310 results on '"F, Rodrigues"'
Search Results
2. Use of supervised and unsupervised approaches to make zonal application maps for variable-rate application of crop growth regulators in commercial cotton fields
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Maria C. da S. Andrea, Cristiano F. de Oliveira, Fabrícia C. M. Mota, Rafael C. dos Santos, Edilson F. Rodrigues Junior, Lucas M. Bianchi, Rodrigo S. de Oliveira, Caio M. de Gouveia, Victor G. S. Barbosa, and Marco A. Bispo E Silva
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Cotton ,Site-specific management ,Crop growth regulator ,Unsupervised framework ,Supervised framework ,Zonal application maps ,Plant culture ,SB1-1110 - Abstract
Abstract Background Zonal application maps are designed to represent field variability using key variables that can be translated into tailored management practices. For cotton, zonal maps for crop growth regulator (CGR) applications under variable-rate (VR) strategies are commonly based exclusively on vegetation indices (VIs) variability. However, VIs often saturate in dense crop vegetation areas, limiting their effectiveness in distinguishing variability in crop growth. This study aimed to compare unsupervised framework (UF) and supervised framework (SUF) approaches for generating zonal application maps for CGR under VR conditions. During 2022–2023 agricultural seasons, an UF was employed to generate zonal maps based on locally collected field data on plant height of cotton, satellite imagery, soil texture, and phenology data. Subsequently, a SUF (based on historical data between 2020–2021 to 2022–2023 agricultural seasons) was developed to predict plant height using remote sensing and phenology data, aiming to replicate same zonal maps but without relying on direct field measurements of plant height. Both approaches were tested in three fields and on two different dates per field. Results The predictive model for plant height of SUF performed well, as indicated by the model metrics. However, when comparing zonal application maps for specific field-date combinations, the predicted plant height exhibited lower variability compared with field measurements. This led to variable compatibility between SUF maps, which utilized the model predictions, and the UF maps, which were based on the real field data. Fields characterized by much pronounced soil texture variability yielded the highest compatibility between the zonal application maps produced by both SUF and UF approaches. This was predominantly due to the greater consistency in estimating plant development patterns within these heterogeneous field environments. While VR application approach can facilitate product savings during the application operation, other key factors must be considered. These include the availability of specialized machinery required for this type of applications, as well as the inherent operational costs associated with applying a single CGR product which differs from the typical uniform rate applications that often integrate multiple inputs. Conclusion Predictive modeling shows promise for assisting in the creation of zonal application maps for VR of CGR applications. However, the degree of agreement with the actual variability in crop growth found in the field should be evaluated on a field-by-field basis. The SUF approach, which is based on plant heigh prediction, demonstrated potential for supporting the development of zonal application maps for VR of CGR applications. However, the degree to which this approach aligns itself with the actual variability in crop growth observed in the field may vary, necessitating field-by-field evaluation.
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- 2025
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3. From Intact to Highly Degraded Mitochondrial Genes in Trypanosoma vivax: New Insights into Introduction from Africa and Adaptation to Exclusive Mechanical Transmission in South America
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Herakles A. Garcia, Adriana C. Rodrigues, Carla M. F. Rodrigues, Andrea S. Florentin, Angélica M. Bethencourt, Armando Reyna-Bello, María Augusta Chávez-Larrea, Carlos L. Pereira, Zacharia Bengaly, Desie Sheferaw, Agapitus B. Kato, Fernando Paiva, Erney F. P. Camargo, and Marta M. G. Teixeira
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animal trypanosomiasis ,Africa ,kinetoplast ,ND7 ,COIII ,epidemiology ,Infectious and parasitic diseases ,RC109-216 ,Biology (General) ,QH301-705.5 - Abstract
Trypanosoma vivax displays distinct mitochondrial genomes: intact in Africa and degraded in South America. This finding, formerly reported from four isolates, suggested an association between mitochondrial mutations and adaptation to exclusive mechanical transmission outside Africa, circumventing mitochondrial activity essential for cyclical transmission by tsetse flies. Here, we characterized the mitochondrial ND7 and COIII genes in 25 South American isolates of T. vivax from livestock from Argentina, Brazil, Colombia, Ecuador, and Venezuela, as well as in 11 African isolates from Mozambique, Ethiopia, Uganda, Nigeria, and Burkina Faso from tsetse flies, antelopes, and cattle. Phylogenetic inference supported the lineages TVV (Trypanosoma vivax vivax) and TVL (Trypanosoma vivax-like), predominant in South America/West Africa and East Africa, respectively. Both ND7 and COIII genes were intact in all African TVV and TVL isolates and, for the first time, in 10 South American isolates from Brazil. Remaining South American isolates exhibited some degree of gene erosion, including ~142 bp deletion at the 3′ end of ND7 disclosed in Venezuela and Colombia, ~163 bp deletion at the 3′ end of ND7 in Brazil and Argentina, and ~750 bp deletion from the 5′ end of ND7 to the 3′ end of COIII in Venezuela. Comprehensive analyses of whole mitochondrial genomes from additional South American and African isolates are crucial for formulating reliable hypotheses regarding the origin, absence, and rapid mitochondrial degradation observed in South American T. vivax.
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- 2024
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4. Systemic alpha-1 adrenergic receptor inhibition reduces sperm damage in adult and aging spontaneously hypertensive rats
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Nicolle R. Machado, Mika A. Miyazaki, Thayná D. Oliveira, Karina T. Dias, Lucas G. Colli, Larissa B. Belardin, Ricardo P. Bertolla, and Stephen F. Rodrigues
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Blood pressure ,Rat ,Aging ,Adrenergic receptor ,Microcirculation ,Hypertension ,Medicine ,Science - Abstract
Abstract Decreased sperm quality has been reported in men with different clinical conditions, including aging and hypertension. In the male reproductive tract, it has been suggested that the α1-adrenergic receptor influences fertility and spermatogenesis, and important functions are also attributed to the renin–angiotensin axis, such as regulation of steroidogenesis, spermatogenesis, and sperm function. Previously, our group demonstrated impaired testicular vasomotion via α1-adrenergic receptor activation and increased hypoxia-related proteins in the testes of spontaneously hypertensive rats (SHRs) compared to Wistar normotensive rats. In this study, we aimed to investigate the effect of hypertension and inhibition of systemic α1-adrenergic receptor or angiotensin II AT1 receptor on sperm quality, sperm functional characteristics, and testicular microcirculation in rats from three different ages: young (8–10-week-old), adult (20–24-week-old) and older adult (60–66-week-old). We observed higher blood pressure in SHRs of all ages compared to age-matched Wistar rats. Lower blood pressure was observed either in prazosin or losartan-treated adult or aged SHRs. Additionally, lower sperm concentration, impaired motility and higher acrosome damage were demonstrated in SHRs. Prazosin treatment alleviated the effects of hypertension on sperm concentration and motility but not acrosome damage. Higher vasomotion was noticed in testicular blood vessels of adult and aged SHRs compared to Wistar rats. Thus, impaired sperm quality was observed in SHRs of different ages and was improved by sub-chronically blocking the α1-adrenergic receptor.
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- 2024
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5. Insights on avian life history and physiological traits in Central Africa: ant-following species have young-dominated age ratios in secondary forest
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Panagiotis Nikolaou, Billi A. Krochuk, Patricia F. Rodrigues, Kristin E. Brzeski, Susana L. Mufumu, Silvestre E. Malanza, Christopher M. Tonra, Jacob C. Cooper, Jared D. Wolfe, and Luke L. Powell
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Afrotropics ,disturbance ,first year birds ,ant-following birds ,understory birds ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
The Congo Basin rainforest and adjacent Lower Guinea Forest constitute the second largest tract of lowland tropical rainforest in the world. As with the rest of the continent, human population is increasing rapidly and forest degradation is ubiquitous. Forest degradation through logging has pervasive negative effects on ecosystems, but selective logging is considered less impactful than clearcutting. Recent research in Afrotropical forest shows that certain avian species and guilds are more affected by selective logging than others (e.g., specialist insectivores such as followers of Dorylus driver ants); however, the mechanisms behind these patterns are poorly known. In an eight-year mist-netting effort in Equatorial Guinea, we caught 1193 birds in primary forest and high-grade selectively logged forest to determine the effect of disturbance on six demographic and physiological measures on birds. We compared five life history and population traits for ten insectivorous species: proportion of breeding and molting birds, molt-breeding overlap, bird age, and a body mass index. We also analyzed the concentrations of the stress hormone feather corticosterone (fCORT) in five species. All three strict ant-following species (Alethe castanea, Chamaetylas poliocephala, Neocossyphus poensis), and the Muscicapid robin Sheppardia cyornithopsis had a higher proportion of first year birds in secondary forest. Furthermore, two ant-followers, A. castanea and C. poliocephala, had a higher proportion of individuals molting in primary forest. Finally, only Illadopsis cleaveri had higher body condition in secondary forest. We found no differences in breeding status, molt-breeding overlap or fCORT between forest types. Using a long-term mist-netting effort, we use measures taken from birds in-the-hand to go beyond insights from point counts alone; we gain valuable insights into the demography and physiology of Afrotropical birds occupying variably degraded lowland tropical rainforest.
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- 2025
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6. The multidrug-resistant Candida auris, Candida haemulonii complex and phylogenetic related species: Insights into antifungal resistance mechanisms
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Lívia S. Ramos, Pedro F. Barbosa, Carolline M.A. Lorentino, Joice C. Lima, Antonio L. Braga, Raquel V. Lima, Lucas Giovanini, Ana Lúcia Casemiro, Nahyara L.M. Siqueira, Stefanie C. Costa, Célia F. Rodrigues, Maryam Roudbary, Marta H. Branquinha, and André L.S. Santos
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Candida auris ,Candida haemulonii complex ,Candida pseudohaemulonii ,Candida vulturna ,Antifungal resistance ,Biofilm ,Microbiology ,QR1-502 ,Genetics ,QH426-470 - Abstract
The rise of multidrug-resistant (MDR) fungal pathogens poses a serious global threat to human health. Of particular concern are Candida auris, the Candida haemulonii complex (which includes C. haemulonii sensu stricto, C. duobushaemulonii and C. haemulonii var. vulnera), and phylogenetically related species, including C. pseudohaemulonii and C. vulturna. These emerging, widespread, and opportunistic pathogens have drawn significant attention due to their reduced susceptibility to commonly used antifungal agents, particularly azoles and polyenes, and, in some cases, therapy-induced resistance to echinocandins. Notably, C. auris is classified in the critical priority group on the World Health Organization's fungal priority pathogens list, which highlights fungal species capable of causing systemic infections with significant mortality and morbidity risks as well as the challenges posed by their MDR profiles, limited treatment and management options. The mechanisms underlying antifungal resistance within these emerging fungal species is still being explored, but some advances have been achieved in the past few years. In this review, we compile current literature on the distribution of susceptible and resistant clinical strains of C. auris, C. haemulonii complex, C. pseudohaemulonii and C. vulturna across various antifungal classes, including azoles (fluconazole, voriconazole, itraconazole), polyenes (amphotericin B), echinocandins (caspofungin, micafungin, anidulafungin), and pyrimidine analogues (flucytosine). We also outline the main antifungal resistance mechanisms identified in planktonic cells of these yeast species. Finally, we explore the impact of biofilm formation, a classical virulence attribute of fungi, on antifungal resistance, highlighting the resistance mechanisms associated with this complex microbial structure that have been uncovered to date.
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- 2025
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7. Pharmacokinetic model-based assessment of factor IX prophylaxis treatment regimens in severe hemophilia B
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Björn Vandewalle, Giancarlo Castaman, Maria Teresa Álvarez-Román, Carmen Escuriola Ettingshausen, László Nemes, Radovan Tomic, Paulo Martins, Joana F. Rodrigues, and Karen Pinachyan
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Medicine ,Science - Abstract
Abstract An important aspect of improving care for people with hemophilia B (HB) is developing optimal treatment strategies. Here we aimed to provide in-silico evidence, comparing the estimated optimal posology of factor IX (FIX) products to support the patient-physician decision-making process. A population pharmacokinetic (popPK) model-based assessment comparing the performance of FIX products (rFIX, rIX-FP, rFIXFc, N9-GP) was developed. PopPK analyses were used to determine a product’s optimal posology to target predefined steady-state FIX activity trough levels in a hypothetical population of 10,000 people with severe HB. Model-derived optimal posologies were compared across several parameters including trough levels, proportion of patients per regimen and consumption, considering 64 hypothetical patient scenarios of different FIX trough level targets and ages. Results indicated a marked difference between FIX products estimated to achieve target trough levels, consumption and dosing frequencies. rIX-FP was associated with higher trough levels than rFIX and rFIXFc, at a lower weekly dose and administration frequency, across all age groups. N9-GP use in adolescents and adults was associated with lower consumption compared with rIX-FP. Insights from this study may be utilized by clinicians to inform decision-making, by considering the model-generated estimated optimal posologies alongside multiple clinical factors and patient preferences.
