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Background: Riparian zones are vital transitional habitats that bridge the gap between terrestrial and aquatic ecosystems. They support elevated levels of biodiversity and provide an array of important regulatory and provisioning ecosystem services, of which, many are fundamentally important to human well-being, such as the maintenance of water quality and the mitigation of flood risk along waterways. Increasing anthropogenic pressures resulting from agricultural intensification, industry development and the expansion of infrastructure in tropical regions have led to the widespread degradation of riparian habitats resulting in biodiversity loss and decreased resilience to flooding and erosion. Considering climate change and its associated effects on freshwater systems, the need to build resilience and adaptive capacities is pertinent. This has prompted the need to protect existing riparian habitats and the implementation of solutions to restore these degraded habitats to recover their functional capacity. This systematic map will aim to identify and collate existing literature on approaches for riparian restoration implemented in tropical regions and identify what indicators have been used to measure outcomes for biodiversity and human well-being. The resulting collation of evidence will help to identify current knowledge gaps and inform the direction of future research. Methods: To address the aims of this systematic map, a search of pre-identified bibliographic databases will be undertaken using a set string of search terms. In addition to this, a grey literature search will be conducted using Google Scholar and by searching for references using specialist websites. All literature that is gathered will be screened by title, abstract and full text using a two-phase screening process which adheres to a pre-determined eligibility criteria. Data will then be coded from the collated group of articles using a pre-designed data coding sheet. Heterogeneity will likely be present in the data; therefore, studies will be grouped appropriately based on the restoration strategy implemented and, on the type of outcome measured. These will be presented as sub-groups. A narrative synthesis of map findings will be produced, this will outline the distribution and frequency of restoration interventions, and outcomes measured, and will highlight evidence gaps to direct future research. [ABSTRACT FROM AUTHOR]

Copyright of Biotropica is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Summary: Global biodiversity is at a heightened risk of extinction and we are losing species faster than at any other time. It is important to understand the threats that drive a species towards extinction in order to address those drivers. In this paper, we assess our knowledge of the threats faced by 24 Himalayan Galliformes species by undertaking a review of the threats reported in the published literature and the supporting evidence that the threat is having an impact on the species' populations. Only 24 papers were deemed suitable to be included in the study. We found that biological resource use and agriculture and aquaculture are the predominant threats to the Galliformes in the Greater Himalaya but the evidence available in the studies is quite poor as only one paper quantified the impact on species. This study shows that major gaps exist in our understanding of threats to species, and it is imperative to fill those gaps if we want to prevent species from going extinct. [ABSTRACT FROM AUTHOR]

Species distribution models (SDMs) have been widely used to create maps of expected species incidence, often using citizen science (CS) occurrence data as inputs. Environmental policy is informed by knowledge of community distributions, but there have been fewer attempts to utilise the potential of community distribution models (CDMs) to predict these. Many countries have vegetation community classification systems which include phytosociological information on individual species. Within Great Britain, the National Vegetation Classification (NVC) is the primary standard for vegetation communities, and while maps have been produced at regional scales, cost‐effective techniques are required for national scales.Published NVC occurrence records of 22 upland NVC communities in England and Wales were used as observed occurrences (presence‐only data). Predictors for the CDMs were enhanced vegetation index (EVI), elevation, slope, aspect, temperature and rainfall. Five modelling methods were investigated: generalised linear models (GLMs), support vector machines (SVMs), random forests (RFs), maximum entropy (MaxEnt) and maximum likelihood (MaxLike). Model quality was assessed via bootstrapping via area under the curve (AUC), true skill statistic (TSS) and Kappa index.There were only small differences in the accuracy of the models (median TSS model accuracy 0.742; range 0.280 to 0.873) with RF models the best overall CDM method. Across all NVC communities, summer and winter maximum temperatures and annual rainfall were the most important predictor variables. NVCs with spatially disjunct distributions in both lowlands and uplands, or that responded to localised management or environmental conditions, were poorly predicted.Synthesis and applications. Vegetation communities can be reliably predicted at large spatial scales using CDMs from extant datasets. Management practitioners can use community‐level predictions to design targeted field surveys for individual species typically associated with specific communities. Most existing CS survey schemes focus on species rather than communities. Hence future development of new CS schemes similar to the National Plant Monitoring Scheme (NPMS), that aligns with the NVC, will enable CS data to generate up‐to‐date maps of both communities and species. [ABSTRACT FROM AUTHOR]

Aims: Vegetation sampling typically involves the use of quadrats to estimate species cover abundance. Such surveys do not generally record small‐scale vegetation patch structure at sub‐quadrat scales. Here we test a simple method to quantify patch structure that complements conventional techniques. We compare the two methods, and analyse metrics derived from small‐scale patch surveys with environment/management data. Location: Northumberland, United Kingdom. Methods: We recorded cover abundance of all species in an upland moor with 1‐m2 quadrats. These were divided into 100 'sub‐quadrats', 10 cm × 10 cm, and the dominant and subdominant species identified. Patch metrics (number, area and shape) for individual species recorded as dominant or subdominant in the subquadrat survey were analysed using multi‐variate generalised linear models with environmental and management data. Sub‐quadrat data were also aggregated for each quadrat, to create species composition data. The two sets of compositional data, from whole‐quadrat and sub‐quadrat aggregations, were compared via Procrustes rotation of ordination scores. Results: Patch number, area and shape for dominant and subdominant species were all significantly affected by soil pH, soil water content, slope and elevation. Effects of proximity to sheep tracks and drainage ditches were less consistent amongst species. Ordinations of vegetation data from conventional and sub‐quadrats were similar, with significant Procrustes R2 of 67% and 70% for dominant and subdominant species respectively. Conclusions: Sub‐quadrat surveys can easily be used to complement existing whole‐quadrat surveys at little cost in time or resources. Their patch metrics can provide additional insights into the environmental and management drivers that may affect the growth of individual plants or clumps, potentially in relation to plant traits, and thus alter the overall community composition. The methods we describe can readily be adapted to other sizes of quadrats and sub‐quadrats in a wide range of vegetation communities. [ABSTRACT FROM AUTHOR]

