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A novel mesophilic bacterial strain, designated S502T, was isolated from a deep-sea hydrothermal vent at Suiyo Seamount, Japan. Cells were Gram-positive, asporogenous, motile, and curved rods, measuring 1.6–5.6 µm in length. The strain was an obligate anaerobe that grew fermentatively on complex substrates such as yeast extract and Bacto peptone. Elemental sulfur stimulated the growth of the strain, and was reduced to hydrogen sulfide. The strain grew within a temperature range of 10–23 °C (optimum at 20 °C), pH range of 4.8–8.3 (optimum at 7.4), and a NaCl concentration range of 1.0–4.0% (w/v) (optimum at 3.0%, w/v). Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolate was a member of the class Clostridia, with Fusibacter paucivorans strain SEBR 4211T (91.1% sequence identity) being its closest relative. The total size of the genome of the strain was 3.12 Mbp, and a G + C content was 28.2 mol%. The highest values for average nucleotide identity (ANI), average amino acid identity (AAI), and digital DNA-DNA hybridization (dDDH) value of strain S502T with relatives were 67.5% (with Marinisporobacter balticus strain 59.4MT), 51.5% (with M. balticus strain 59.4MT), and 40.9% (with Alkaliphilus serpentinus strain LacTT), respectively. Based on a combination of phylogenetic, genomic, and phenotypic characteristics, we propose strain S502T to represent a novel genus and species, Helicovermis profundi gen. nov., sp. nov., with the type strain S502T (= DSM 112048T = JCM 39167T). [ABSTRACT FROM AUTHOR]

Electric discharge in deep-sea hydrothermal fields leads us to expect the existence of electroactive microbial ecosystems in the environments. Electrochemical properties such as electric field distribution on the seafloor and electrical conductivity of the rock can be useful indicators of searching electroactive microbial community in natural environments. We performed electric field measurements in deep-sea hydrothermal fields and collected rock samples by a remotely operative vehicle (ROV) operation. Several spots on the seafloor with strong electric fields were detected, which included both active hydrothermal vent areas and inactive sulfide deposits far from the vents. The electrical conductivity of the rock samples was correlated with the copper and iron sulfide content. Microbial community compositions of the rock samples were characterized by small subunit (SSU) rRNA gene amplicon sequencing analysis. The abundance of several microbial components, which are highly related to electroactive microorganisms such as Geobacteraceae and Thiomicrorhabdus, was affected by the electrical properties of rock samples. The results suggested that electrochemical properties on the seafloor would be related to the abundance of possible electroactive microbial populations, and that the electrochemical survey may be a powerful tool for exploring electroactive ecosystems. [ABSTRACT FROM AUTHOR]

Deep‐sea chemosynthetic ecosystems are 'oases' of life powered by reducing geofluids, of which serpentinite‐hosted seeps are among the least studied. South Chamorro Seamount, a serpentine mud volcano on the Mariana Arc, has been known to host chemosynthesis‐based assemblages since 1996, but no detailed information on the fauna was published. Here, we revisited South Chamorro to characterise its biodiversity. We located two regions of chemosynthetic communities dominated by bathymodioline mussels, vesicomyid clams, and chaetopterid parchment worms: one on the northwestern flank ('Fryer Site') and one on the southern summit ('Summit Site'). We sampled a total of 20 species including 13 molluscs, five annelids, and two crustaceans – all present on the more active Summit Site but only a subset being found at Fryer Site. A mussel bed surrounding the Fryer Site was drilled by the Ocean Drilling Program in 2001 resulting in six holes, the deepest being 266 m (Hole 1200C). Cuttings ~50 cm deep still cover an approximately 60 m radius around Hole 1200C even 22 years later, and there is no sign of recovery. Low geofluid supply in serpentinite‐hosted seamounts may not allow decadal recovery of animal colonies, unlike a previous drilling site in an Okinawa Trough vent. [ABSTRACT FROM AUTHOR]

A novel mesophilic bacterial strain, designated S502T, was isolated from a deep-sea hydrothermal vent at Suiyo Seamount, Japan. Cells were Gram-positive, asporogenous, motile, and curved rods, measuring 1.6–5.6 µm in length. The strain was an obligate anaerobe that grew fermentatively on complex substrates such as yeast extract and Bacto peptone. Elemental sulfur stimulated the growth of the strain, and was reduced to hydrogen sulfide. The strain grew within a temperature range of 10–23 °C (optimum at 20 °C), pH range of 4.8–8.3 (optimum at 7.4), and a NaCl concentration range of 1.0–4.0% (w/v) (optimum at 3.0%, w/v). Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolate was a member of the class Clostridia, with Fusibacter paucivorans strain SEBR 4211T (91.1% sequence identity) being its closest relative. The total size of the genome of the strain was 3.12 Mbp, and a G + C content was 28.2 mol%. The highest values for average nucleotide identity (ANI), average amino acid identity (AAI), and digital DNA-DNA hybridization (dDDH) value of strain S502T with relatives were 67.5% (with Marinisporobacter balticus strain 59.4MT), 51.5% (with M. balticus strain 59.4MT), and 40.9% (with Alkaliphilus serpentinus strain LacTT), respectively. Based on a combination of phylogenetic, genomic, and phenotypic characteristics, we propose strain S502T to represent a novel genus and species, Helicovermis profundi gen. nov., sp. nov., with the type strain S502T (= DSM 112048T = JCM 39167T). [ABSTRACT FROM AUTHOR]

A novel mesophilic bacterial strain, designated S502T, was isolated from a deep-sea hydrothermal vent at Suiyo Seamount, Japan. Cells were Gram-positive, asporogenous, motile, and curved rods, measuring 1.6–5.6 µm in length. The strain was an obligate anaerobe that grew fermentatively on complex substrates such as yeast extract and Bacto peptone. Elemental sulfur stimulated the growth of the strain, and was reduced to hydrogen sulfide. The strain grew within a temperature range of 10–23 °C (optimum at 20 °C), pH range of 4.8–8.3 (optimum at 7.4), and a NaCl concentration range of 1.0–4.0% (w/v) (optimum at 3.0%, w/v). Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolate was a member of the class Clostridia, with Fusibacter paucivorans strain SEBR 4211T (91.1% sequence identity) being its closest relative. The total size of the genome of the strain was 3.12 Mbp, and a G + C content was 28.2 mol%. The highest values for average nucleotide identity (ANI), average amino acid identity (AAI), and digital DNA-DNA hybridization (dDDH) value of strain S502T with relatives were 67.5% (with Marinisporobacter balticus strain 59.4MT), 51.5% (with M. balticus strain 59.4MT), and 40.9% (with Alkaliphilus serpentinus strain LacTT), respectively. Based on a combination of phylogenetic, genomic, and phenotypic characteristics, we propose strain S502T to represent a novel genus and species, Helicovermis profundi gen. nov., sp. nov., with the type strain S502T (= DSM 112048T = JCM 39167T). [ABSTRACT FROM AUTHOR]