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- 2024
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8. Analysis of Multispectral Indices as a Tool for Segmenting and Quantifying the Seaweed Kappaphycus alvarezii in a Commercial Cultivation System
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Marcel M. Innocentini, Ellen F. Rodrigues, Juliano K. Mathion, Edilson Carlos Caritá, Lisandro Simão, and Mozart Marins
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Kappaphycus alvarezzi ,unmanned aerial vehicles ,drones ,multispectral indices ,Biotechnology ,TP248.13-248.65 - Abstract
The red seaweed Kappaphycus alvarezii is an economically important gelling agent κappa carrageenan source. Phytochemical analysis has pointed to the presence of various other inorganic and organic compounds, which are expanding the application of biomass as a biostimulant in the agroindustry and as a source of new bioactive molecules in the food, chemical, and pharmaceutical industries. Native to Southeast Asia, K. alvarezii has been introduced as an exotic species in Brazil for commercial large-scale farming. Nowadays, legal farming areas are located in the South and on the South-East coast, but with initiatives to be authorized in the country’s Northeast. The biomass yield in a large-scale farming system can be affected by cultivation techniques and environmental stressors, such as temperature, salinity, water quality, disease, and predators. The use of high-resolution images obtained with unmanned aerial vehicles (UAV or drones) is becoming a popular technology in agriculture, and it has the potential to be employed in seaweed farming to extract a variety of variables and features to predict biomass yield throughout the cultivation period. The present study was conducted to analyze and select multispectral indices obtained from images collected by drone for the detection and quantification of K. alvarezii in a commercial cultivation environment in Brazil. Frequency analysis of pixel values, statistical analyses, and visual interpretations for 24 pre-selected indices was applied according to scores attributed to the efficiency of image segmentation. This analysis resulted in the selection of four indices (ABDI1, ABDI2, CIG, and GNDVI) as the best ones for the segmentation of images in the K. alvarezii commercial farms analyzed. The data obtained are the first step in improving the analysis process of images generated by drones, which will facilitate decision-making and better management, and help scale-up K. alvarezii farming in Brazil.
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- 2024
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9. Implantation of asymmetrical corneal intrastromal rings: A case series
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Marina S Saito, Ana P C Silva, João M C Ribeiro, Delso Bonfante, Pablo F Rodrigues, Bernardo K Moscovici, Guilherme N C Barboza, and Marcello N C Barboza
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cornea ,corneal astigmatism ,corneal diseases ,corneal topography ,intrastromal ring ,keratoconus ,Ophthalmology ,RE1-994 - Abstract
This case series reports eight eyes with keratoconus treated with laser implantation of one or two segments of progressive thickness corneal intrastromal ring (PT-ICRS). In this case series, it was evident that the insertion of PT-ICRS induces more pronounced corneal flattening at the thickest point, causing a reduction in distortion (coma) and lower astigmatism, resulting in a remarkable improvement in vision. Compared to the implementation of traditional intrastromal rings, the PT-ICRS variant showed superior results despite the small sample size. However, the same degree of asymmetry enhancement was not observed in cases in which a 330° PT-ICRS was implanted, despite the improvement in visual results when replacing a 320° traditional ring with a 330° PT-ICRS. These conclusions are limited as this is a case series with few cases.
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- 2024
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10. Renin Is Essential for Angiotensin II Formation in the Brain
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André F. Rodrigues, Oliver Domenig, Ingrid M. Garrelds, A.H. Jan Danser, Natalia Alenina, Marko Poglitsch, and Michael Bader
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angiotensinogen ,brain renin–angiotensin system ,tissue renin–angiotensin system ,transgenic ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2024
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11. CXCR3-expressing myeloid cells recruited to the hypothalamus protect against diet-induced body mass gain and metabolic dysfunction
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Natalia Mendes, Ariane Zanesco, Cristhiane Aguiar, Gabriela F Rodrigues-Luiz, Dayana Silva, Jonathan Campos, Niels Olsen Saraiva Camara, Pedro Moraes-Vieira, Eliana Araujo, and Licio A Velloso
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microglia ,inflammation ,diabetes ,neuron ,fatty acids ,glucose ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Microgliosis plays a critical role in diet-induced hypothalamic inflammation. A few hours after a high-fat diet (HFD), hypothalamic microglia shift to an inflammatory phenotype, and prolonged fat consumption leads to the recruitment of bone marrow-derived cells to the hypothalamus. However, the transcriptional signatures and functions of these cells remain unclear. Using dual-reporter mice, this study reveals that CX3CR1-positive microglia exhibit minimal changes in response to a HFD, while significant transcriptional differences emerge between microglia and CCR2-positive recruited myeloid cells, particularly affecting chemotaxis. These recruited cells also show sex-specific transcriptional differences impacting neurodegeneration and thermogenesis. The chemokine receptor CXCR3 is emphasized for its role in chemotaxis, displaying notable differences between recruited cells and resident microglia, requiring further investigation. Central immunoneutralization of CXCL10, a ligand for CXCR3, resulted in increased body mass and decreased energy expenditure, especially in females. Systemic chemical inhibition of CXCR3 led to significant metabolic changes, including increased body mass, reduced energy expenditure, elevated blood leptin, glucose intolerance, and decreased insulin levels. This study elucidates the transcriptional differences between hypothalamic microglia and CCR2-positive recruited myeloid cells in diet-induced inflammation and identifies CXCR3-expressing recruited immune cells as protective in metabolic outcomes linked to HFD consumption, establishing a new concept in obesity-related hypothalamic inflammation.
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- 2024
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12. Antioxidant treatment for oligoasthenoteratozoospermia and varicocele: a DBPC trial to evaluate the impact of age and body mass index
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Gian Maria Busetto, Bernarde F Rodrigues, Ashraf Virmani, Andrea Checchia, Antonella Ninivaggi, Anna Ricapito, Giovanni Barbieri, Piero Fischetti, Ugo G Falagario, Pasquale Annese, Nicola d’Altilia, Vito Mancini, Matteo Ferro, Felice Crocetto, Angelo Porreca, Carlo Bettocchi, Luigi Cormio, Ashok Agarwal, and Giuseppe Carrieri
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aging ,antioxidants ,body mass index ,oligoasthenoteratozoospermia ,varicocele ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Oxidative stress is one of the main mechanisms responsible for male infertility. Various conditions such as varicocele, obesity, advanced age, and lifestyle can lead to an increase in reactive oxygen species, causing an oxidative imbalance in the reproductive environment. Spermatozoa are sensitive to reactive oxygen species and require energy to carry out their main function of fertilizing the egg. Excessive reactive oxygen species can affect sperm metabolism, leading to immobility, impaired acrosome reaction, and cell death, thereby impairing reproductive success. This double-blind randomized study evaluated the effect of supplementation with L-carnitine, acetyl-L-carnitine, vitamins, and other nutrients on semen quality in 104 infertile patients with or without varicocele, while also investigating the impact of factors such as obesity and advanced age on treatment. Sperm concentration significantly increased in the supplemented group compared to the placebo group (P = 0.0186). Total sperm count also significantly increased in the supplemented group (P = 0.0117), as did sperm motility (P = 0.0120). The treatment had a positive effect on patients up to 35 years of age in terms of sperm concentration (P = 0.0352), while a body mass index (BMI) above 25 kg m−2 had a negative effect on sperm concentration (P = 0.0110). Results were not showing a net benefit in stratifying patients in accordance with their BMI since sperm quality increase was not affected by this parameter. In conclusion, antioxidant supplementation may be beneficial for infertile patients and has a more positive effect on younger patients with a normal weight.
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- 2024
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13. Coleoptera of Brazil: what we knew then and what we know now. Insights from the Catálogo Taxonômico da Fauna do Brasil
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Edilson Caron, Marcela L. Monné, Vinicius S. Ferreira, Cleide Costa, Mario Cupello, Sergio Aloquio, Adelita M. Linzmeier, Fernando Z. Vaz-de-Mello, Fernando W.T. Leivas, Igor Souza-Gonçalves, José R.M. Mermudes, Lúcia M. Almeida, Luciano de A. Moura, Nelson Ferreira Júnior, Paschoal C. Grossi, Sergio A. Vanin, Adam Ślipiński, Alexander Anichtchenko, Alfred F. Newton, Aline Sampaio, Allan Carelli, Anderson Puker, André da S. Ferreira, André S. Fernandes, André S. Roza, Andrew Cline, Brunno H.L. Sampaio, Bruno Clarkson, Camila F. de Castro, Carla de L. Bicho, César J. Benetti, Cibele S. Ribeiro-Costa, Cristiano Lopes-Andrade, Daiara Manfio, Daniara Colpani, Daniel S. Basílio, Daniela de C. Bená, Darren A. Pollock, Diego de S. Souza, Diego F. Rodrigues, Donald S. Chandler, Elynton A. do Nascimento, Erich L. Spiessberger, Federico A. Agrain, Felipe F. Barbosa, Floyd Shockley, Francisco E. de L. Nascimento, Gabriel Biffi, Gareth S. Powell, Geoffrey E. Morse, Gustavo E. Flores, Hermes Escalona, Hingrid Y.S. Quintino, Hugo L. Rainho, Italo S.C.P. Maddalena, Jiří Hájek, Joseph V. McHugh, Juan P. Botero, Juares Fuhrmann, Julissa M. Churata-Salcedo, Letícia M. Vieira, Luiz F.L. da Silveira, Luiza S. da Cruz, Lukás Sekerka, Marco A. Bologna, Marcus V.O. Bevilaqua, Maria I. Passos, Maria L. Chamorro, Mariana A. Cherman, Matheus Bento, Matthew Gimmel, Melissa O. Segura, Michael A. Ivie, Michael C. Thomas, Miguel A. Monné, Nathan Lord, Neusa Hamada, Nicolas Degallier, Paula B. dos Santos, Paulo R.M. Duarte, Pedro Gnaspini, Petr Bulirsch, Renato Regalin, Richard A.B. Leschen, Robert Constantin, Rodrigo C. Corrêa, Roland Gerstmeier, Simone P. Rosa, Stéphanie V.N. Campos, Stewart B. Peck, Thaynara L. Pacheco, Thiago T.S. Polizei, Thomas C. McElrath, Traci L. Grzymala, Trevor R. Smith, Vinicius da Costa-Silva, Vivian E. Sandoval-Gómez, Wesley O. de Sousa, and Wioletta Tomaszewska
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Beetles ,biodiversity ,list ,Neotropical ,South America ,CTFB ,Zoology ,QL1-991 - Abstract
ABSTRACT In 2000, Cleide Costa published a paper presenting the state of knowledge of the Neotropical Coleopte ra, with a focus on the Brazilian fauna. Twenty-four years later, thanks to the development of the Coleoptera section of the Taxonomic Catalog of the Brazilian Fauna (CTFB - Catálogo Taxonômico da Fauna do Brasil) through the collaboration of 100 coleopterists from all over the globe, we can build on Costa’s work and present an updated overview of the state of knowledge of the beetles from Brazil. There are currently 35,699 species in 4,958 genera and 116 families known to occur in the country, including representatives of all extant suborders and superfamilies. Our data show that the Brazilian beetle fauna is the richest on the planet, concentrating 9% of the world species diversity, with some estimates accounting to up to 15% of the global total. The most diverse family in numbers of genera is Cerambycidae (1,056 genera), while in number of species it is Chrysomelidae (6,079 species). Conotrachelus Dejean, 1835 (Curculionidae) is the most species-rich genus, with 570 species. The French entomologist Maurice Pic is the author who has contributed the most to the naming of species recorded from Brazil, with 1,794 valid names in 36 families, whereas the Brazilians Ubirajara R. Martins and Maria Helena M. Galileo are the only ones among the top-ten authors to have named species in the 21st century. Currently, approximately 144 new species of Brazilian beetles are described each year, and this average is projected to increase in the next decade to 180 species per year, or about one new Brazilian beetle every two days.
