1. Detecting RNA base methylations in single cells by in situ hybridization.
- Author
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Ranasinghe, Rohan T., Challand, Martin R., Ganzinger, Kristina A., Lewis, Benjamin W., Softley, Charlotte, Schmied, Wolfgang H., Horrocks, Mathew H., Shivji, Nadia, Chin, Jason W., Spencer, James, and Klenerman, David
- Abstract
Methylated bases in tRNA, rRNA and mRNA control a variety of cellular processes, including protein synthesis, antimicrobial resistance and gene expression. Currently, bulk methods that report the average methylation state of ~10
4 –107 cells are used to detect these modifications, obscuring potentially important biological information. Here, we use in situ hybridization of Molecular Beacons for single-cell detection of three methylations (m6 2 A, m1 G and m3 U) that destabilize Watson–Crick base pairs. Our method—methylation-sensitive RNA fluorescence in situ hybridization—detects single methylations of rRNA, quantifies antibiotic-resistant bacteria in mixtures of cells and simultaneously detects multiple methylations using multicolor fluorescence imaging. [ABSTRACT FROM AUTHOR]- Published
- 2018
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