A novel hyperthermophilic, heterotrophic archaeon, strain YC29T, was isolated from a deep-sea hydrothermal vent in the Mid-Okinawa Trough, Japan. Cells of strain YC29T were non-motile, irregular cocci with diameters of 1.2–3.0 µm. The strain was an obligatory fermentative anaerobe capable of growth on complex proteinaceous substrates. Growth was observed between 85 and 100 °C (optimum 90–95 °C), pH 4.9–6.4 (optimum 5.1), and in the presence of 1.4–4.0% (w/v) NaCl (optimum 3.0%). Inorganic carbon was required as a carbon source. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolate was a member of the family Pyrodictiaceae. The genome size was 2.02 Mbp with a G+C content of 49.4%. The maximum values for average nucleotide identity (ANI), average amino acid identity (AAI), and in silico DNA–DNA hybridization (dDDH) value of strain YC29T with relatives were 67.9% (with Pyrodictium abyssi strain AV2T), 61.1% (with Pyrodictium occultum strain PL-19T), and 33.8% (with Pyrolobus fumarii strain 1AT), respectively. Based on the phylogenetic, genomic, and phenotypic characteristics, we propose that strain YC29T represents a novel genus and species, Pyrofollis japonicus gen. nov., sp. (type strain YC29T = DSM 113394T = JCM 39171T). [ABSTRACT FROM AUTHOR]

Chemosynthetic ecosystems powered by microbial primary production are rare 'hot spots' of biological activity in the deep‐sea characterized by dense aggregations of specially adapted animal species. Among settings where such systems have been found, serpentinite‐hosted seep systems supported by alkaline geofluid are particularly understudied with just a few known sites worldwide. Mariana Forearc hosts the world's only series of active serpentinite mud volcanoes, but seep communities have only been reported from South Chamorro Seamount where large bathymodioline mussels dominate. Here, we report the discovery of a serpentinite‐hosted seep on the conical summit of Asùt Tesoru Seamount, Mariana Forearc. Named the 'Big Blue Seep', this field features white, likely carbonate crusts inhabited by animals, under which fluid seepage could be seen. We confirm 16 animal species, including typical seep‐associated fauna such as Desbruyeresia gastropods and Acharax awning‐clams. This is surprising as previous research expeditions did not notice any sign of chemosynthesis‐based ecosystems on this seamount, although the community is indeed difficult to spot due to the lack of large‐bodied epifauna such as mussels. The Big Blue Seep is adjacent to three drill holes made by the International Ocean Discovery Program expedition 366 (Holes U1496A‐C), which may have impact on seepage. Our findings represent the second chemosynthesis‐based ecosystem associated with serpentinite mud volcanism, suggestive of further such communities on other Mariana Forearc mud volcanoes. [ABSTRACT FROM AUTHOR]

The Capitanian stage is characterized by marine anoxia possibly related to the extinction, although the global redox structure of the Capitanian ocean has not been constrained. We newly report a nitrogen isotope (δ15N) record from a paleo‐atoll limestone at the top of a mid‐Panthalassan seamount to constrain the spatial extent and duration of the Capitanian marine anoxia. The δ15N value of limestone after acid treatment is substantially high for ∼5‐Myr up to +28‰, the highest through the Phanerozoic oceans, suggesting that the nitrogen source (nitrate) was substantially enriched in 15N via denitrification within subsurface oxygen‐deficient zones (ODZs; O2 < 5 µM). Numerical modeling of nitrogen isotope dynamics in the upwelling system along the seamount suggests that the possible minimum δ15N value of a global deep‐oceanic nitrate reservoir was ca. +9‰ in the Capitanian (∼4‰ higher than at the present). Furthermore, a redox‐dependent nitrogen isotope mass balance model constrained the global redox structure of the Capitanian superocean. Substantially reducing conditions (O2 ≤ 20 µM) prevailed at intermediate water depths (100–1,000 m), in association with expanded ODZs with anoxic/euxinic cores along continental margins (≥ ∼0.4% of global ocean volume), while the deep‐ocean remained to be more oxidizing (O2 ≤ 60 µM). The enhanced open‐ocean productivity associated with the low sea‐level and high nutrient flux to the ocean resulted in the global ocean deoxygenation during the cooling stage. Our model is consistent with previous geologic observations and with a possible link between the long‐term (∼5‐Myr) development of marine dysoxia and the extinction. Plain Language Summary: The Capitanian stage is a peculiar stage characterized by several environmental changes including marine anoxia, possibly related to the large extinction. Previous studies reported the evidence for marine anoxia developed at least locally in the Capitanian, although the spatial extent and duration of anoxia in the superocean Panthalassa in the stage have been poorly constrained. Bioavailable nitrogen is essential for life and the nitrogen isotopic composition of sedimentary record is useful to reconstruct the global nitrogen cycle in association with oceanic redox condition in the past. We report a ∼5‐Myr‐long nitrogen isotope record from a shallow‐water limestone in the lost mid‐superocean during the Capitanian. This unique record reveals major changes in global nitrogen cycle in the stage, that is, the appearance of a substantially 15N‐enriched oceanic nitrate reservoir indicating enhanced anaerobic respiration under reducing conditions. Numerical modeling further constrains that the reducing water masses (O2 < 20 μM) prevailed at intermediate water depths (100–1,000 m) in the superocean, in association with the expanded oxygen‐deficient zones with anoxic/euxinic cores developed along the continental margins (at least twice as much as in the modern oceans). Our new model is consistent with the scenario that the long‐term subsurface anoxia/euxinia contributed to the shelf extinction. Key Points: N isotope record from the mid‐Panthalassa suggesting expanded oxygen‐deficient zones in mid‐water depths (>∼0.4% of global ocean volume)Substantially reducing ocean in association with the low sea‐level, high nutrient flux to the ocean, and enhanced open‐ocean productivityA possible link between the long‐term (∼5‐Myr) deep‐water anoxia/euxinia along the continental margins and the shelf extinction [ABSTRACT FROM AUTHOR]

A novel bacterium, strain MOT50T, was isolated from the chimney structure at the Iheya North field in the Mid-Okinawa Trough. The cells were motile short rods with a single polar flagellum. Growth was observed between 40 and 65 ℃ (optimum, 52 ℃), at pH values between 5.0 and 7.1 (optimum, pH 6.1) and in the presence of 2.0–4.0% NaCl (optimum, 2.5%). The isolates utilized molecular hydrogen, thiosulfate, or elemental sulfur as the sole electron donor. Thiosulfate, elemental sulfur, nitrate, and molecular oxygen are utilized as the sole electron acceptor. Ammonium is required as a nitrogen source. Thiosulfate, elemental sulfur, sulfate, or sulfite serves as a sulfur source for growth. The G + C content of the genomic DNA was 28.9%. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that strain MOT50T belonged to the genus Nitrosophilus of the class “Campylobacteria”, and its closest relative was Nitrosophilus labii HRV44T (97.20%). On the basis of the phylogenetic, physiological, and molecular characteristics, it is proposed that the organism represents a novel species within the genus Nitrosophilus, Nitrosophilus kaiyonis sp. nov. The type strain is MOT50T (= JCM 39187T = KCTC 25251T). [ABSTRACT FROM AUTHOR]