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- 2024
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14. Bioethanol production by immobilized co-culture of Saccharomyces cerevisiae and Scheffersomyces stipitis in a novel continuous 3D printing microbioreactor
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PEDRO HENRIQUE F. RODRIGUES, ELIZABETH G. DA SILVA, ALEX S. BORGES, GABRIEL LUIS CASTIGLIONI, CARLOS ALBERTO G. SUAREZ, and INTI DORACI C. MONTANO
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hemicellulose ,xylose ,xylulose ,biocatalyst ,ethanol ,continuous fermentation ,Science - Abstract
Abstract Biorefineries require low-cost production processes, low waste generation and equipment that can be used not only for a single process, but for the manufacture of several products. In this context, in this research a continuous 3D printing microbioreactor coupled to an Arduino-controlled automatic feeding system was developed for the intensification of the ethanol production process from xylose/xylulose (3:1), using a new biocatalyst containing the co-culture of Scheffersomyces stipitis and Saccharomyces cerevisiae (50/50). Initially, batch fermentations of monocultures of S. cerevisiae and S. stipitis and co-culture were carried out. Subsequently, the immobilized co-culture was used as a biocatalyst in continuous fermentations using the developed microreactor. Fermentations carried out in the microbioreactor presented a 2-fold increase in the ethanol concentration and a 3-fold increase in productivity when compared to monocultures. The microbioreactor developed proved to be efficient and can be extended for other bioproducts production. This approach proved to be a promising alternative for the use of the hemicellulose fraction of biomasses without the need to use modified strains.
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- 2024
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15. SynchroLINNce: toolbox for Neural Synchronization and Desynchronization Assessment in Epilepsy Animal Models
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Sofia M. A. F. Rodrigues and Vinícius R. Cota
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Toolbox ,MATLAB ,epileptiform spike ,epilepsy ,neural synchronization ,Psychology ,BF1-990 - Abstract
Epilepsy is a worldwide public health issue, given its biological, social, and economic impacts. Considering several open questions about synchronization and desynchronization mechanisms underlying epileptic phenomena, the development of algorithms and computational toolboxes for such analysis is highly relevant to their research. Moreover, given the recent developments of neurotechnology for epilepsy, it is essential to understand that proposals like computational tools may provide consistent data for closed-loop control systems, necessary in neuromodulation treatment alternatives, and for real-time monitoring systems to predict the occurrence of epileptic seizures. In the present work, SynchroLINNce, a freely distributable MATLAB toolbox designed to be used by epilepsy neuroscientists, including software-untrained), is proposed. Among its features, several functionalities such as recording visualization, digital filtering, and correlation analysis, as well as more specific methodologies, such as mechanisms for the automatic detection of epileptiform spikes, morphology analysis of these spikes, and their coincidence between channels are presented.
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- 2024
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16. High-repetition-rate ultrafast electron diffraction with direct electron detection
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F. Rodrigues Diaz, M. Mero, and K. Amini
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Crystallography ,QD901-999 - Abstract
Ultrafast electron diffraction (UED) instruments typically operate at kHz or lower repetition rates and rely on indirect detection of electrons. However, these experiments encounter limitations because they are required to use electron beams containing a relatively large number of electrons (≫100 electrons/pulse), leading to severe space-charge effects. Consequently, electron pulses with long durations and large transverse diameters are used to interrogate the sample. Here, we introduce a novel UED instrument operating at a high repetition rate and employing direct electron detection. We operate significantly below the severe space-charge regime by using electron beams containing 1–140 electrons per pulse at 30 kHz. We demonstrate the ability to detect time-resolved signals from thin film solid samples with a difference contrast signal, Δ I / I 0 , and an instrument response function as low as 10−5 and 184-fs (FWHM), respectively, without temporal compression. Overall, our findings underscore the importance of increasing the repetition rate of UED experiments and adopting a direct electron detection scheme, which will be particularly impactful for gas-phase UED. Our newly developed scheme enables more efficient and sensitive investigations of ultrafast dynamics in photoexcited samples using ultrashort electron beams.
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- 2024
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17. Brazilian Scarabaeoidea (Insecta: Coleoptera) in the Taxonomic Catalogue of the Brazilian Fauna, with a key for families and subfamilies
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Vinícius da Costa-Silva, André da Silva Ferreira, Bruna R. Bordin, Daniel S. Basílio, Diego F. Rodrigues, Emanuel R.R. Gama, Juares Fuhrmann, Júlia Mariano, Marcus Bevilaqua, Mariana A. Cherman, Paulo R.M. Duarte, Paschoal C. Grossi, and Fernando Z. Vaz-de-Mello
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Beetles ,checklist ,Lamellicornia ,taxonomy ,CTFB ,Zoology ,QL1-991 - Abstract
ABSTRACT A comprehensive overview of Scarabaeoidea in Brazil is provided based on the Taxonomic Catalogue of the Brazilian Fauna (CTFB). Data in CTFB include 2,532 valid species within 345 genera, belonging to 21 subfamilies and 10 families. Those have been described by 272 authors from 1758 to 2023. Among these authors, Carl Hermann Conrad Burmeister (1807-1892), George Frey (1902-1976), Friedrich Ohaus (1864-1946), Julius Moser (1863-1929), and Edgar von Harold (1830-1886) stand out as the most prolific, collectively accounting for approximately 43% of all known Brazilian species of Scarabaeoidea. For taxa occurring in Brazil, we also provide a dichotomous key for use identifying Scarabaeoidea families and subfamilies, along with diagnosis, remarks, and comments on their natural history.
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- 2024
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18. Catálogo Taxonômico da Fauna do Brasil: Setting the baseline knowledge on the animal diversity in Brazil
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Walter A. Boeger, Michel P. Valim, Hussam Zaher, José A. Rafael, Rafaela C. Forzza, Alexandre R. Percequillo, Cristiana S. Serejo, André R.S. Garraffoni, Adalberto J. Santos, Adam Slipinski, Adelita M. Linzmeier, Adolfo R. Calor, Adrian A. Garda, Adriano B. Kury, Agatha C.S. Fernandes, Aisur I. Agudo-Padrón, Alberto Akama, Alberto M. da Silva Neto, Alejandro L. Burbano, Aleksandra Menezes, Alessandre Pereira-Colavite, Alexander Anichtchenko, Alexander C. Lees, Alexandra M.R. Bezerra, Alexandre C. Domahovski, Alexandre D. Pimenta, Alexandre L.P. Aleixo, Alexandre P. Marceniuk, Alexandre S. de Paula, Alexandre Somavilla, Alexandre Specht, Alexssandro Camargo, Alfred F. Newton, Aline A.S. da Silva, Aline B. dos Santos, Aline D. Tassi, Allan C. Aragão, Allan P.M. Santos, Alvaro E. Migotto, Amanda C. Mendes, Amanda Cunha, Amazonas Chagas Júnior, Ana A.T. de Sousa, Ana C. Pavan, Ana C.S. Almeida, Ana L.B.G. Peronti, Ana L. Henriques-Oliveira, Ana L. Prudente, Ana L. Tourinho, Ana M.O. Pes, Ana P. Carmignotto, Ana P.G. da Silva Wengrat, Ana P.S. Dornellas, Anamaria Dal Molin, Anderson Puker, André C. Morandini, André da S. Ferreira, André L. Martins, André M. Esteves, André S. Fernandes, André S. Roza, Andreas Köhler, Andressa Paladini, Andrey J. de Andrade, Ângelo P. Pinto, Anna C. de A. Salles, Anne I. Gondim, Antonia C.Z. Amaral, Antonio A.A. Rondón, Antonio Brescovit, Antônio C. Lofego, Antonio C. Marques, Antonio Macedo, Artur Andriolo, Augusto L. Henriques, Augusto L. Ferreira Júnior, Aurino F. de Lima, Ávyla R. de A. Barros, Ayrton do R. Brito, Bárbara L.V. Romera, Beatriz M.C. de Vasconcelos, Benjamin W. Frable, Bernardo F. Santos, Bernardo R. Ferraz, Brunno B. Rosa, Brunno H.L. Sampaio, Bruno C. Bellini, Bruno Clarkson, Bruno G. de Oliveira, Caio C.D. Corrêa, Caleb C. Martins, Camila F. de Castro-Guedes, Camilla Souto, Carla de L. Bicho, Carlo M. Cunha, Carlos A. de M. Barboza, Carlos A.S. de Lucena, Carlos Barreto, Carlos D.C.M. de Santana, Carlos E.Q. Agne, Carlos G.C. Mielke, Carlos H.S. Caetano, Carlos H.W. Flechtmann, Carlos J.E. Lamas, Carlos Rocha, Carolina S. Mascarenhas, Cecilia B. Margaría, Cecilia Waichert, Celina Digiani, Célio F.B. Haddad, Celso O. Azevedo, Cesar J. Benetti, Charles M.D. dos Santos, Charles R. Bartlett, Cibele Bonvicino, Cibele S. Ribeiro-Costa, Cinthya S.G. Santos, Cíntia E.L. Justino, Clarissa Canedo, Claudia C. Bonecker, Cláudia P. Santos, Claudio J.B. de Carvalho, Clayton C. Gonçalves, Cleber Galvão, Cleide Costa, Cléo D.C. de Oliveira, Cristiano F. Schwertner, Cristiano L. Andrade, Cristiano M. Pereira, Cristiano Sampaio, Cristina de O. Dias, Daercio A. de A. Lucena, Daiara Manfio, Dalton de S. Amorim, Dalva L. de Queiroz, Daniara Colpani, Daniel Abbate, Daniel A. Aquino, Daniel Burckhardt, Daniel C. Cavallari, Daniel de C. Schelesky Prado, Daniel L. Praciano, Daniel S. Basílio, Daniela de C. Bená, Daniela G.P. de Toledo, Daniela M. Takiya, Daniell R.R. Fernandes, Danilo C. Ament, Danilo P. Cordeiro, Darliane E. Silva, Darren A. Pollock, David B. Muniz, David I. Gibson, David S. Nogueira, Dayse W.A. Marques, Débora Lucatelli, Deivys M.A. Garcia, Délio Baêta, Denise N.M. Ferreira, Diana Rueda-Ramírez, Diego A. Fachin, Diego de S. Souza, Diego F. Rodrigues, Diego G. de Pádua, Diego N. Barbosa, Diego R. Dolibaina, Diogo C. Amaral, Donald S. Chandler, Douglas H.B. Maccagnan, Edilson Caron, Edrielly Carvalho, Edson A. Adriano, Edson F. de Abreu Júnior, Edson H.L. Pereira, Eduarda F.G. Viegas, Eduardo Carneiro, Eduardo Colley, Eduardo Eizirik, Eduardo F. dos Santos, Eduardo M. Shimbori, Eduardo Suárez-Morales, Eliane P. de Arruda, Elisandra A. Chiquito, Élison F.B. Lima, Elizeu