate primers targeting Class I and II phaC genes, sequencing at First BASE Laboratories Sdn Bhd, and phylogenetic analysis of identified and known phaC genes. The partial nucleotide sequences were aligned, refined, compared with the Basic Local Alignment Search Tool (BLAST) databases, and released online in GenBank. The data include the identified partial putative phaC and their GenBank accession numbers, which are Rhodocista sp. phaC (MF457754), Pseudomonas sp. phaC (MF437016), and an uncultured bacterium AR5-9d_16 phaC (MF457753). Keywords: Marine sponge, Metagenome, Polyhydroxyalkanoate synthase gene, Phylogenetic analysis

Agro-industry by-products are abundant in various valuable compounds. Some of these raw materials are considered as a cheaper carbon source for polyhydroxyalkanoate (PHA) production when compared with pure substrates. It is however often a costly affair for industries to recover the residual carbon components. In this study, poly(3-hydroxybutyrate) [P(3HB)] was produced using a marine Bacillus megaterium UMTKB-1 strain from sweetwater, a by-product from cane sugar refining process. The bioconversion was initiated in shaken-flasks and fermenter experiments. Applications of seawater and sweetwater mixture as well as sweetwater only as PHA culture media were investigated. The produced polymer was characterized using Gas Chromatography (GC) and Gel Permeation Chromatography (GPC). P(3HB) accumulation from tested carbon sources ranged from 3 to 49 wt%. The strain could accumulate P(3HB) in saline conditions when minimal salts medium was replaced with seawater and sweetwater. The P(3HB) content was between 7 and 27 wt%. This strain was also able to grow and accumulate up to 14 wt% P(3HB) when sweetwater was the sole PHA biosynthesis medium. The weights of P(3HB) produced was in the range 3-12 × 105 with polydispersity index values ranging from 2.7 to 3.8. The agroindustry by-products have proven to be potential carbon feedstocks for P(3HB) production. The tested strain was able to grow and accumulate P(3HB) in a novel carbon substrate medium, the sweetwater. This by-product could be used as a raw material for P(3HB) production without any pretreatment.

A significant source of microplastics is from the usage of microbeads in the market since petrochemical plastic bead is a material used in cosmetic scrubs. A possible way to counteract the problem is by the substitution of synthetic plastic to natural biodegradable polymer. Polyhydroxyalkanoate (PHA) is a general class of thermoplastic microbial polymer and it is the best alternative to some petrochemical plastics due to its biodegradability. Some PHA has earned its way into cosmetic application due to its biocompatibility. This data article reports data on the development of biodegradable microbeads by using the double emulsion solvent evaporation technique. Our data describe the extraction of biopolymer from marine bacteria that was cultivated in shaken flask culture, removal of endotoxins using oxidizing agent, the production of microbeads using a peristaltic pump with a specific flowrate and silicon tubing, and the cytotoxicity of the microbeads. Keywords: Masillia haematophilla UMTKB-2, Polyhydroxyalkanoate, Microbeads, Cosmeceutical

Polyhydroxyalkanoates (PHA) are biodegradable polymers that are considered able to replace synthetic plastic because their biochemical characteristics are in some cases the same as other biodegradable polymers. However, due to the disadvantages of costly and non-renewable carbon sources, the production of PHA has been lower in the industrial sector against conventional plastics. At the same time, first-generation sugar-based cultivated feedstocks as substrates for PHA production threatens food security and considerably require other resources such as land and energy. Therefore, attempts have been made in pursuit of suitable sustainable and affordable sources of carbon to reduce production costs. Thus, in this review, we highlight utilising waste lignocellulosic feedstocks (LF) as a renewable and inexpensive carbon source to produce PHA. These waste feedstocks, second-generation plant lignocellulosic biomass, such as maize stoves, dedicated energy crops, rice straws, wood chips, are commonly available renewable biomass sources with a steady supply of about 150 billion tonnes per year of global yield. The generation of PHA from lignocellulose is still in its infancy, hence more screening of lignocellulosic materials and improvements in downstream processing and substrate pre-treatment are needed in the future to further advance the biopolymer sector.

Nanobiotechnology has undoubtedly influenced major breakthroughs in medical sciences. Application of nanosized materials has made it possible for researchers to investigate a broad spectrum of treatments for diseases with minimally invasive procedures. Silver nanoparticles (AgNPs) have been a subject of investigation for numerous applications in agriculture, water treatment, biosensors, textiles, and the food industry as well as in the medical field, mainly due to their antimicrobial properties and nanoparticle nature. In general, AgNPs are known for their superior physical, chemical, and biological properties. The properties of AgNPs differ based on their methods of synthesis and to date, the biological method has been preferred because it is rapid, nontoxic, and can produce well-defined size and morphology under optimized conditions. Nevertheless, the common issue concerning biological or biobased production is its sustainability. Researchers have employed various strategies in addressing this shortcoming, such as recently testing agricultural biowastes such as fruit peels for the synthesis of AgNPs. The use of biowastes is definitely cost-effective and eco-friendly; moreover, it has been reported that the reduction process is simple and rapid with reasonably high yield. This review aims to address the developments in using fruit- and vegetable-based biowastes for biologically producing AgNPs to be applied as antimicrobial coatings in biomedical applications.