Electroautotrophic microorganisms have attracted great attention since they exhibit a new type of primary production. Here, in situ electrochemical cultivation was conducted using the naturally occurring electromotive forces at a deep-sea hydrothermal vent. The voltage and current generation originating from the resulting microbial activity was observed for 12 days of deployment, with fluctuation in response to tidal cycles. A novel bacterium belonging to the genus Thiomicrorhabdus dominated the microbial community specifically enriched on the cathode. Metagenomic analysis provided the draft genome of the bacterium and the gene repertoire indicated that the bacterium has the potential for thio-autotrophic growth, which is a typical physiological feature of the members of the genus, while the bacterium had a unique gene cluster encoding multi-heme cytochrome c proteins responsible for extracellular electron transfer. Herein, we propose this bacterium as a new species, specifically enriched during electricity generation, as 'Candidatus Thiomicrorhabdus electrophagus'. This finding suggests the natural occurrence of electrosynthetic microbial populations using the geoelectricity in deep-sea hydrothermal environments. [ABSTRACT FROM AUTHOR]

Lakes of molten sulfur are features sometimes found in seafloor hydrothermal vent systems. Daikoku of the northern Mariana Arc is notable for being home to one of such features inside its summit caldera, the "Sulfur Cauldron" discovered in 2006. A number of oceanographic research cruises since then have revealed significant volcanic activities on Daikoku Seamount, including an eruption event in 2014 leading to the formation of a new basin‐like crater. How this event impacted the sulfur lake on Daikoku Seamount remained unclear. Here, we revisited Daikoku Seamount with a remotely operated vehicle to show that the new crater is currently home to a much larger molten sulfur lake than the Sulfur Cauldron, which we name the "Rengoku" sulfur lake. Our samples provided new insights on the structure of submarine sulfur lakes, and contribute to the time‐series observation of volcanic and hydrothermal activities on Daikoku Seamount. [ABSTRACT FROM AUTHOR]

Prebiotic chemical evolution and the emergence of life in the seafloor hydrothermal systems of Hadean Earth is among the most plausible and popular hypotheses for the origin of earthly life. In contrast, many studies pointed out that this hypothesis intrinsically harbors a critical unsolved problem called the "water paradox": Abundant water limits dehydration synthesis and instead facilitates hydrolysis of organic molecules during the early stage of chemical evolution. However, many of these criticisms have not referred to the abundant liquid/supercritical CO2 (L/SC-CO2) fluids and pools in modern hydrothermal systems, which not only create dry environments but also behave as hydrophobic solvents at and beneath the seafloor. In this paper, we theorize the generation and preservation of a L/SC-CO2 pool in modern seafloor hydrothermal systems and reinterpret the fossil hydrothermal systems preserved in early Archean seafloor basalts. The theoretical estimation of subseafloor phase separation and phase segregation of CO2-rich hydrothermal fluids suggests the presence of L/SC-CO2 fluids and pools in Hadean seafloor hydrothermal systems. Because they behave as hydrophobic organic solvents, L/SC-CO2 can potentially initiate the dehydration synthesis of organic molecules in seafloor hydrothermal systems. Moreover, at the interface between L/SC-CO2 and H2O-rich fluid (seawater or hydrothermal fluid), amphiphilic molecules might be generated and triggered into self-assembled growth. Based on the abundant occurrence and physicochemical properties of L/SC-CO2 fluids, we propose a new stepwise concept for the origin of life, whereby prebiotic chemical evolution was co-hosted and facilitated by L/SC-CO2 in Hadean water-rich seafloor hydrothermal systems. This "liquid/supercritical CO2 hypothesis" potentially overcomes the water paradox and strengthens the idea that earthly life was hatched in deep-sea hydrothermal systems. [ABSTRACT FROM AUTHOR]

The scaly-foot snail (Chrysomallon squamiferum) inhabiting deep-sea hydrothermal vents in the Indian Ocean relies on its sulphur-oxidising gammaproteobacterial endosymbionts for nutrition and energy. In this study, we investigate the specificity, transmission mode, and stability of multiple scaly-foot snail populations dwelling in five vent fields with considerably disparate geological, physical and chemical environmental conditions. Results of population genomics analyses reveal an incongruent phylogeny between the endosymbiont and mitochondrial genomes of the scaly-foot snails in the five vent fields sampled, indicating that the hosts obtain endosymbionts via horizontal transmission in each generation. However, the genetic homogeneity of many symbiont populations implies that vertical transmission cannot be ruled out either. Fluorescence in situ hybridisation of ovarian tissue yields symbiont signals around the oocytes, suggesting that vertical transmission co-occurs with horizontal transmission. Results of in situ environmental measurements and gene expression analyses from in situ fixed samples show that the snail host buffers the differences in environmental conditions to provide the endosymbionts with a stable intracellular micro-environment, where the symbionts serve key metabolic functions and benefit from the host's cushion. The mixed transmission mode, symbiont specificity at the species level, and stable intracellular environment provided by the host support the evolutionary, ecological, and physiological success of scaly-foot snail holobionts in different vents with unique environmental parameters. [ABSTRACT FROM AUTHOR]

The hadal amphipod Hirondellea gigas is an emblematic animal of the Pacific trenches, and has a number of special adaptations to thrive in this 'extreme' environment, which includes the deepest part of the Earth's ocean. One such adaptation that has been suggested is the presence of an 'aluminum gel shield' on the surface of its body in order to prevent the dissolution of calcitic exoskeleton below the carbonate compensation depth. However, this has not been investigated under experimental conditions that sufficiently prevent aluminum artefacts, and the possibility of other elements with similar characteristic X-ray energy as aluminum (such as bromine) has not been considered. Here, we show with new electron microscopy data gathered under optimized conditions to minimize aluminum artefacts that H. gigas actually does not have an aluminum shield–instead many parts of its body are enriched in bromine, particularly gastric ossicles and setae. Results from elemental analyses pointed to the use of calcite partially substituted with magnesium by H. gigas in its exoskeleton, in order to suppress dissolution. Our results exemplify the necessity of careful sample preparation and analysis of the signals in energy-dispersive X-ray spectroscopic analysis, and the importance of analyses at different electron energies. [ABSTRACT FROM AUTHOR]

H2‐rich ultramafic‐hosted hydrothermal systems are considered to be important places for the origin and early evolution of life. In this study, we conducted two hydrothermal serpentinization/carbonation experiments involving synthetic komatiite under CO2‐rich conditions to further understand the chemical nature of hydrothermal fluids in the komatiite‐hosted seafloor hydrothermal systems in the early Earth. The H2 concentration in fluid at 300°C is one order of magnitude lower than that under CO2‐free conditions, which revealed that the carbonation of komatiites suppressed H2 generation under CO2‐rich conditions. The steady‐state H2 concentrations in the fluid increased with increasing temperature, while the Fe content of carbonate minerals in the run products increased with decreasing temperature. This correlation suggested that Fe incorporation into the carbonate minerals would limit the H2 generation during the serpentinization of komatiites at each temperature. In addition, the pH of the fluid also depended on temperature. High‐temperature (>300°C) fluids became alkaline, whereas low‐temperature fluids became acidic. Thermodynamic calculations show that the acidic fluids were attributed to high water/rock ratio during the hydrothermal reactions. Consequently, H2‐poor and acidic fluids were likely generated at low temperatures. In contrast, the H2‐rich and alkaline hydrothermal fluids were generated at temperatures above 300°C, which suggests that high‐temperature seafloor hydrothermal systems may be more favorable than lower‐temperature systems for the emergence and early evolution of life in the Hadean ocean in terms of the formation of energy and electrochemical potentials between hydrothermal fluids and ambient seawater. Key Points: Fe incorporation into the carbonate minerals limits the H2 generation during serpentinizationHigh‐temperature seafloor hydrothermal systems may be favorable for the emergence and early evolution of lifeThe H2 flux from serpentinization in the Archean would be much lower than that at present [ABSTRACT FROM AUTHOR]