B. de Castro, Elton Orlandin, Elynton A. do Nascimento, Emanuel Razzolini, Emanuel R.R. Gama, Enilma M. de Araujo, Eric Y. Nishiyama, Erich L. Spiessberger, Érika C.L. dos Santos, Eugenia F. Contreras, Eunice A.B. Galati, Evaldo C. de Oliveira Junior, Fabiana Gallardo, Fabio A. Hernandes, Fábio A. Lansac-Tôha, Fabio B. Pitombo, Fabio Di Dario, Fábio L. dos Santos, Fabio Mauro, Fabio O. do Nascimento, Fabio Olmos, Fabio R. Amaral, Fabio Schunck, Fábio S. P. de Godoi, Fabrizio M. Machado, Fausto E. Barbo, Federico A. Agrain, Felipe B. Ribeiro, Felipe F.F. Moreira, Felipe F. Barbosa, Fenanda S. Silva, Fernanda F. Cavalcanti, Fernando C. Straube, Fernando Carbayo, Fernando Carvalho Filho, Fernando C.V. Zanella, Fernando de C. Jacinavicius, Fernando H.A. Farache, Fernando Leivas, Fernando M.S. Dias, Fernando Mantellato, Fernando Z. Vaz-de-Mello, Filipe M. Gudin, Flávio Albuquerque, Flavio B. Molina, Flávio D. Passos, Floyd W. Shockley, Francielly F. Pinheiro, Francisco de A.G. de Mello, Francisco E. de L. Nascimento, Francisco L. Franco, Francisco L. de Oliveira, Francisco T. de V. Melo, Freddy R.B. Quijano, Frederico F. Salles, Gabriel Biffi, Gabriel C. Queiroz, Gabriel L. Bizarro, Gabriela Hrycyna, Gabriela Leviski, Gareth S. Powell, Geane B. dos Santos, Geoffrey E. Morse, George Brown, George M.T. Mattox, Geraldo Zimbrão, Gervásio S. Carvalho, Gil F.G. Miranda, Gilberto J. de Moraes, Gilcélia M. Lourido, Gilmar P. Neves, Gilson R.P. Moreira, Giovanna G. Montingelli, Giovanni N. Maurício, Gláucia Marconato, Guilherme E.L. Lopez, Guilherme L. da Silva, Guilherme Muricy, Guilherme R.R. Brito, Guilherme S.T. Garbino, Gustavo E. Flores, Gustavo Graciolli, Gustavo S. Libardi, Heather C. Proctor, Helcio R. Gil-Santana, Henrique R. Varella, Hermes E. Escalona, Hermes J. Schmitz, Higor D.D. Rodrigues, Hilton de C. Galvão Filho, Hingrid Y.S. Quintino, Hudson A. Pinto, Hugo L. Rainho, Igor C. Miyahira, Igor de S. Gonçalves, Inês X. Martins, Irene A. Cardoso, Ismael B. de Oliveira, Ismael Franz, Itanna O. Fernandes, Ivan F. Golfetti, Ivanklin S. Campos-Filho, Ivo de S. Oliveira, Jacques H.C. Delabie, Jader de Oliveira, Jadila S. Prando, James L. Patton, Jamille de A. Bitencourt, Janaina M. Silva, Jandir C. Santos, Janine O. Arruda, Jefferson S. Valderrama, Jeronymo Dalapicolla, Jéssica P. Oliveira, Jiri Hájek, João P. Morselli, João P. Narita, João P.I. Martin, Jocélia Grazia, Joe McHugh, Jorge J. Cherem, José A.S. Farias Júnior, Jose A.M. Fernandes, José F. Pacheco, José L.O. Birindelli, José M. Rezende, Jose M. Avendaño, José M. Barbanti Duarte, José R. Inácio Ribeiro, José R.M. Mermudes, José R. Pujol-Luz, Josenilson R. dos Santos, Josenir T. Câmara, Joyce A. Teixeira, Joyce R. do Prado, Juan P. Botero, Julia C. Almeida, Julia Kohler, Julia P. Gonçalves, Julia S. Beneti, Julian P. Donahue, Juliana Alvim, Juliana C. Almeida, Juliana L. Segadilha, Juliana M. Wingert, Julianna F. Barbosa, Juliano Ferrer, Juliano F. dos Santos, Kamila M.D. Kuabara, Karine B. Nascimento, Karine Schoeninger, Karla M. Campião, Karla Soares, Kássia Zilch, Kim R. Barão, Larissa Teixeira, Laura D. do N.M. de Sousa, Leandro L. Dumas, Leandro M. Vieira, Leonardo H.G. Azevedo, Leonardo S. Carvalho, Leonardo S. de Souza, Leonardo S.G. Rocha, Leopoldo F.O. Bernardi, Letícia M. Vieira, Liana Johann, Lidianne Salvatierra, Livia de M. Oliveira, Lourdes M.A. El-moor Loureiro, Luana B. Barreto, Luana M. Barros, Lucas Lecci, Lucas M. de Camargos, Lucas R.C. Lima, Lucia M. Almeida, Luciana R. Martins, Luciane Marinoni, Luciano de A. Moura, Luciano Lima, Luciano N. Naka, Lucília S. Miranda, Lucy M. Salik, Luis E.A. Bezerra, Luis F. Silveira, Luiz A. Campos, Luiz A.S. de Castro, Luiz C. Pinho, Luiz F.L. Silveira, Luiz F.M. Iniesta, Luiz F.C. Tencatt, Luiz R.L. Simone, Luiz R. Malabarba, Luiza S. da Cruz, Lukas Sekerka, Lurdiana D. Barros, Luziany Q. Santos, Maciej Skoracki, Maira A. Correia, Manoel A. Uchoa, Manuella F.G. Andrade, Marcel G. Hermes, Marcel S. Miranda, Marcel S. de Araújo, Marcela L. Monné, Marcelo B. Labruna, Marcelo D. de Santis, Marcelo Duarte, Marcelo Knoff, Marcelo Nogueira, Marcelo R. de Britto, Marcelo R.S. de Melo, Marcelo R. de Carvalho, Marcelo T. Tavares, Marcelo V. Kitahara, Marcia C.N. Justo, Marcia J.C. Botelho, Márcia S. Couri, Márcio Borges-Martins, Márcio Felix, Marcio L. de Oliveira, Marco A. Bologna, Marco S. Gottschalk, Marcos D.S. Tavares, Marcos G. Lhano, Marcus Bevilaqua, Marcus T.T. Santos, Marcus V. Domingues, Maria A.M. Sallum, María C. Digiani, Maria C.A. Santarém, Maria C. do Nascimento, María de los A.M. Becerril, Maria E.A. dos Santos, Maria I. da S. dos Passos, Maria L. Felippe-Bauer, Mariana A. Cherman, Mariana Terossi, Marie L.C. Bartz, Marina F. de C. Barbosa, Marina V. Loeb, Mario Cohn-Haft, Mario Cupello, Marlúcia B. Martins, Martin L. Christofersen, Matheus Bento, Matheus dos S. Rocha, Maurício L. Martins, Melissa O. Segura, Melissa Q. Cardenas, Mércia E. Duarte, Michael A. Ivie, Michael M. Mincarone, Michela Borges, Miguel A. Monné, Mirna M. Casagrande, Monica A. Fernandez, Mônica Piovesan, Naércio A. Menezes, Natalia P. Benaim, Natália S. Reategui, Natan C. Pedro, Nathalia H. Pecly, Nelson Ferreira Júnior, Nelson J. da Silva Júnior, Nelson W. Perioto, Neusa Hamada, Nicolas Degallier, Ning L. Chao, Noeli J. Ferla, Olaf H.H. Mielke, Olivia Evangelista, Oscar A. Shibatta, Otto M.P. Oliveira, Pablo C.L. Albornoz, Pablo M. Dellapé, Pablo R. Gonçalves, Paloma H.F. Shimabukuro, Paschoal Grossi, Patrícia E. da S. Rodrigues, Patricia O.V. Lima, Paul Velazco, Paula B. dos Santos, Paula B. Araújo, Paula K.R. Silva, Paula R. Riccardi, Paulo C. de A. Garcia, Paulo G.H. Passos, Paulo H.C. Corgosinho, Paulo Lucinda, Paulo M.S. Costa, Paulo P. Alves, Paulo R. de O. Roth, Paulo R.S. Coelho, Paulo R.M. Duarte, Pedro F. de Carvalho, Pedro Gnaspini, Pedro G.B. Souza-Dias, Pedro M. Linardi, Pedro R. Bartholomay, Peterson R. Demite, Petr Bulirsch, Piter K. Boll, Rachel M.M. Pereira, Rafael A.P.F. Silva, Rafael B. de Moura, Rafael Boldrini, Rafaela A. da Silva, Rafaela L. Falaschi, Ralf T.S. Cordeiro, Ramon J.C.L. Mello, Randal A. Singer, Ranyse B. Querino, Raphael A. Heleodoro, Raphael de C. Castilho, Reginaldo Constantino, Reinaldo C. Guedes, Renan Carrenho, Renata S. Gomes, Renato Gregorin, Renato J.P. Machado, Renato S. Bérnils, Renato S. Capellari, Ricardo B. Silva, Ricardo Kawada, Ricardo M. Dias, Ricardo Siewert, Ricaro Brugnera, Richard A.B. Leschen, Robert Constantin, Robert Robbins, Roberta R. Pinto, Roberto E. dos Reis, Robson T. da C. Ramos, Rodney R. Cavichioli, Rodolfo C. de Barros, Rodrigo A. Caires, Rodrigo B. Salvador, Rodrigo C. Marques, Rodrigo C. Araújo, Rodrigo de O. Araujo, Rodrigo de V.P. Dios, Rodrigo Johnsson, Rodrigo M. Feitosa, Roger W. Hutchings, Rogéria I.R. Lara, Rogério V. Rossi, Roland Gerstmeier, Ronald Ochoa, Rosa S.G. Hutchings, Rosaly Ale-Rocha, Rosana M. da Rocha, Rosana Tidon, Rosangela Brito, Roseli Pellens, Sabrina R. dos Santos, Sandra D. dos Santos, Sandra V. Paiva, Sandro Santos, Sarah S. de Oliveira, Sávio C. Costa, Scott L. Gardner, Sebastián A. Muñoz Leal, Sergio Aloquio, Sergio L.C. Bonecker, Sergio L. de S. Bueno, Sérgio M. de Almeida, Sérgio N. Stampar, Sérgio R. Andena, Sergio R. Posso, Sheila P. Lima, Sian de S. Gadelha, Silvana C. Thiengo, Simone C. Cohen, Simone N. Brandão, Simone P. Rosa, Síria L.B. Ribeiro, Sócrates D. Letana, Sonia B. dos Santos, Sonia C.S. Andrade, Stephane Dávila, Stéphanie Vaz, Stewart B. Peck, Susete W. Christo, Suzan B.Z. Cunha, Suzete R. Gomes, Tácio Duarte, Taís Madeira-Ott, Taísa Marques, Talita Roell, Tarcilla C. de Lima, Tatiana A. Sepulveda, Tatiana F. Maria, Tatiana P. Ruschel, Thaiana Rodrigues, Thais A. Marinho, Thaís M. de Almeida, Thaís P. Miranda, Thales R.O. Freitas, Thalles P.L. Pereira, Thamara Zacca, Thaynara L. Pacheco, Thiago F. Martins, Thiago M. Alvarenga, Thiago R. de Carvalho, Thiago T.S. Polizei, Thomas C. McElrath, Thomas Henry, Tiago G. Pikart, Tiago J. Porto, Tiago K. Krolow, Tiago P. Carvalho, Tito M. da C. Lotufo, Ulisses Caramaschi, Ulisses dos S. Pinheiro, Ulyses F.J. Pardiñas, Valéria C. Maia, Valeria Tavares, Valmir A. Costa, Vanessa S. do Amaral, Vera C. Silva, Vera R. dos S. Wolff, Verônica Slobodian, Vinícius B. da Silva, Vinicius C. Espíndola, Vinicius da Costa-Silva, Vinicius de A. Bertaco, Vinícius Padula, Vinicius S. Ferreira, Vitor C.P. da Silva, Vítor de Q. Piacentini, Vivian E. Sandoval-Gómez, Vivian Trevine, Viviane R. Sousa, Vivianne B. de Sant’Anna, Wayne N. Mathis, Wesley de O. Souza, Wesley D. Colombo, Wioletta Tomaszewska, Wolmar B. Wosiacki, Ximena M.C. Ovando, and Yuri L.R. Leite
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Biodiversity ,knowledge management ,taxonomy ,web services ,zoology ,Zoology ,QL1-991 - Abstract
ABSTRACT The limited temporal completeness and taxonomic accuracy of species lists, made available in a traditional manner in scientific publications, has always represented a problem. These lists are invariably limited to a few taxonomic groups and do not represent up-to-date knowledge of all species and classifications. In this context, the Brazilian megadiverse fauna is no exception, and the Catálogo Taxonômico da Fauna do Brasil (CTFB) (http://fauna.jbrj.gov.br/), made public in 2015, represents a database on biodiversity anchored on a list of valid and expertly recognized scientific names of animals in Brazil. The CTFB is updated in near real time by a team of more than 800 specialists. By January 1, 2024, the CTFB compiled 133,691 nominal species, with 125,138 that were considered valid. Most of the valid species were arthropods (82.3%, with more than 102,000 species) and chordates (7.69%, with over 11,000 species). These taxa were followed by a cluster composed of Mollusca (3,567 species), Platyhelminthes (2,292 species), Annelida (1,833 species), and Nematoda (1,447 species). All remaining groups had less than 1,000 species reported in Brazil, with Cnidaria (831 species), Porifera (628 species), Rotifera (606 species), and Bryozoa (520 species) representing those with more than 500 species. Analysis of the CTFB database can facilitate and direct efforts towards the discovery of new species in Brazil, but it is also fundamental in providing the best available list of valid nominal species to users, including those in science, health, conservation efforts, and any initiative involving animals. The importance of the CTFB is evidenced by the elevated number of citations in the scientific literature in diverse areas of biology, law, anthropology, education, forensic science, and veterinary science, among others.
