1. Figeno: multi-region genomic figures with long-read support.
- Author
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Sollier, Etienne, Heilmann, Jessica, Gerhauser, Clarissa, Scherer, Michael, Plass, Christoph, and Lutsik, Pavlo
- Subjects
GRAPHICAL user interfaces ,DNA copy number variations ,WHOLE genome sequencing ,SOURCE code ,EPIGENOMICS ,NUCLEOTIDE sequencing ,DATA analysis - Abstract
Summary The vast amount of publicly available genomic data requires analysis and visualization tools. Here, we present figeno, an application for generating publication-quality FIgures for GENOmics. Figeno particularly focuses on multi-region views across genomic breakpoints and on long reads with base modifications. In addition, we support epigenomic data including ATAC-seq, ChIP-seq or HiC, as well as whole genome sequencing data with copy numbers and structural variants. Availability and implementation Figeno is available as a python package with both a command line and graphical user interface. It can be installed via PyPI and the source code is available at https://github.com/CompEpigen/figeno. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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