To understand the mechanism underlying metastasis, identification of a mechanism-based and common biomarker for circulating tumour cells (CTCs) in heterogenous breast cancer is needed. SET, an endogenous inhibitor of protein phosphatase 2A, was overexpressed in all subtypes of invasive breast carcinoma tissues. Treatment with SET-targeted siRNAs reduced the motility of MCF-7 and MDA-MB-231 cells in transwell assay. SET knockdown reduced the number of mammospheres by 60–70% in MCF-7 and MDA-MB-231 cells, which was associated with the downregulation of OCT4 and SLUG. Hence, we analysed the presence of SET-expressing CTCs (SET-CTCs) in 24 breast cancer patients. CTCs were enriched using a size-based method and then immunocytochemically analysed using an anti-SET antibody. SET-CTCs were detected in 6/6 (100%) patients with recurrent breast cancer with a median value of 12 (12 cells/3 mL blood), and in 13/18 (72.2%) patients with stage I–III breast cancer with a median value of 2.5, while the median value of healthy controls was 0. Importantly, high numbers of SET-CTCs were correlated with lymph node metastasis in patients with stage I–III disease. Our results indicate that SET contributes to breast cancer progression and can act as a potential biomarker of CTCs for the detection of metastasis. [ABSTRACT FROM AUTHOR]

A prevailing scenario of the origin of life postulates thioesters as key intermediates in protometabolism, but there is no experimental support for the prebiotic CO2 fixation routes to thioesters. Here we demonstrate that, under a simulated geoelectrochemical condition in primordial ocean hydrothermal systems (–0.6 to –1.0 V versus the standard hydrogen electrode), nickel sulfide (NiS) gradually reduces to Ni0, while accumulating surface-bound carbon monoxide (CO) due to CO2 electroreduction. The resultant partially reduced NiS realizes thioester (S-methyl thioacetate) formation from CO and methanethiol even at room temperature and neutral pH with the yield up to 35% based on CO. This thioester formation is not inhibited, or even improved, by 50:50 coprecipitation of NiS with FeS or CoS (the maximum yields; 27 or 56%, respectively). Such a simple thioester synthesis likely occurred in Hadean deep-sea vent environments, setting a stage for the autotrophic origin of life. Thioesters are often suggested to be key intermediates in primordial metabolism, but prebiotic CO2 fixation routes to thioesters remain elusive. Here, the authors show nickel sulfide, partially reduced to Ni(0) with realistic geoelectric potentials, facilitates thioester (S-methyl thioacetate) formation via CO2-to-CO electroreduction, followed by a CO-methanethiol reaction. [ABSTRACT FROM AUTHOR]

Seafloor cratering is an important process that records the impact history of the Earth, affects projectile survivability, and determines the mass of ejecta from benthic rock that is transported to the atmosphere. We report experimental hypervelocity impacts of chondrite and other projectiles (olivine, stainless‐steel, polycarbonate) on a water‐covered iron target to derive a scaling relationship for benthic cratering. In situ observations of 5‐km/s impacts quantify the deceleration of projectiles in the water column by shock‐induced deformation and fragmentation. The minimum water depths at which multiple craters appeared on the benthic target were two and four times the projectile diameter for chondrite and stainless steel, respectively. Based on the observed deceleration of projectiles in water, the cratering efficiency of a benthic target for a given impact velocity is predicted to follow an exponential decay law in terms of water depth normalized by projectile diameter (H/d), given by πv ∝ exp(−(H/d)/κ), when a projectile of original mass collides with the target. Comparing the volume of the largest crater in the experiments and that derived from the scaling relation, mass ratios of the largest projectile fragment to original projectile in the 5‐km/s impact were calculated to be 0.1–0.3 (H/d = 2–6) and 1.0 ± 0.3 (H/d = 5.5) for chondrite and stainless steel, respectively. Using the scaling relationship, the volume of the transient crater on oceanic crust by an asteroid impact is estimated to be smaller than previously predicted by hydrocode simulation when the asteroid fragmentation in the water column controls seafloor cratering. Plain Language Summary: The hypervelocity (measured in km/s) impact of extraterrestrial bodies in the marine environment is more common than that on land because ∼70% of the Earth's surface is covered by oceans. Seafloor cratering is important for recording Earth's impact history, driving environmental, biotic, and climatic perturbations by ejecting crustal materials into the atmosphere (e.g., the K‐T boundary event); impactors can also affect the fate of extraterrestrial organic matter and may have been key components of primitive life on early Earth (the so‐called panspermia hypothesis). Herein, we simulated the oceanic hypervelocity impacts of asteroids in a laboratory to derive a scaling relationship for benthic cratering. Our results suggest that deformation and fragmentation of projectiles occurs during the impact penetration of water at an initial impact velocity of 5 km/s, thereby controlling the water depth conditions that enable benthic cratering. The experimentally derived scaling relationship of benthic cratering permits the estimation of transient crater volume of oceanic crust in a given water depth by a chondrite impact. Key Points: Oceanic hypervelocity impacts of asteroids were simulated in a laboratory settingDeformation and fragmentation of projectiles within the water column controlled benthic crateringBased on the experimental data, a scaling relation for benthic cratering is provided [ABSTRACT FROM AUTHOR]

Some deep-sea chemosynthetic invertebrates and their symbiotic bacteria can use molecular hydrogen (H2) as their energy source. However, how much the chemosynthetic holobiont (endosymbiont-host association) physiologically depends on H2 oxidation has not yet been determined. Here, we demonstrate that the Campylobacterota endosymbionts of the gastropod Alviniconcha marisindica in the Kairei and Edmond fields (kAlv and eAlv populations, respectively) of the Indian Ocean, utilize H2 in response to their physical and environmental H2 conditions, although the 16S rRNA gene sequence of both the endosymbionts shared 99.6% identity. A thermodynamic calculation using in situ H2 and hydrogen sulfide (H2S) concentrations indicated that chemosynthetic symbiosis could be supported by metabolic energy via H2 oxidation, particularly for the kAlv holobiont. Metabolic activity measurements showed that both the living individuals and the gill tissues consumed H2 and H2S at similar levels. Moreover, a combination of fluorescence in situ hybridization, quantitative transcript analyses, and enzymatic activity measurements showed that the kAlv endosymbiont expressed the genes and enzymes for both H2- and sulfur-oxidations. These results suggest that both H2 and H2S could serve as the primary energy sources for the kAlv holobiont. The eAlv holobiont had the ability to utilize H2, but the gene expression and enzyme activity for hydrogenases were much lower than for sulfur-oxidation enzymes. These results suggest that the energy acquisitions of A. marisindica holobionts are dependent on H2- and sulfur-oxidation in the H2-enriched Kairei field and that the mechanism of dual metabolism is controlled by the in situ H2 concentration. [ABSTRACT FROM AUTHOR]