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- 2024
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19. Synopsis of Brazilian Euphoria Burmeister, 1842 (Scarabaeoidea: Cetoniidae: Cetoniinae: Cetoniini) with description of a new species
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Diego F. Rodrigues, Paschoal C. Grossi, and Fernando Z. Vaz-de-Mello
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Biodiversity ,Coleoptera ,Neotropical region ,Systematics ,Taxonomy ,Zoology ,QL1-991 - Abstract
ABSTRACT The Brazilian species of Euphoria Burmeister are revised. We describe E. euridesi sp. nov., a new species from the Cerrado biome of Brazil, and redescribe E. lurida (Fabricius 1775). Both species are illustrated and diagnostic characters that distinguish them are presented. A key to the seven South american species of Euphoria and observations on the natural history are also given.
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- 2024
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20. Holistic Characterization of MgO-Al2O3, MgO-CaZrO3, and Y2O3-ZrO2 Ceramic Composites for Aerospace Propulsion Systems
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Kateryna O. Shvydyuk, João Nunes-Pereira, Frederico F. Rodrigues, José C. Páscoa, Senentxu Lanceros-Mendez, and Abílio P. Silva
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multifunctional ceramic composites ,aerospace propulsion ,thermal protection systems ,thermal/environmental barrier coatings ,Technology ,Chemical technology ,TP1-1185 - Abstract
Aerospace propulsion systems are among the driving forces for the development of advanced ceramics with increased performance efficiency in severe operation conditions. The conducted research focused on the mechanical (Young’s and shear moduli, flexural strength, hardness, and fracture toughness), thermal (thermal conductivity and coefficient of thermal expansion), and electric (dielectric properties) characterization of MgO-Al2O3, MgO-CaZrO3, and stable YSZ ceramic composites. The experimental results, considering structural and functional traits, underscore the importance of a holistic understanding of the multifunctionality of advanced ceramics to fulfill propulsion system requirements, the limits of which have not yet been fully explored.
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- 2024
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21. A forecasting tool for a hospital to plan inbound transfers of COVID-19 patients from other regions
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Mehmet A. Begen, Felipe F. Rodrigues, Tim Rice, and Gregory S. Zaric
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COVID-19 ,Simulation ,Spreadsheet ,Capacity planning ,Emergency response ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background In April 2021, the province of Ontario, Canada, was at the peak of its third wave of the COVID-19 pandemic. Intensive Care Unit (ICU) capacity in the Toronto metropolitan area was insufficient to handle local COVID patients. As a result, some patients from the Toronto metropolitan area were transferred to other regions. Methods A spreadsheet-based Monte Carlo simulation tool was built to help a large tertiary hospital plan and make informed decisions about the number of transfer patients it could accept from other hospitals. The model was implemented in Microsoft Excel to enable it to be widely distributed and easily used. The model estimates the probability that each ward will be overcapacity and percentiles of utilization daily for a one-week planning horizon. Results The model was used from May 2021 to February 2022 to support decisions about the ability to accept transfers from other hospitals. The model was also used to ensure adequate inpatient bed capacity and human resources in response to various COVID-related scenarios, such as changes in hospital admission rates, managing the impact of intra-hospital outbreaks and balancing the COVID response with planned hospital activity. Conclusions Coordination between hospitals was necessary due to the high stress on the health care system. A simple planning tool can help to understand the impact of patient transfers on capacity utilization and improve the confidence of hospital leaders when making transfer decisions. The model was also helpful in investigating other operational scenarios and may be helpful when preparing for future outbreaks or public health emergencies.
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- 2024
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22. Plasma Actuators Based on Alumina Ceramics for Active Flow Control Applications
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Frederico F. Rodrigues, Kateryna O. Shvydyuk, João Nunes-Pereira, José C. Páscoa, and Abílio P. Silva
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alumina ,ceramic composites ,dielectric barrier discharge ,plasma actuators ,flow control ,Technology ,Chemical technology ,TP1-1185 - Abstract
Plasma actuators have demonstrated great potential for active flow control applications, including boundary layer control, flow separation delay, turbulence control, and aircraft noise reduction. In particular, the material used as a dielectric barrier is crucial for the proper operation of the device. Currently, the variety of dielectrics reported in the literature is still quite restricted to polymers including Kapton, Teflon, poly(methyl methacrylate) (PMMA), Cirlex, polyisobutylene (PIB) rubber, or polystyrene. Nevertheless, several studies have highlighted the fragilities of polymeric dielectric layers when actuators operate at significantly high-voltage and -frequency levels or for long periods. In the current study, we propose the use of alumina-based ceramic composites as alternative materials for plasma actuator dielectric layers. The alumina composite samples were fabricated and characterized in terms of microstructure, electrical parameters, and plasma-induced flow velocity and compared with a conventional Kapton-based actuator. It was concluded that alumina-based dielectrics are suitable materials for plasma actuator applications, being able to generate plasma-induced flow velocities of approximately 4.5 m/s. In addition, it was verified that alumina-based ceramic actuators can provide similar fluid mechanical efficiencies to Kapton actuators. Furthermore, the ceramic dielectrics present additional characteristics, such as high-temperature resistance, which are not encompassed by conventional Kapton actuators, which makes them suitable for high-temperature applications such as turbine blade film cooling enhancement and plasma-assisted combustion. The high porosity of the ceramic results in lower plasma-induced flow velocity and lower fluid mechanical efficiency, but by minimizing the porosity, the fluid mechanical efficiency is increased.
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- 2024
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23. Continual Learning for Object Classification: Integrating AutoML for Binary Classification Tasks Within a Modular Dynamic Architecture
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Daniel Turner, Pedro J. S. Cardoso, and Joao M. F. Rodrigues
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AutoML ,binary classification ,catastrophic forgetting ,computer vision ,continual learning ,neural networks ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
For humans it is quite easy to identify a new object after learning to identify existing ones, but not for a machine. Deep neural networks (DNN) are the foundation of the current state-of-the-art methods for training machines to recognize sets of objects. The issue is that any modification to the DNN weights that were trained to classify an initial set of objects has the potential to seriously impair the network’s ability to make those initial classifications; this behaviour is referred to as catastrophic forgetting (CF). This paper presents a continual learning (CL) architecture that can deal with CF. The architecture is composed of two primary parts: (i) The feature extraction component, which is based on the ResNet50 backbone and (ii) the modular dynamic classification (MDC) component. The latter is made up of multiple sub-networks that gradually assemble themselves into a tree-like structure that reorganizes itself as it learns over time, so that each sub-network can operate independently. The MDC relies heavily on binary classification, and here the application of automated machine learning (AutoML) was introduced, where each binary classifier is tailored on-the-fly, and is/can be different from object to object. The strategy involves a calculated selection from a predefined list of model types and parameters, optimizing them for their respective tasks. Results demonstrate that we advanced the adaptability and performance of the network, emphasizing the transformative potential of AutoML in modular CL approaches. Tests on the CORe50 dataset showed accuracy results of 81.1%, which are above the state of the art for CL architectures.
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- 2024
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24. Neofunctionalization driven by positive selection led to the retention of the loqs2 gene encoding an Aedes specific dsRNA binding protein
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Carlos F. Estevez-Castro, Murillo F. Rodrigues, Antinéa Babarit, Flávia V. Ferreira, Elisa G. de Andrade, Eric Marois, Rodrigo Cogni, Eric R. G. R. Aguiar, João T. Marques, and Roenick P. Olmo
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loqs2 ,RNA interference (RNAi) ,Aedes mosquitoes ,Double-stranded RNA (dsRNA) ,dsRNA binding protein (dsRBP) ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Mosquito borne viruses, such as dengue, Zika, yellow fever and Chikungunya, cause millions of infections every year. These viruses are mostly transmitted by two urban-adapted mosquito species, Aedes aegypti and Aedes albopictus. Although mechanistic understanding remains largely unknown, Aedes mosquitoes may have unique adaptations that lower the impact of viral infection. Recently, we reported the identification of an Aedes specific double-stranded RNA binding protein (dsRBP), named Loqs2, that is involved in the control of infection by dengue and Zika viruses in mosquitoes. Preliminary analyses suggested that the loqs2 gene is a paralog of loquacious (loqs) and r2d2, two co-factors of the RNA interference (RNAi) pathway, a major antiviral mechanism in insects. Results Here we analyzed the origin and evolution of loqs2. Our data suggest that loqs2 originated from two independent duplications of the first double-stranded RNA binding domain of loqs that occurred before the origin of the Aedes Stegomyia subgenus, around 31 million years ago. We show that the loqs2 gene is evolving under relaxed purifying selection at a faster pace than loqs, with evidence of neofunctionalization driven by positive selection. Accordingly, we observed that Loqs2 is localized mainly in the nucleus, different from R2D2 and both isoforms of Loqs that are cytoplasmic. In contrast to r2d2 and loqs, loqs2 expression is stage- and tissue-specific, restricted mostly to reproductive tissues in adult Ae. aegypti and Ae. albopictus. Transgenic mosquitoes engineered to express loqs2 ubiquitously undergo developmental arrest at larval stages that correlates with massive dysregulation of gene expression without major effects on microRNAs or other endogenous small RNAs, classically associated with RNA interference. Conclusions Our results uncover the peculiar origin and neofunctionalization of loqs2 driven by positive selection. This study shows an example of unique adaptations in Aedes mosquitoes that could ultimately help explain their effectiveness as virus vectors.
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- 2024
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25. An Approach Based on LiDAR and Spherical Images for Automated Vegetation Inspection in Urban Power Distribution Lines
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Matheus A. Bergmann, Larissa F. Rodrigues Moreira, Breno Krohling, Thiago L. T. Silveira, Claudio R. Jung, Jianchen Tang, Marcelo Viana Feitosa, Renan Lopes Braga Gomes, and Bruno Niederauer Soares
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Artificial intelligence ,deep learning ,interference detection ,LiDAR ,power distribution ,preventive pruning ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Preventive tree pruning is an efficient way to reduce the risks of outages in the electrical network, such as cable rupture, short circuits, and fires, which may occur due to interferences between vegetation and urban electrical distribution lines. These interferences are listed as one of the main causes of power supply interruptions by distribution companies and, consequently, generate significant financial losses due to the decline in quality indicators and the need for maintenance. Vegetation management inspection is essential to maintain the reliability and continuity of the power distribution, but manual monitoring is expensive, time-consuming, and subjective. This paper proposes a new method based on Deep Learning (DL) and high-resolution sensors for automated vegetation inspection in urban power distribution lines. The method combines Light Detection and Ranging (LiDAR) and spherical images and overcomes the limitations of aerial images using vehicle-borne sensors. The dataset was obtained using the proposed capture system in four Brazilian cities. The results demonstrated the suitability of the proposed method in an innovative way through a proof of concept. Among the main contributions, the functional evaluation of the system for Artificial Intelligence-based real-time vegetation inspection in power line distribution is highlighted. The proposed method achieved high rates of interference identification using a web platform and mobile application (achieving a precision of over 94%). The results demonstrate the potential of the proposed approach for automated vegetation inspection in real-world scenarios and open up opportunities for the deployment and evaluation of large-scale applications.
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- 2024
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26. Fine-Grained Fish Classification From Small to Large Datasets With Vision Transformers
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Ricardo J. M. Veiga and Joao M. F. Rodrigues
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Computer vision ,convolutional neural networks ,fine-grained visual classification ,marine biodiversity monitoring ,swin transformer ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Fish species Fine-Grained Visual Classification (FGVC) is important for ecological research, environmental management, and biodiversity monitoring, as accurate fish species identification is crucial for assessing the health of marine ecosystems, monitoring changes in biodiversity, and converting conservation plans into action. Although Convolutional Neural Network (CNN)s have been the conventional approach for FGVC, their effectiveness in differentiating visually similar species is not always satisfactory. The advent of Vision Transformer (ViT)s, in particular the Shifted window (Swin) Transformer, has demonstrated potential in addressing these issues by using sophisticated self-attention and feature extraction techniques. This paper proposes a method of combining the FGVC Plug-in Module (FGVC-PIM) and the Swin Transformer. The FGVC-PIM improves classification by concentrating on the most discriminative image regions, while the Swin Transformer acts as the framework and provides strong hierarchical feature extraction. The performance of the method was assessed on 14 different datasets, which included 19 distinct subsets with varying environmental conditions and image quality. With the proposed method it was achieved state-of-the-art results in 13 of these subsets, exhibiting better accuracy and robustness than previous methods, in 2 subsets (not yet explored by other authors) new baseline results are presented, and in the remaining 4 it was achieved results always above 83%.
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- 2024
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27. Exploring the Structural Diversity and Biotechnological Potential of the Rhodophyte Phycolectome
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Éllen F. Rodrigues, Flavia Alves Verza, Felipe Garcia Nishimura, Renê Oliveira Beleboni, Cedric Hermans, Kaat Janssens, Maarten Lieven De Mol, Paco Hulpiau, and Mozart Marins
- Subjects
Rhodophyta ,red seaweed ,phycolectome ,lectins ,Biology (General) ,QH301-705.5 - Abstract
Lectins are non-covalent glycan-binding proteins found in all living organisms, binding specifically to carbohydrates through glycan-binding domains. Lectins have various biological functions, including cell signaling, molecular recognition, and innate immune responses, which play multiple roles in the physiological and developmental processes of organisms. Moreover, their diversity enables biotechnological exploration as biomarkers, biosensors, drug-delivery platforms, and lead molecules for anticancer, antidiabetic, and antimicrobial drugs. Lectins from Rhodophytes (red seaweed) have been extensively reported and characterized for their unique molecular structures, carbohydrate-binding specificities, and important biological activities. The increasing number of sequenced Rhodophyte genomes offers the opportunity to further study this rich source of lectins, potentially uncovering new ones with properties significantly different from their terrestrial plant counterparts, thus opening new biotechnological applications. We compiled literature data and conducted an in-depth analysis of the phycolectomes from all Rhodophyta genomes available in NCBI datasets. Using Hidden Markov Models capable of identifying lectin-type domains, we found at least six different types of lectin domains present in Rhodophytes, demonstrating their potential in identifying new lectins. This review integrates a computational analysis of the Rhodophyte phycolectome with existing information on red algae lectins and their biotechnological potential.
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- 2024
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28. Considering Grayscale Process and Material Properties for Robust Multilevel Diffractive Flat Optics
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Diogo E. Aguiam, Ana Dias, Manuel J. L. F. Rodrigues, Aamod Shanker, Filipe Camarneiro, Joana D. Santos, Pablo Valentim, Joao Cunha, and Patrícia C. Sousa
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diffractive optics ,diffraction efficiency ,grayscale lithography ,flat optics ,optimization ,Applied optics. Photonics ,TA1501-1820 - Abstract
Arbitrarily designed flat optics directly manipulate the light wavefront to reproduce complex optical functions, enabling more compact optical assemblies and microsystem integration. Phase-shifting micro-optical devices rely on locally tailoring the optical path length of the wavefront through binary or multilevel surface relief micro- and nanostructures. Considering the resolution and tolerances of the production processes and the optical properties of the substrate and coating materials is crucial for designing robust multilevel diffractive flat optics. In this work, we evaluate the impact of the grayscale laser lithography resolution and geometry constraints on the efficiency of surface-relief diffractive lenses, and we analyze the process parameter space that limit lens performance. We introduce a spectral bandwidth metric to help evaluate the broad-spectrum performance of different materials. We simulate and experimentally observe that the diffractive focusing is dominated by the periodic wavelength-dependent phase discontinuities arising in the profile transitions of multilevel diffractive lenses.
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- 2024
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29. Assessing typhoon-induced compound flood drivers: a case study in Ho Chi Minh City, Vietnam
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F. Rodrigues do Amaral, N. Gratiot, T. Pellarin, and T. A. Tu
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Environmental technology. Sanitary engineering ,TD1-1066 ,Geography. Anthropology. Recreation ,Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
We investigate the most severe rainfall event ever experienced in Ho Chi Minh City (HCMC), Vietnam. It occurred on 25 November 2018 when Typhoon (TY) Usagi directly hit HCMC. During this event, there was more than 300 mm of rainfall over 24 h which led to flooding and considerable material damage. We propose an in-depth study of TY-induced, compound flood drivers at a short timescale by focusing on the days before and after the event. We use a set of data analysis and signal processing tools to characterize and quantify both coastal and inland effects on the hydrosystem. We found that TY Usagi made landfall without forming a significant storm surge. The extreme rainfall does not translate into immediate river discharge but presents a 16 h time lag between peak precipitation and peak residual discharge. Nevertheless, increased river water levels can be seen at both urban and upstream stations with a similar time lag. At the upstream river station, residual discharge represents 1.5 % of available rainwater, and evidence of upstream widespread flooding was found. At the urban river station, we assess the potential surface runoff during the event to be 8.9 % of the upstream residual discharge. However, a time lag in peak river water level and peak rainfall was found and attributed to the combination of high tide and impervious streets which prevented the evacuation of rainwater and resulted in street flooding of up to 0.8 m. Overall, it was found that despite not having a significant storm surge, the coastal tidal forcing is the predominant compound flood driver even during severe, heavy rainfall with tidal fluctuations in river water level and respective discharge much larger than the residuals.
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- 2023
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30. Green SPIONs as a novel highly selective treatment for leishmaniasis: an in vitro study against Leishmania amazonensis intracellular amastigotes
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Brunno R. F. Verçoza, Robson R. Bernardo, Luiz Augusto S. de Oliveira, and Juliany C. F. Rodrigues
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coconut water ,leishmaniasis ,leishmania amazonensis ,nanomedicine ,spions ,Technology ,Chemical technology ,TP1-1185 ,Science ,Physics ,QC1-999 - Abstract
The main goal of this work was to evaluate the therapeutic potential of green superparamagnetic iron oxide nanoparticles (SPIONs) produced with coconut water for treating cutaneous leishmaniasis caused by Leishmania amazonensis. Optical and electron microscopy techniques were used to evaluate the effects on cell proliferation, infectivity percentage, and ultrastructure. SPIONs were internalized by both parasite stages, randomly distributed in the cytosol and located mainly in membrane-bound compartments. The selectivity index for intracellular amastigotes was more than 240 times higher compared to current drugs used to treat the disease. The synthesized SPIONs showed promising activity against Leishmania and can be considered a strong candidate for a new therapeutic approach for treating leishmaniases.
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- 2023
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31. Gene Expression Divergence in Eugenia uniflora Highlights Adaptation across Contrasting Atlantic Forest Ecosystems
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Andreia C. Turchetto-Zolet, Fabiano Salgueiro, Frank Guzman, Nicole M. Vetö, Nureyev F. Rodrigues, Natalia Balbinott, Marcia Margis-Pinheiro, and Rogerio Margis
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Neotropics ,Atlantic Forest ,abiotic stress ,local adaptation ,Myrteae tribe ,environmental changes ,Botany ,QK1-989 - Abstract
Understanding the evolution and the effect of plasticity in plant responses to environmental changes is crucial to combat global climate change. It is particularly interesting in species that survive in distinct environments, such as Eugenia uniflora, which thrives in contrasting ecosystems within the Atlantic Forest (AF). In this study, we combined transcriptome analyses of plants growing in nature (Restinga and Riparian Forest) with greenhouse experiments to unveil the DEGs within and among adaptively divergent populations of E. uniflora. We compared global gene expression among plants from two distinct ecological niches. We found many differentially expressed genes between the two populations in natural and greenhouse-cultivated environments. The changes in how genes are expressed may be related to the species’ ability to adapt to specific environmental conditions. The main difference in gene expression was observed when plants from Restinga were compared with their offspring cultivated in greenhouses, suggesting that there are distinct selection pressures underlying the local environmental and ecological factors of each Restinga and Riparian Forest ecosystem. Many of these genes engage in the stress response, such as water and nutrient transport, temperature, light intensity, and gene regulation. The stress-responsive genes we found are potential genes for selection in these populations. These findings revealed the adaptive potential of E. uniflora and contributed to our understanding of the role of gene expression reprogramming in plant evolution and niche adaptation.
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- 2024
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32. Multimodal Sentiment Classifier Framework for Different Scene Contexts
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Nelson Silva, Pedro J. S. Cardoso, and João M. F. Rodrigues
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sentiment analysis ,affective computing ,human-centered AI ,Multimodal Sentiment Classifier ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Sentiment analysis (SA) is an effective method for determining public opinion. Social media posts have been the subject of much research, due to the platforms’ enormous and diversified user bases that regularly share thoughts on nearly any subject. However, on posts composed by a text–image pair, the written description may or may not convey the same sentiment as the image. The present study uses machine learning models for the automatic sentiment evaluation of pairs of text and image(s). The sentiments derived from the image and text are evaluated independently and merged (or not) to form the overall sentiment, returning the sentiment of the post and the discrepancy between the sentiments represented by the text–image pair. The image sentiment classification is divided into four categories—“indoor” (IND), “man-made outdoors” (OMM), “non-man-made outdoors” (ONMM), and “indoor/outdoor with persons in the background” (IOwPB)—and then ensembled into an image sentiment classification model (ISC), that can be compared with a holistic image sentiment classifier (HISC), showing that the ISC achieves better results than the HISC. For the Flickr sub-data set, the sentiment classification of images achieved an accuracy of 68.50% for IND, 83.20% for OMM, 84.50% for ONMM, 84.80% for IOwPB, and 76.45% for ISC, compared to 65.97% for the HISC. For the text sentiment classification, in a sub-data set of B-T4SA, an accuracy of 92.10% was achieved. Finally, the text–image combination, in the authors’ private data set, achieved an accuracy of 78.84%.
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- 2024
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33. Antimicrobial Efficacy of Chemomechanical Carie Removal Agents—A Systematic Integrative Review
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Adélaïde Janvier, Marie Maziere, Célia F. Rodrigues, Ana Paula Lobo, and Paulo Rompante
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dental caries ,minimal invasive ,chemomechanical caries removal system ,antimicrobial efficacy ,Biology (General) ,QH301-705.5 - Abstract
Background: Dental caries is the most common oral disease in the world. When treatable, the drilling method continues to be used. This technique has its disadvantages because it is invasive and nonspecific. Chemomechanical carious tissue removal agents (CCRAs) such as Carisolv™ or Papacarie® are non-invasive products that allow for the specific elimination of infected dentin. On the other hand, cariogenic bacteria are largely responsible for the initiation and development of lesions. Objectives: The aim is to analyze whether CCRAs have a relevant antimicrobial effect on cariogenic bacteria. Methods: A bibliographic search strategy was carried out in online databases using PRISMA 2020. The evaluation of the antibacterial efficacy of CCRAs was carried out through the analysis of the reduction in CFUs of cariogenic bacteria, and the presence of bacterial deposits, TVC, SVC and LVC by comparison with conventional drilling methods. Results: The results showed that the percentage of reduction in TVC, SVC and LVC for each agent is mostly high, but not significantly different from mechanical methods. The best results were found with CCRAs when compared to polymeric drills. The results also showed that there is a lack of methodological standardization. Conclusions: CCRAs have been shown to have a relevant antimicrobial effect on cariogenic bacteria; however, more studies need to be carried out using standardized methodologies.