The Scaly-foot Snail, Chrysomallon squamiferum, presents a combination of biomineralised features, reminiscent of enigmatic early fossil taxa with complex shells and sclerites such as sachtids, but in a recently-diverged living species which even has iron-infused hard parts. Thus the Scaly-foot Snail is an ideal model to study the genomic mechanisms underlying the evolutionary diversification of biomineralised armour. Here, we present a high-quality whole-genome assembly and tissue-specific transcriptomic data, and show that scale and shell formation in the Scaly-foot Snail employ independent subsets of 25 highly-expressed transcription factors. Comparisons with other lophotrochozoan genomes imply that this biomineralisation toolkit is ancient, though expression patterns differ across major lineages. We suggest that the ability of lophotrochozoan lineages to generate a wide range of hard parts, exemplified by the remarkable morphological disparity in Mollusca, draws on a capacity for dynamic modification of the expression and positioning of toolkit elements across the genome. The Scaly-foot Snail, Chrysomallon squamiferum, is a model for understanding the evolution of biomineralised armour. Here, the authors present a chromosome-level reference genome assembly and tissue-specific transcriptomic data for this enigmatic organism. [ABSTRACT FROM AUTHOR]

Hadal trench bottom (>6000 m below sea level) sediments harbor higher microbial cell abundance compared with adjacent abyssal plain sediments. This is supported by the accumulation of sedimentary organic matter (OM), facilitated by trench topography. However, the distribution of benthic microbes in different trench systems has not been well explored yet. Here, we carried out small subunit ribosomal RNA gene tag sequencing for 92 sediment subsamples of seven abyssal and seven hadal sediment cores collected from three trench regions in the northwest Pacific Ocean: the Japan, Izu-Ogasawara, and Mariana Trenches. Tag-sequencing analyses showed specific distribution patterns of several phyla associated with oxygen and nitrate. The community structure was distinct between abyssal and hadal sediments, following geographic locations and factors represented by sediment depth. Co-occurrence network revealed six potential prokaryotic consortia that covaried across regions. Our results further support that the OM cycle is driven by hadal currents and/or rapid burial shapes microbial community structures at trench bottom sites, in addition to vertical deposition from the surface ocean. Our trans-trench analysis highlights intra- and inter-trench distributions of microbial assemblages and geochemistry in surface seafloor sediments, providing novel insights into ultradeep-sea microbial ecology, one of the last frontiers on our planet. [ABSTRACT FROM AUTHOR]

Serpentinitic systems are potential habitats for microbial life due to frequently high concentrations of microbial energy substrates, such as hydrogen (H2), methane (CH4), and short-chain organic acids (SCOAs). Yet, many serpentinitic systems are also physiologically challenging environments due to highly alkaline conditions (pH > 10) and elevated temperatures (>80°C). To elucidate the possibility of microbial life in deep serpentinitic crustal environments, International Ocean Discovery Program (IODP) Expedition 366 drilled into the Yinazao, Fantangisña, and Asùt Tesoru serpentinite mud volcanoes on the Mariana Forearc. These mud volcanoes differ in temperature (80, 150, 250°C, respectively) of the underlying subducting slab, and in the porewater pH (11.0, 11.2, 12.5, respectively) of the serpentinite mud. Increases in formate and acetate concentrations across the three mud volcanoes, which are positively correlated with temperature in the subducting slab and coincide with strong increases in H2 concentrations, indicate a serpentinization-related origin. Thermodynamic calculations suggest that formate is produced by equilibrium reactions with dissolved inorganic carbon (DIC) + H2, and that equilibration continues during fluid ascent at temperatures below 80°C. By contrast, the mechanism(s) of acetate production are not clear. Besides formate, acetate, and H2 data, we present concentrations of other SCOAs, methane, carbon monoxide, and sulfate, δ13C-data on bulk carbon pools, and microbial cell counts. Even though calculations indicate a wide range of microbial catabolic reactions to be thermodynamically favorable, concentration profiles of potential energy substrates, and very low cell numbers suggest that microbial life is scarce or absent. We discuss the potential roles of temperature, pH, pressure, and dispersal in limiting the occurrence of microbial life in deep serpentinitic environments. [ABSTRACT FROM AUTHOR]

Viruses are the most abundant biological entities on Earth and perform essential ecological functions in aquatic environments by mediating biogeochemical cycling and lateral gene transfer. Cellular life as well as viruses have been found in deep subseafloor sediment. However, the study of deep sediment viruses has been hampered by the complexities involved in efficiently extracting viruses from a sediment matrix. Here, we developed a new method for the extraction of viruses from sediment based on density separation using a Nycodenz density step gradient. The density separation method resulted in up to 2 orders of magnitude greater recovery of viruses from diverse subseafloor sediments compared to conventional methods. The density separation method also showed more consistent performance between samples of different sediment lithology, whereas conventional virus extraction methods were highly inconsistent. Using this new method, we show that previously published virus counts have underestimated viral abundances by up to 2 orders of magnitude. These improvements suggest that the carbon contained within viral biomass in the subseafloor environment may potentially be revised upward to 0.8–3.7 Gt from current estimates of 0.2 Gt. The vastly improved recovery of viruses indicate that viruses represent a far larger pool of organic carbon in subseafloor environments than previously estimated. [ABSTRACT FROM AUTHOR]

Studying the diversity of extant metabolisms and enzymes, especially those involved in the biosynthesis of primary metabolites including amino acids, is important to shed light on the evolution of life. Many organisms synthesize serine from phosphoserine via a reaction catalyzed by phosphoserine phosphatase (PSP). Two types of PSP, belonging to distinct protein superfamilies, have been reported. Genomic analyses have revealed that the thermophilic bacterium Thermus thermophilus lacks both homologs while still having the ability to synthesize serine. Here, we purified a protein from T. thermophilus which we biochemically identified as a PSP. A knockout mutant of the responsible gene (TT_C1695) was constructed, which showed serine auxotrophy. These results indicated the involvement of this gene in serine biosynthesis in T. thermophilus. TT_C1695 was originally annotated as a protein with unknown function belonging to the haloacid dehalogenase‐like hydrolase (HAD) superfamily. The HAD superfamily, which comprises phosphatases against a variety of substrates, includes also the classical PSP as a member. However, the amino acid sequence of the TT_C1695 was more similar to phosphatases acting on non‐phosphoserine substrates than classical PSP; therefore, a BLASTP search and phylogenetic analysis failed to predict TT_C1695 as a PSP. Our results strongly suggest that the T. thermophilus PSP and classical PSP evolved specificity for phosphoserine independently. Enzymes: Phosphoserine phosphatase (PSP; EC 3.1.3.3); serine hydroxymethyltransferase (EC 2.1.2.1); 3‐phosphoglycerate dehydrogenase (EC 1.1.1.95); 3‐phosphoserine aminotransferase (EC 2.6.1.52). The serine biosynthetic pathway for the thermophilic bacterium Thermus thermophilus was previously unknown and phosphoserine phosphatase (PSP), an enzyme necessary for the pathway, had not been identified. Here, we identified a novel PSP in T. thermophilus belonging to the same protein superfamily as classical PSPs. However, these two types of PSP are likely to have independently evolved specificity for phosphoserine. [ABSTRACT FROM AUTHOR]