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- 2024
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34. IL-1 Receptor Contributes to the Maintenance of the Intestinal Barrier via IL-22 during Obesity and Metabolic Syndrome in Experimental Model
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Melissa S. G. Machado, Vanessa F. Rodrigues, Sara C. Barbosa, Jefferson Elias-Oliveira, Ítalo S. Pereira, Jéssica A. Pereira, Thaílla C. F. Pacheco, and Daniela Carlos
- Subjects
IL-1R1 ,obesity ,metabolic syndrome ,IL-22 ,ILC3 ,gut permeability ,Biology (General) ,QH301-705.5 - Abstract
Intestinal permeability and bacterial translocation are increased in obesity and metabolic syndrome (MS). ILC3 cells contribute to the integrity of intestinal epithelium by producing IL-22 via IL-1β and IL-23. This study investigates the role of IL-1R1 in inducing ILC3 cells and conferring protection during obesity and MS. For this purpose, C57BL/6 wild-type (WT) and IL-1R1-deficient mice were fed a standard diet (SD) or high-fat diet (HFD) for 16 weeks. Weight and blood glucose levels were monitored, and adipose tissue and blood samples were collected to evaluate obesity and metabolic parameters. The small intestine was collected to assess immunological and junction protein parameters through flow cytometry and RT-PCR, respectively. The intestinal permeability was analyzed using the FITC-dextran assay. The composition of the gut microbiota was also analyzed by qPCR. We found that IL-1R1 deficiency exacerbates MS in HFD-fed mice, increasing body fat and promoting glucose intolerance. A worsening of MS in IL-1R1-deficient mice was associated with a reduction in the ILC3 population in the small intestine. In addition, we found decreased IL-22 expression, increased intestinal permeability and bacterial translocation to the visceral adipose tissue of these mice compared to WT mice. Thus, the IL-1R1 receptor plays a critical role in controlling intestinal homeostasis and obesity-induced MS, possibly through the differentiation or activation of IL-22-secreting ILC3s.
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- 2024
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35. Harnessing AI and NLP Tools for Innovating Brand Name Generation and Evaluation: A Comprehensive Review
- Author
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Marco Lemos, Pedro J. S. Cardoso, and João M. F. Rodrigues
- Subjects
brandability ,brand name generation ,brand name evaluation ,artificial intelligence ,natural language processing ,Technology ,Science - Abstract
The traditional approach of single-word brand names faces constraints due to trademarks, prompting a shift towards fusing two or more words to craft unique and memorable brands, exemplified by brands such as SalesForce© or SnapChat©. Furthermore, brands such as Kodak©, Xerox©, Google©, Häagen-Dazs©, and Twitter© have become everyday names although they are not real words, underscoring the importance of brandability in the naming process. However, manual evaluation of the vast number of possible combinations poses challenges. Artificial intelligence (AI), particularly natural language processing (NLP), is emerging as a promising solution to address this complexity. Existing online brand name generators often lack the sophistication to comprehensively analyze meaning, sentiment, and semantics, creating an opportunity for AI-driven models to fill this void. In this context, the present document reviews AI, NLP, and text-to-speech tools that might be useful in innovating the brand name generation and evaluation process. A systematic search on Google Scholar, IEEE Xplore, and ScienceDirect was conducted to identify works that could assist in generating and evaluating brand names. This review explores techniques and datasets used to train AI models as well as strategies for leveraging objective data to validate the brandability of generated names. Emotional and semantic aspects of brand names, which are often overlooked in traditional approaches, are discussed as well. A list with more than 75 pivotal datasets is presented. As a result, this review provides an understanding of the potential applications of AI, NLP, and affective computing in brand name generation and evaluation, offering valuable insights for entrepreneurs and researchers alike.
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- 2024
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36. Are Mouthwashes Really Effective against Candida spp.?
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Marie Maziere, Paulo Rompante, José Carlos Andrade, and Célia F. Rodrigues
- Subjects
antifungal agents ,oral candidiasis ,mouthwash ,chlorhexidine digluconate ,cetylpyridinium chloride ,biomedical and dental materials ,Biology (General) ,QH301-705.5 - Abstract
Oral candidiasis is an opportunistic infection caused by fungi of the genus Candida. Nystatin, fluconazole, and miconazole are the most widely used antifungal drugs in dentistry, but in recent years, they have been shown to be less effective due to the increase in the resistance to antifungal drugs. The growing challenge of antifungal resistance emphasizes the importance of exploring not only alternative strategies in the fight against Candida spp. infections but also supportive treatment for pharmacological treatment for oral candidiasis. This review aims to evaluate and compare the in vitro reports on antifungal efficacy against Candida spp. exhibited by mouthwashes distributed on the European market. The research question was elaborated through the PEO framework recommended by PRISMA 2020. A bibliographic search strategy was developed for the scientific online databases Pubmed and ScienceDirect. According to the eligibility criteria, 21 papers were included in this study over a 27-year period. Mouthwashes containing chlorhexidine digluconate, cetylpyridinium chloride, hexetidine, and fluorine compounds among others, and natural antimicrobials, such as menthol, thymol, eucalyptol, and Glycyrrhiza glabra extracts, have demonstrated antifungal effectiveness. Nonetheless, the methodological variance introduces ambiguity concerning the comparative efficacy of distinct molecules or mouthwash formulations and complicates the evaluation and the comparison of results between studies. Some mouthwashes commercially available in Europe have the potential to be used in anti-Candida therapy and prevention since they have shown antifungal effect.
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- 2024
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37. Contribution by Giant petrels and Brown skuas to soil phosphatization in Harmony Point - Maritime Antarctica
- Author
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WILLIAM F. RODRIGUES, FÁBIO S. DE OLIVEIRA, CARLOS ERNESTO G.R. SCHAEFFER, MARIÂNGELA G.P. LEITE, and ISABELA C. TORRES
- Subjects
Ornithogenic soils ,Nests of Giant petrels and Brown skuas ,Non-penguin nidification ,Nelson Island ,Science - Abstract
Abstract This research was conducted for the purpose to evaluate the contribution Giant petrels and Brown skuas nestings in the formation of ornithogenic soils by the phosphatization process in Harmony Point, Maritime Antarctic. Ten nests were selected to collect topsoil samples (0-20 cm), from 0 m up to 20 m away, with regular spacing of 2 m. The analysis of the samples included the physical, chemical, mineralogical and geochemical analyzes. Phosphate minerals were identified. The presence of high content of some trace elements, such as Zn, Cu and Sr is associated with the bird’s excrements. Total-P and bioavailable-P recorded higher levels. This result demonstrates the importance of the time factor in the bird’s nesting, as well as in the development of the soil in these soil-forming environment. Phosphatization in these areas is not restricted to the specific location of the nest, since high values of P have been identified at distances between 8 and 12 m, from de nest’s top. This suggests the transport of P rich solutions and phosphatized material along fractures by the freeze-thaw cycles, contributing to increase the geographical expression of this phenomenon in this ice-free area, consequently the development of soils and the establishment of vegetation.
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- 2024
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38. Correction: Mindfulness-Based Cognitive Therapy for Treatment-Resistant Depression: A protocol for systematic review and meta-analysis.
- Author
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Michele F Rodrigues, Larissa Junkes, Jose Appolinario, and Antonio E Nardi
- Subjects
Medicine ,Science - Abstract
[This corrects the article DOI: 10.1371/journal.pone.0306227.].
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- 2024
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39. Spectroelectrochemistry for determination of the redox potential in heme enzymes: Dye-decolorizing peroxidases
- Author
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Catarina Barbosa, Carolina F. Rodrigues, Nikola Lončar, Lígia O. Martins, Smilja Todorovic, and Célia M. Silveira
- Subjects
Heme proteins ,Redox potential ,Spectroelectrochemistry ,Dye decolorizing peroxidases ,Biochemistry ,QD415-436 ,Genetics ,QH426-470 - Abstract
Dye-decolorizing peroxidases (DyPs) are heme-containing enzymes that are structurally unrelated to other peroxidases. Some DyPs show high potential for applications in biotechnology, which critically depends on the stability and redox potential (E°') of the enzyme. Here we provide a comparative analysis of UV–Vis- and surface-enhanced resonance Raman-based spectroelectrochemical methods for determination of the E°' of DyPs from two different organisms, and their variants generated targeting E°' upshift. We show that substituting the highly conserved Arginine in the distal side of the heme pocket by hydrophobic amino acid residues impacts the heme architecture and redox potential of DyPs from the two organisms in a very distinct manner. We demonstrate the advantages and drawbacks of the used spectroelectrochemical approaches, which is relevant for other heme proteins that contain multiple heme centers or spin populations.
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- 2024
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40. Mindfulness-Based Cognitive Therapy for Treatment-Resistant Depression: A protocol for systematic review and meta-analysis.
- Author
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Michele F Rodrigues, Larissa Junkes, Jose Appolinario, and Antonio E Nardi
- Subjects
Medicine ,Science - Abstract
BackgroundMajor Depressive Disorder (MDD) is a global health issue, and a significant portion of individuals with MDD experience Treatment-Resistant Depression (TRD), characterized by the lack of response to adequately trialed antidepressant medication and therapy. This systematic review aims to investigate the effectiveness of Mindfulness-Based Cognitive Therapy (MBCT) as an intervention for individuals with TRD.Materials and methodsWe will conduct a thorough search for publications of randomized clinical trials and quasi-experimental studies in MEDLINE, Embase, PsycINFO, Web of Science databases, and ClinicalTrials.gov. Furthermore, reference lists of included studies will be manually screened for additional relevant articles, with no restrictions on language or publication date. The search will be conducted from the inception of the databases until June 2024. Our PICO-guided research questions are: (1) In adults with Treatment-Resistant Depression, is MBCT more effective than standard care or other active treatments in reducing depressive symptoms? (2) In adults with Treatment-Resistant Depression, does MBCT demonstrate a comparable safety profile to standard care or other active treatments? The quality of the included studies will be assessed independently using the Cochrane Risk of Bias Tool (RoB 2). This study seeks to evaluate the effectiveness and tolerability of Mindfulness-Based Cognitive Therapy as an intervention for Treatment-Resistant Depression, and will employ the Grading of Recommendations Assessment, Development, and Evaluation (GRADE) methodology to appraise the confidence in the evidence.Prospero registrationProspero registration ID: CRD42023411978. Registered on April 07, 2023.
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- 2024
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41. Friction riveting of FR4 substrates for printed circuit boards: Influence of process parameters on process temperature development and joint properties
- Author
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Camila F. Rodrigues, Lucian Blaga, and Benjamin Klusemann
- Subjects
Printed circuit board ,FR4 ,Friction riveting ,Hybrid materials ,Joint formation ,Mining engineering. Metallurgy ,TN1-997 - Abstract
This work investigates the influence of Friction Riveting processing conditions on FR4-PCB substrate/AA2024 rivet joints in terms of process temperature evolution, joint formation, and joint physical-chemical and mechanical properties. The joints were manufactured using 4 mm diameter AA-2024-T3 rivets and FR4 laminates of 1.5 mm thickness with single or double copper-clad layers. The evolution of process temperature evolution was recorded on the FR4 substrate surface and correlated with the resulting joint formation. Most joints obtained with double copper clad layers developed process temperatures above 300 °C, whereas joints produced with a single copper clad presented slightly lower temperatures, but still above 250 °C. Rivet anchoring was achieved for both FR4 material combinations in the configuration of a single-base laminate, as well as two and even three overlapped laminates. Thermogravimetric analyses revealed that above 300 °C intensive thermal degradation occurs on FR4 materials (with 30% mass change), followed by decomposition, resulting in non-uniform heat distribution throughout the thickness. The joint ultimate tensile force was higher for double copper-clad layers and the joints achieved within more than one laminate, showing higher anchoring efficiency.
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- 2023
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42. Synthesis of delafossite CuCrO2 via solution combustion method and its acid functionalization for biodiesel production
- Author
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M. C. Viegas, G. P. de Figueredo, S. F. Rodrigues, A. A. Cabral, M. A. M. Castro, and M. M. Oliveira
- Subjects
delafossite ,solution combustion synthesis ,heterogeneous catalyst ,transesterification reaction ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Abstract CuCrO2 was synthesized by solution combustion synthesis (SCS) and applied as a heterogeneous catalyst to produce soybean biodiesel. The combustion reaction was carried out using urea as a fuel, and copper (II) and chromium (III) nitrates as precursors. After the powders’ obtention, these were calcined and functionalized in an acidic medium. The powders were characterized by thermogravimetry (TG), X-ray diffraction (XRD), scanning electron microscopy (SEM), and infrared spectroscopy (IR) techniques. The TG curve revealed that the formation of the CuCrO2 in the combustion reaction remained stable up to 1000 °C. The XRD results confirmed the formation of the CuCrO2 compound. The SEM images showed that the crystallinity of the samples increased after the calcination process. The IR spectra showed the presence of delafossite characteristic bands. After the transesterification reaction, biodiesel was obtained with a yield of around 80%. Thus, catalysts based on delafossite synthesized through the combustion method and functionalized showed to be promising for the transesterification reaction of vegetable oils.