Summary: Various lineages of ammonia‐oxidizing archaea (AOA) are present in deep waters, but the mechanisms that determine ecotype formation are obscure. We studied 18 high‐quality genomes of the marine group I AOA lineages (alpha, gamma and delta) from the Mariana and Ogasawara trenches. The genomes of alpha AOA resembled each other, while those of gamma and delta lineages were more divergent and had even undergone insertion of some phage genes. The instability of the gamma and delta AOA genomes could be partially due to the loss of DNA polymerase B (polB) and methyladenine DNA glycosylase (tag) genes responsible for the repair of point mutations. The alpha AOA genomes harbour genes encoding a thrombospondin‐like outer membrane structure that probably serves as a barrier to gene flow. Moreover, the gamma and alpha AOA lineages rely on vitamin B12‐independent MetE and B12‐dependent MetH, respectively, for methionine synthesis. The delta AOA genome contains genes involved in uptake of sugar and peptide perhaps for heterotrophic lifestyle. Our study provides insights into co‐occurrence of cladogenesis and anagenesis in the formation of AOA ecotypes that perform differently in nitrogen and carbon cycling in dark oceans. [ABSTRACT FROM AUTHOR]

The study of extracellular DNA viral particles in the ocean is currently one of the most advanced fields of research in viral metagenomic analysis. However, even though the intracellular viruses of marine microorganisms might be the major source of extracellular virus particles in the ocean, the diversity of these intracellular viruses is not well understood. Here, our newly developed method, referred to herein as fragmented and primer ligated dsRNA sequencing (flds) version 2, identified considerable genetic diversity of marine RNA viruses in cell fractions obtained from surface seawater. The RNA virus community appears to cover genome sequences related to more than half of the established positive‐sense ssRNA and dsRNA virus families, in addition to a number of unidentified viral lineages, and such diversity had not been previously observed in floating viral particles. In this study, more dsRNA viral contigs were detected in host cells than in extracellular viral particles. This illustrates the magnitude of the previously unknown marine RNA virus population in cell fractions, which has only been partially assessed by cellular metatranscriptomics and not by contemporary viral metagenomic studies. These results reveal the importance of studying cell fractions to illuminate the full spectrum of viral diversity on Earth. [ABSTRACT FROM AUTHOR]

Abstract: Deep‐sea hydrothermal vents are hot springs on the seafloor. In recent years, electricity generation in deep‐sea hydrothermal vents has been reported. Electricity can be generated through the sulfide minerals that form in seafloor hydrothermal deposits, and these minerals can convert the redox and heat energy between hydrothermal fluids and seawater into electric power. The physical and chemical phenomena of generating electricity from natural minerals provide key insights into development of deep‐sea power plants and novel electricity‐conversion materials with earth abundant elements. In addition, the new findings have established a novel concept of life, e. g., existence of electricity‐sustained life in hydrothermal vents and widespread occurrence of electron‐uptake ecosystems on the seafloor, together with a new hypothesis about the origin of life. [ABSTRACT FROM AUTHOR]

Previous studies on marine environmental virology have primarily focused on doublestranded DNA (dsDNA) viruses; however, it has recently been suggested that single-stranded DNA (ssDNA) viruses are more abundant in marine ecosystems. In this study, we performed a quantitative viral community DNA analysis to estimate the relative abundance and composition of both ssDNA and dsDNA viruses in offshore upper bathyal sediment from Tohoku, Japan (water depth = 500 m). The estimated dsDNA viral abundance ranged from 3 × 106 to 5 × 106 genome copies per cm3 sediment, showing values similar to the range of fluorescence-based direct virus counts. In contrast, the estimated ssDNA viral abundance ranged from 1 × 108 to 3 × 109 genome copies per cm3 sediment, thus providing an estimation that the ssDNA viral populations represent 96.3–99.8% of the benthic total DNA viral assemblages. In the ssDNA viral metagenome, most of the identified viral sequences were associated with ssDNA viral families such as Circoviridae and Microviridae. The principle components analysis of the ssDNA viral sequence components from the sedimentary ssDNA viral metagenomic libraries found that the different depth viral communities at the study site all exhibited similar profiles compared with deep-sea sediment ones at other reference sites. Our results suggested that deep-sea benthic ssDNA viruses have been significantly underestimated by conventional direct virus counts and that their contributions to deep-sea benthic microbial mortality and geochemical cycles should be further addressed by such a new quantitative approach. [ABSTRACT FROM AUTHOR]

It was previously revealed that the total CO concentration in seawater decreased during the Late Archean. In this paper, to assess the secular change of total CO concentration in seawater, we focused on the Paleoproterozoic era when the Earth experienced its first recorded global glaciation. The 2.4 Ga Ongeluk Formation outcrops in the Kaapvaal Craton, South Africa. The formation consists mainly of submarine volcanic rocks that have erupted during the global glaciation. The undeformed lavas are mostly carbonate-free but contain rare disseminated calcites. The carbon isotope ratio of the disseminated calcite (δC vs. VPDB) ranges from − 31.9 to − 13.2 ‰. The relatively low δC values clearly indicate that the carbonation was partially contributed by C-depleted CO derived from decomposition of organic matter beneath the seafloor. The absence of δC higher than − 13.2‰ is consistent with the exceptionally C-depleted CO in the Ongeluk seawater during glaciation. The results suggest that carbonation occurred during subseafloor hydrothermal circulation just after the eruption of the lavas. Previously, it was reported that the carbonate content in the uppermost subseafloor crust decreased from 3.2 to 2.6 Ga, indicating a decrease in total CO concentration in seawater during that time. However, the average CO (as carbonate) content in the Ongeluk lavas (< 0.001 wt%) is much lower than those of 2.6 Ga representatives and even of modern equivalents. This finding suggests that the total CO concentration in seawater further decreased during the period between 2.6 and 2.4 Ga. Thus, the very low content of carbonate in the Ongeluk lavas is probable evidence for the extremely low CO concentration in seawater during the global glaciation. Considering that the carbonate content of the subseafloor crusts also shows a good correlation with independently estimated atmospheric pCO levels through the Earth history, it seem highly likely that the low carbonate content in the Ongeluk lavas reflects the low atmospheric pCO at that time. We conclude that the continuous decrease in CO concentration of seawater/atm. from 3.2 Ga was one of the contributing factors to the Paleoproterozoic global glaciation. [ABSTRACT FROM AUTHOR]

Deep-sea hydrothermal vents discharge abundant reductive energy into oxidative seawater. Herein, we demonstrated that in situ measurements of redox potentials on the surfaces of active hydrothermal mineral deposits were more negative than the surrounding seawater potential, driving electrical current generation. We also demonstrated that negative potentials in the surface of minerals were widespread in the hydrothermal fields, regardless of the proximity to hydrothermal fluid discharges. Lab experiments verified that the negative potential of the mineral surface was induced by a distant electron transfer from the hydrothermal fluid through the metallic and catalytic properties of minerals. These results indicate that electric current is spontaneously and widely generated in natural mineral deposits in deep-sea hydrothermal fields. Our discovery provides important insights into the microbial communities that are supported by extracellular electron transfer and the prebiotic chemical and metabolic evolution of the ocean hydrothermal systems. [ABSTRACT FROM AUTHOR]

Deep-sea hydrothermal vents discharge abundant reductive energy into oxidative seawater. Herein, we demonstrated that in situ measurements of redox potentials on the surfaces of active hydrothermal mineral deposits were more negative than the surrounding seawater potential, driving electrical current generation. We also demonstrated that negative potentials in the surface of minerals were widespread in the hydrothermal fields, regardless of the proximity to hydrothermal fluid discharges. Lab experiments verified that the negative potential of the mineral surface was induced by a distant electron transfer from the hydrothermal fluid through the metallic and catalytic properties of minerals. These results indicate that electric current is spontaneously and widely generated in natural mineral deposits in deep-sea hydrothermal fields. Our discovery provides important insights into the microbial communities that are supported by extracellular electron transfer and the prebiotic chemical and metabolic evolution of the ocean hydrothermal systems. [ABSTRACT FROM AUTHOR]