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- 2023
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43. Age-related accumulation of B-1 cell progenitors in mice reflects changes in miR15a/16-1 expression and radioresistance capacity
- Author
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Olívia F Souza, Vivian C de Oliveira, Gabriel J. F. Rodrigues, Lucas V. S. Costa, Fernanda Corado, and Ana F. Popi
- Subjects
B-1 cell progenitor ,miR15a/16-1 ,Chronic Lymphocytic Leukemia ,Apoptosis ,Radioresistance ,Diseases of the blood and blood-forming organs ,RC633-647.5 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Hyperproliferative diseases such as Chronic Lymphocytic Leukemia (CLL) and Systemic Lupus Erythematosus (SLE) are potentially related to some disturbance in the apoptosis pathway, specifically in B-1a cells (CD5+). Accumulation of B-1a cells in lymphoid organs, bone marrow or periphery is observed in some leukemia experimental murine models along aging. It is known that aging also increases the healthy B-1 cell population. However, it is not yet clear if it happens due to self-renewal of mature cells or proliferation of progenitor cells. Herein we demonstrated that the B-1 cell precursor population (B-1p) from bone marrow of middle-aged mice is higher than from young mice. Also, these aged cells are more resistant to irradiation and have downregulation of microRNA15a/16. Alterations in these microRNAs expression and in Bcl-2 regulation were already described in human hematological malignancies and new therapeutically approaches focus on that axis. This finding could explain the early events related to cell transformation during aging and correlate with beginning of symptoms in hyperproliferative diseases. Moreover, studies have already reported these pro-B-1 as a contributor to the origin of other leukemia (Acute Myeloid Leukemia - AML). Our results point to a possible relation between B-1 cell precursors and hyperproliferation during aging. We hypothesized that this population could be maintained until the mature status of the cell or reveal changes that result in re-activation of precursor in adult bone marrow, culminating in accumulation of B-1 cells later. Based on this, B-1 cell progenitor could represent an origin for B cell malignancies and a new candidate target to diagnose and treatments in the future.
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- 2023
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44. Gravity complexes as a focus of seafloor fluid seepage: the Rio Grande Cone, SE Brazil
- Author
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M. Ketzer, D. Praeg, A. H. Augustin, L. F. Rodrigues, A. K. Steiger, M. Rahmati-Abkenar, A. R. Viana, D. J. Miller, A. Malinverno, G. R. Dickens, and J. A. Cupertino
- Subjects
Medicine ,Science - Abstract
Abstract Seafloor methane emissions can affect Earth’s climate and ocean chemistry. Vast quantities of methane formed by microbial decomposition of organic matter are locked within gas hydrate and free gas on continental slopes, particularly in large areas with high sediment accumulations such as deep-sea fans. The release of methane in slope environments has frequently been associated with dissociation of gas hydrates near the edge of the gas hydrate stability zone on the upper slope, with discharges in greater water depths less understood. Here we show, using data from the Rio Grande Cone (western South Atlantic), that the intrinsic, gravity-induced downslope collapse of thick slope sediment accumulations creates structures that serve as pathways for gas migration, unlocking methane and causing seafloor emissions via giant gas flares in the water column. The observed emissions in the study region (up to 310 Mg year−1) are three times greater than estimates for the entire US North Atlantic margin and reveal the importance of collapsing sediment accumulations for ocean carbon cycling. Similar outgassing systems on the Amazon and Niger fans suggest that gravity tectonics on passive margins is a common yet overlooked mechanism driving massive seafloor methane emissions in sediment-laden continental slopes.
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- 2023
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45. Review of Ceramic Composites in Aeronautics and Aerospace: A Multifunctional Approach for TPS, TBC and DBD Applications
- Author
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Kateryna O. Shvydyuk, João Nunes-Pereira, Frederico F. Rodrigues, and Abílio P. Silva
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thermal protection systems ,thermal barrier coatings ,dielectric barrier discharge ,structural ceramics ,multifunctional ceramics ,Technology ,Chemical technology ,TP1-1185 - Abstract
The quest for increased performance in the aeronautical and aerospace industries has provided the driving force and motivation for the research, investigation, and development of advanced ceramics. Special emphasis is therefore attributed to the ability of fine ceramics to fulfill an attractive, extreme, and distinguishing combination of application requirements. This is impelled by ensuring a suitable arrangement of thermomechanical, thermoelectric, and electromechanical properties. As a result, the reliability, durability, and useful lifetime extension of a critical structure or system are expected. In this context, engineered ceramic appliances consist of three main purposes in aeronautical and aerospace fields: thermal protection systems (TPS), thermal protection barriers (TBC), and dielectric barrier discharge (DBD) plasma actuators. Consequently, this research provides an extensive discussion and review of the referred applications, i.e., TPS, TBC, and DBD, and discusses the concept of multifunctional advanced ceramics for future engineering needs and perspectives.
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- 2023
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46. Ocean-atmosphere turbulent CO2 fluxes at Drake Passage and Bransfield Strait
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CELINA CÂNDIDA F. RODRIGUES, MARCELO F. SANTINI, LUCIANA S. LIMA, UESLEI ADRIANO SUTIL, JONAS T. CARVALHO, MYLENE JEAN CABRERA, ELIANA B. ROSA, JACOB W. BURNS, and LUCIANO P. PEZZI
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carbon flux ,sea-air interaction ,carbon sinks ,Antarctic Peninsula ,Science - Abstract
Abstract The oceans play an important role in mitigating climate change by acting as large carbon sinks, especially at high latitude regions. The Southern Ocean plays a major role in the global carbon dioxide (CO2) budget. This work aims to investigate the behavior of turbulent CO2 fluxes and quantify it under different atmospheric and oceanic conditions in the Drake Passage and Bransfield Strait regions on high spatiotemporal resolutions when compared with traditional CO2 fluxes estimations. The atmospheric stability condition was used to corroborate the description of CO2 fluxes. In situ, satellite, and reanalysis data from 08 to 22 November 2018, were used in this work. The Bransfield Strait uptaked 38.59% more CO2 than the Drake Passage due to the cold and fresh waters, allied to the influence of glacial meltwater dilution. Which increased the CO2 solubility, directing the CO2 fluxes to the ocean. The Bransfield Strait had predominantly stable atmospheric conditions, which contributed to this region acting as a CO2 sink. The Drake Passage, on average, behaved as a CO2 sink, mainly due to physical characteristics. This research contributes to a better understanding of the Southern Ocean’s role in the global carbon balance on scales that are very difficult to monitor.
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- 2023
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47. SOIL-LANDSCAPE RELATIONSHIP IN A WATERSHED LOCATED ON PLEISTOCENIC TERRACES AND FLUVIO-LAGUNARIAN SEDIMENTS IN MUNICIPALITY OF RECIFE, BRAZIL
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Anildo M. Caldas, Fernando C. Rolim Neto, Roberto da Boa Viagem Parahyba, Marcus M. Corrêa, and Adriana de C. F. Rodrigues
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SiBCS ,Ferralsols ,Barreiras group ,soil map ,Agriculture (General) ,S1-972 - Abstract
ABSTRACT In the Prata watershed there are units corresponding to the Pleistocene Terraces and the Fluvium-Lagoon Sediments. This watershed is inserted almost entirely in the area of plateaus (Tabuleiros) with altitudes of 10 to 100 meters, and in areas with altitudes of 2 to 10 meters in the area of floodplains and fluvio-lagoon terraces. The present work aimed to characterize and classify soils in the Brazilian Soil Classification System - SiBCS and correlate them with the IUSS Working Group WRB-FAO (in parentheses), besides evidence some soil-landscape relations, that occur in Pleistocene terraces and fluvium-lagoon sediments in the Prata watershed, located in the ecological reserve of Dois Irmãos State Park in Recife – PE, Brazil. Soil samples were used to perform physical, chemical and mineralogical analysis in laboratory. Watershed delimitation, Digital Elevation Model (DEM), slope map, soil map and slope x soil map were obtained and studied. The soils are quite acidic and have a very low natural fertility, with the Latossolos (Ferralsols) predominating in the landscape. The silt and clay fractions of the studied Argissolos (Acrisols) and Latossolos (Ferralsols) presented quartz and kaolinite as the main component. In the profile of Neossolo Quartzarênico (Arenosols) only quartz was identified as a component of the silt and clay fractions. The kaolinitic mineralogy of the clay fraction is consistent with the environment of its formation, that is, hot and humid. There is no relationship between the colors of soils and their exposure to the sun on the slopes where they occur. The occurrence of a sandy and whitish horizon between the litter and the A horizon, is not foreseen in the norms and criteria adopted in the Brazilian Soil Classification System - SiBCS.
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- 2023
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48. Global methylation in ‘Valencia’ orange seedlings associated with rootstocks and Huanglongbing
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M. G. F. Rodrigues, E. S. Nakanishi, R. V. G. Soutello, and F. O. N. H. Diniz
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epigenetics ,citrus culture ,phenotypic plasticity ,Science ,Biology (General) ,QH301-705.5 ,Zoology ,QL1-991 ,Botany ,QK1-989 - Abstract
Abstract Citrus farming is one of the main activities that contributed to the Brazilian trade balance, with citrus seedling being the most important input in the formation of orchards to guarantee high productivity and fruit quality, which fundamentally depends on the chosen genetics. The present study aimed to analyze the existence of epigenetic variability in ‘Valencia’ orange plants on rootstocks, associated or not with HLB, through the quantification of the global methylation of its genome, in order to support works on genetic improvement and crop production. For this purpose, this work was carried out in greenhouse in a completely randomized experimental design, with 5 treatments and 6 replicates per treatment, each seedling being considered a replicate, namely: T1 = “Valencia” orange grafted onto “Rangpur” lemon, inoculated with HLB; T2 = “Valencia” orange grafted onto “Swingle” citrumelo, inoculated with HLB; T3 = “Valencia” orange grafted onto “Rangpur” lemon, without HLB inoculation ; T4 = “Valencia” orange grafted onto “Swingle” citrumelo, without HLB inoculation ; T5 = “Valencia” orange in free standing. The DNA was extracted from leaves and the ELISA test (Enzyme-Linked Immunosorbent Assay) was carried out, based on the use of receptors sensitive to 5-mC., to measure the relative quantification of global methylation between genomic orange DNAs . Since the control treatment (T5) consists of “Valencia” orange in free standing, it could be inferred that both the normal grafting technique in the seedling formation process and the inoculation of buds infected with HLB are external factors capable of changing the methylation pattern in the evaluated plants, including the DNA demethylation process, causing an adaptive response in association with the expression of genes previously silenced by genome methylation.
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- 2023
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49. 1305 Agreement and reliability of an automated PD-L1 tumor proportion scoring algorithm in non-small cell lung cancer (NSCLC)
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Inti Zlobec, David Dorward, Samuel Pattle, Daniela F Rodrigues, Christina Neppl, Tereza Losmanová, Rebecca Wyatt, Donna Mulkern, Raphaël Oberson, Stefan Reinhard, Therese Waldburger, and Peter Caie
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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50. Removing heavy metal ions from wastewater by Chlorella sorokiniana coupled to manganese-doped magnetic ferrite nanoparticles
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Louie A. Lapeñas, Janire Peña-Bahamonde, Lúrima Uane Soares Faria, Mark Daniel G. de Luna, and Debora F. Rodrigues
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Chlorella sorokiniana ,Manganese ferrite ,Biosorption ,Heavy metal removal ,Hazardous substances and their disposal ,TD1020-1066 - Abstract
In this study, we investigated the benefit of combining Chlorella sorokiniana with manganese-containing ferrite nanoparticles (NPs) for heavy metal removal and cell harvesting. Our results demonstrate that the combination of non-toxic nanoparticles significantly enhances the heavy metal removal capacity of C. sorokiniana without affecting its growth. The microalgae combined with NPs was able to sequester Cr6+, Co2+, and Ni2+ from aqueous solutions and could remove these metals at a higher adsorption capacity and within a relatively short time than their individual counterparts, indicating a synergistic effect between the algal cells and the nanomaterials, where bioadsorption and chemisorption were the main players. Both biosorption and chemisorption capacities were found to be the highest for single-metal systems and decreased when coexisting ions were present in the solution. The adsorption of the heavy metals evaluated was better described by the pseudo-second order model than the pseudo-first order model, indicating that chemisorption dominated over physisorption. These characteristics suggest that the combination of biosorbents with nanosorbents is a promising approach for the treatment of water contaminated with heavy metals making this process more efficient, economical, sustainable, and clean.
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- 2023
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