Rich animal and microbial communities have been found at deep-sea hydrothermal vents. Although the biogeography of vent macrofauna is well understood, the corresponding knowledge about vent microbial biogeography is lacking. Here, we apply the multilocus sequence analysis (MLSA) to assess the genetic variation of 109 Sulfurimonas strains with ⩾98% 16S rRNA gene sequence similarity, which were isolated from four different geographical regions (Okinawa Trough (OT), Mariana Volcanic Arc and Trough (MVAT), Central Indian Ridge (CIR) and Mid-Atlantic Ridge (MAR)). Sequence typing based on 11 protein-coding genes revealed high genetic variation, including some allele types that are widespread within regions, resulting in 102 nucleotide sequence types (STs). This genetic variation was predominantly due to mutation rather than recombination. Phylogenetic analysis of the 11 concatenated genes showed a clear geographical isolation corresponding to the hydrothermal regions they originated from, suggesting limited dispersal. Genetic differentiation among Sulfurimonas populations was primarily influenced by geographical distance rather than gas composition of vent fluid or habitat, although in situ environmental conditions of each microhabitat could not be examined. Nevertheless, Sulfurimonas may possess a higher dispersal capability compared with deep-sea hydrothermal vent thermophiles. This is the first report on MLSA of deep-sea hydrothermal vent Epsilonproteobacteria, which is indicative of allopatric speciation. [ABSTRACT FROM AUTHOR]

A novel iron-oxidizing chemolithoautotrophic bacterium, strain ET2, was isolated from a deep-sea sediment in a hydrothermal field of the Bayonnaise knoll of the Izu-Ogasawara arc. Cells were bean-shaped, curved short rods. Growth was observed at a temperature range of 15-30 °C (optimum 25 °C, doubling time 24 h) and a pH range of 5.8-7.0 (optimum pH 6.4) in the presence of NaCl at a range of 1.0-4.0 % (optimum 2.75 %). The isolate was a microaerophilic, strict chemolithoautotroph capable of growing using ferrous iron and molecular oxygen (O) as the sole electron donor and acceptor, respectively; carbon dioxide as the sole carbon source; and either ammonium or nitrate as the sole nitrogen source. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that the new isolate was related to the only previously isolated Mariprofundus species, M. ferrooxydans. Although relatively high 16S rRNA gene similarity (95 %) was found between the new isolate and M. ferrooxydans, the isolate was distinct in terms of cellular fatty acid composition, genomic DNA G+C content and cell morphology. Furthermore, genomic comparison between ET2 and M. ferrooxydans PV-1 indicated that the genomic dissimilarity of these strains met the standard for species-level differentiation. On the basis of its physiological and molecular characteristics, strain ET2 (= KCTC 15556 = JCM 30585 ) represents a novel species of Mariprofundus, for which the name Mariprofundus micogutta is proposed. We also propose the subordinate taxa Mariprofundales ord. nov. and Zetaproteobacteria classis nov. in the phylum Proteobacteria. [ABSTRACT FROM AUTHOR]

Intracellular thioautotrophic symbionts of deep-sea vesicomyid clams lack some DNA repair genes and are thought to be undergoing reductive genome evolution (RGE). In this study, we addressed two questions, 1) how these symbionts lost their DNA repair genes and 2) how such losses affect RGE. For the first question, we examined genes associated with nucleotide excision repair (NER; uvrA, uvrB, uvrC, uvrD, uvrD paralog [uvrDp] and mfd) in 12 symbionts of vesicomyid clams belonging to two clades (5 clade I and 7 clade II symbionts). While uvrA, uvrDp and mfd were conserved in all symbionts, uvrB and uvrC were degraded in all clade I symbionts but were apparently intact in clade II symbionts. UvrD was disrupted in two clade II symbionts. Among the intact genes in Ca. Vesicomyosocius okutanii (clade I), expressions of uvrD and mfd were detected by reverse transcription-polymerase chain reaction (RT-PCR), but those of uvrA and uvrDp were not. In contrast, all intact genes were expressed in the symbiont of Calyptogena pacifica (clade II). To assess how gene losses affect RGE (question 2), genetic distances of the examined genes in symbionts from Bathymodiolus septemdierum were shown to be larger in clade I than clade II symbionts. In addition, these genes had lower guanine+cytosine (GC) content and higher repeat sequence densities in clade I than measured in clade II. Our results suggest that NER genes are currently being lost from the extant lineages of vesicomyid clam symbionts. The loss of NER genes and mutY in these symbionts is likely to promote increases in genetic distance and repeat sequence density as well as reduced GC content in genomic genes, and may have facilitated reductive evolution of the genome. [ABSTRACT FROM AUTHOR]

Subseafloor microbes beneath active hydrothermal vents are thought to live near the upper temperature limit for life on Earth. We drilled and cored the Iheya North hydrothermal field in the Mid-Okinawa Trough, and examined the phylogenetic compositions and the products of metabolic functions of sub-vent microbial communities. We detected microbial cells, metabolic activities and molecular signatures only in the shallow sediments down to 15.8 m below the seafloor at a moderately distant drilling site from the active hydrothermal vents (450 m). At the drilling site, the profiles of methane and sulfate concentrations and the δ13C and δD isotopic compositions of methane suggested the laterally flowing hydrothermal fluids and the in situ microbial anaerobic methane oxidation. In situ measurements during the drilling constrain the current bottom temperature of the microbially habitable zone to ~45 °C. However, in the past, higher temperatures of 106-198 °C were possible at the depth, as estimated from geochemical thermometry on hydrothermally altered clay minerals. The 16S rRNA gene phylotypes found in the deepest habitable zone are related to those of thermophiles, although sequences typical of known hyperthermophilic microbes were absent from the entire core. Overall our results shed new light on the distribution and composition of the boundary microbial community close to the high-temperature limit for habitability in the subseafloor environment of a hydrothermal field. [ABSTRACT FROM AUTHOR]

To understand the chemical nature of hydrothermal fluids in the komatiite-hosted seafloor hydrothermal system in the Hadean, we conducted two hydrothermal serpentinization experiments involving synthetic komatiite and a CO-rich acidic NaCl fluid at 250 and 350 °C, 500 bars. During the experiments, the komatiites were strongly carbonated to yield iron-rich dolomite (3-9 wt.% FeO) at 250 °C and calcite (<0.8 wt.% FeO) at 350 °C, respectively. The carbonation of komatiites suppressed H generation in the fluids. The steady-state H concentrations in the fluid were approximately 0.024 and 2.9 mmol/kg at 250 and 350 °C, respectively. This correlation between the Fe content in carbonate mineral and the H concentration in the fluid suggests that the incorporation of ferrous iron into the carbonate mineral probably limited magnetite formation and consequent generation of hydrogen during the serpentinization of komatiites. The H concentration of the fluid at 350 °C corresponds to that of modern H-rich seafloor hydrothermal systems, such as the Kairei hydrothermal field, where hydrogenotrophic methanogens dominate in the prosperous microbial ecosystem. Accordingly, the high-temperature serpentinization of komatiite would provide the H-rich hydrothermal environments that were necessary for the emergence and early evolution of life in the Hadean ocean. In contrast, H-rich fluids may not have been generated by serpentinization at temperatures below 250 °C because carbonate minerals become more stable with decreasing temperature in the komatiite-HO-CO system. [ABSTRACT FROM AUTHOR]

Subseafloor pelagic sediments with high concentrations of organic matter form habitats for diverse microorganisms. Here, we determined depth profiles of genes for SSU rRNA, mcrA, dsrA and amoA from just beneath the seafloor to 363.3 m below the seafloor (mbsf) using core samples obtained from the forearc basin off the Shimokita Peninsula. The molecular profiles were combined with data on lithostratigraphy, depositional age, sedimentation rate and pore-water chemistry. The SSU rRNA gene tag structure and diversity changed at around the sulfate-methane transition zone ( SMTZ), whereas the profiles varied further with depth below the SMTZ, probably in connection with the variation in pore-water chemistry. The depth profiles of diversity and abundance of dsrA, a key gene for sulfate reduction, suggested the possible niche separations of sulfate-reducing populations, even below the SMTZ. The diversity and abundance patterns of mcrA, a key gene for methanogenesis/anaerobic methanotrophy, suggested a stratified distribution and separation of anaerobic methanotrophy and hydrogenotrophic or methylotrophic methanogensis below the SMTZ. This study provides novel insights into the relationships between the composition and function of microbial communities and the chemical environment in the nutrient-rich continental margin subseafloor sediments, which may result in niche separation and variability in subseafloor microbial populations. [ABSTRACT FROM AUTHOR]

Hydrogen and carbon isotope systematics of HO-H-CO-CH in hydrogenotrophic methanogenesis and their relation to H availability were investigated. Two H-syntrophic cocultures of fermentatively hydrogenogenic bacteria and hydrogenotrophic methanogens under conditions of <10 Pa-H and two pure cultures of hydrogenotrophic methanogens under conditions of ~10 Pa-H were tested. Carbon isotope fractionation between CH and CO during hydrogenotrophic methanogenesis was correlated with pH, as indicated in previous studies. The hydrogen isotope ratio of CH produced during rapid growth of the thermophilic methanogen Methanothermococcus okinawensis under high pH conditions (~10 Pa) was affected by the isotopic composition of H, as concluded in a previous study of Methanothermobacter thermautotrophicus. This ' $$ {\updelta \mathrm{D}}_{{\mathrm{H}}_2} $$ effect' is a possible cause of the diversity of previously reported values for hydrogen isotope fractionation between CH and HO examined in H-enriched culture experiments. Hydrogen isotope fractionation between CH and HO, defined by (1000 + $$ {\updelta \mathrm{D}}_{{\mathrm{CH}}_4} $$)/(1000 + $$ {\updelta \mathrm{D}}_{{\mathrm{H}}_2\mathrm{O}} $$), during hydrogenotrophic methanogenesis of the H-syntrophic cocultures was in the range 0.67-0.69. The hydrogen isotope fractionation of our H-syntrophic dataset overlaps with those obtained not only from low- pH experiments reported so far but also from natural samples of 'young' methane reservoirs (0.66-0.74). Conversely, such hydrogen isotope fractionation is not consistent with that of 'aged' methane in geological samples (≥0.79), which has been regarded as methane produced via hydrogenotrophic methanogenesis from the carbon isotope fractionation. As a possible process inducing the inconsistency in hydrogen isotope signatures between experiments and geological samples, we hypothesize that the hydrogen isotope signature of CH imprinted at the time of methanogenesis, as in the experiments and natural young methane, may be altered by diagenetic hydrogen isotope exchange between extracellular CH and HO through reversible reactions of the microbial methanogenic pathway in methanogenic region and/or geological methane reservoirs. [ABSTRACT FROM AUTHOR]

Current high-performance thermoelectric materials require elaborate doping and synthesis procedures, particularly in regard to the artificial structure, and the underlying thermoelectric mechanisms are still poorly understood. Here, we report that a natural chalcopyrite mineral, Cu1+xFe1−xS2, obtained from a deep-sea hydrothermal vent can directly generate thermoelectricity. The resistivity displayed an excellent semiconducting character, and a large thermoelectric power and high power factor were found in the low x region. Notably, electron-magnon scattering and a large effective mass was detected in this region, thus suggesting that the strong coupling of doped carriers and antiferromagnetic spins resulted in the natural enhancement of thermoelectric properties during mineralization reactions. The present findings demonstrate the feasibility of thermoelectric energy generation and electron/hole carrier modulation with natural materials that are abundant in the Earth's crust. [ABSTRACT FROM AUTHOR]

Current high-performance thermoelectric materials require elaborate doping and synthesis procedures, particularly in regard to the artificial structure, and the underlying thermoelectric mechanisms are still poorly understood. Here, we report that a natural chalcopyrite mineral, Cu1+xFe1−xS2, obtained from a deep-sea hydrothermal vent can directly generate thermoelectricity. The resistivity displayed an excellent semiconducting character, and a large thermoelectric power and high power factor were found in the low x region. Notably, electron-magnon scattering and a large effective mass was detected in this region, thus suggesting that the strong coupling of doped carriers and antiferromagnetic spins resulted in the natural enhancement of thermoelectric properties during mineralization reactions. The present findings demonstrate the feasibility of thermoelectric energy generation and electron/hole carrier modulation with natural materials that are abundant in the Earth's crust. [ABSTRACT FROM AUTHOR]

Despite major advances in understanding the molecular and genetic basis of cancer, metastasis remains the cause of >90% of cancer-related mortality. Understanding metastasis initiation and progression is critical to developing new therapeutic strategies to treat and prevent metastatic disease. Prevailing theories hypothesize that metastases are seeded by rare tumour cells with unique properties, which may function like stem cells in their ability to initiate and propagate metastatic tumours. However, the identity of metastasis-initiating cells in human breast cancer remains elusive, and whether metastases are hierarchically organized is unknown. Here we show at the single-cell level that early stage metastatic cells possess a distinct stem-like gene expression signature. To identify and isolate metastatic cells from patient-derived xenograft models of human breast cancer, we developed a highly sensitive fluorescence-activated cell sorting (FACS)-based assay, which allowed us to enumerate metastatic cells in mouse peripheral tissues. We compared gene signatures in metastatic cells from tissues with low versus high metastatic burden. Metastatic cells from low-burden tissues were distinct owing to their increased expression of stem cell, epithelial-to-mesenchymal transition, pro-survival, and dormancy-associated genes. By contrast, metastatic cells from high-burden tissues were similar to primary tumour cells, which were more heterogeneous and expressed higher levels of luminal differentiation genes. Transplantation of stem-like metastatic cells from low-burden tissues showed that they have considerable tumour-initiating capacity, and can differentiate to produce luminal-like cancer cells. Progression to high metastatic burden was associated with increased proliferation and MYC expression, which could be attenuated by treatment with cyclin-dependent kinase (CDK) inhibitors. These findings support a hierarchical model for metastasis, in which metastases are initiated by stem-like cells that proliferate and differentiate to produce advanced metastatic disease. [ABSTRACT FROM AUTHOR]