Brown rats are widespread in agroecosystems, but our understanding of factors affecting their activity is incomplete due to cryptic, nocturnal behaviours. Indirect monitoring methods include tracking plates and camera traps. Supplementary feeding of game birds may provide resources for rats away from farm buildings, allowing them to persist in winter when there is little other food available. Developing reliable methods to monitor such populations will facilitate landscape-scale studies of rat populations in farm environments and aid ecologically based approaches for controlling rats on farms. We compared camera traps and tracking plates to monitor brown rat activity near game bird feeders at a mixed farm in Northumberland, UK. Generalized linear models (GLM) were used to compare rat incidence estimated from camera traps and tracking plates. A strong positive relationship was found between the two methods, although tracking plate estimates were less reliable when rat activity was very low. Factors that affected populations of brown rats near game bird feeders were assessed via linear mixed-effect models (LMM) of monthly tracking plate data (October 2017 to September 2018). Populations were highest at the feeders (0 m) compared with further away (10 m, 20 m) and were also higher in periods of cold, wet weather and when more food was available from the feeders. Rodenticide application near feeders did not significantly affect activity, nor did land cover 100 m around each feeder. A highly significant relationship was detected with food supply, suggesting that the use of game bird feeders could potentially have major impacts on rat population dynamics. [ABSTRACT FROM AUTHOR]

Low-input agriculture is prevalent in sub-Saharan Africa but it cannot deliver future food security. Soil nutrients are being mined by small-scale farmers who continue to remove large quantities of nutrients from their soils without using sufficient manure or fertilizer inputs to maintain soil fertility. Declining soil fertility must be addressed in order to achieve sustainable intensification. A large increase in nutrient inputs is seen as a requirement but small-scale farmers face severe constraints in obtaining supplies of mineral fertilizer. Better use of available livestock manure is a possible solution. We present here a case study from Marsabit County in the largest, most arid, and least developed region of Kenya. Evidence was gathered from field studies at four locations during 2016 and 2017 combined with a farmer survey. We show that a typical smallholder farm can achieve satisfactory yields and an acceptable nitrogen balance through better use of available livestock manure. An acceptable balance can also be achieved for phosphorus, however, there is a deficit for potassium. This case study demonstrates that an integrated crop-livestock farming system offers a potential solution to soil nutrient mining and can provide a pathway to sustainable intensification for small-scale farmers in a challenging semi-arid environment. [ABSTRACT FROM AUTHOR]

Upland moors and bogs in the United Kingdom are peatlands of high nature conservation value, many designated under the European Union's Habitat Directive, with internationally important bird populations, which depend on abundant invertebrate populations when breeding.Moorland management in the United Kingdom traditionally employs controlled burning in 10–30 year rotations of heather, Calluna vulgaris, creating habitat mosaics of different species composition and physical structure. This can increase overall invertebrate biodiversity and abundance, for certain key invertebrate groups. Burning has potential negative environmental effects, including peat erosion and contamination of drinking‐water supplies.Rotational cutting of vegetation is now being trialled as an alternative to burning, but its long‐term effects on invertebrates are poorly understood. We surveyed invertebrates on a 16‐year chronosequence of rotational cutting on an extensive area of dwarf shrub vegetation on upland peat soils in Northern England.Invertebrate Simpson diversity was greatest on intermediate‐aged patches, and along edges between cut and uncut areas. Older patches, cut between 2000 and 2008, were dominated by ants (Hymenoptera‐Formicidae), plant‐feeding bugs (Hemiptera‐Auchenorrhyncha) and parasitic wasps (Hymenoptera‐Parasitica). Patches cut more recently, between 2009 and 2016, had significantly lower invertebrate abundance, and were dominated by predatory ground beetles (Coleoptera‐Carabidae), ants and harvestmen (Opiliones).There were significant relationships between vegetation and invertebrate community composition under both invertebrate sampling methods. We recommend that rotational cutting is used as the primary means of management, it should be undertaken in approximately 15–20 year rotations, in irregularly shaped mosaics, to maximise the benefits to invertebrates and associated wildlife. [ABSTRACT FROM AUTHOR]

The aim was to compare potential methods for fluoride analysis in microlitre-volume plasma samples containing nano-gram amounts of fluoride. Methods: A group of 4 laboratories analysed a set of standardised biological samples as well as plasma to determine fluoride concentration using 3 methods. In Phase-1, fluoride analysis was carried out using the established hexamethyldisiloxane (HMDS)-diffusion method (1 mL-aliquot/analysis) to obtain preliminary measurement of agreement between the laboratories. In Phase-2, the laboratories analysed the same samples using a micro-diffusion method and known-addition technique with 200 µL-aliquot/analysis. Coefficients of Variation (CVs) and intra-class correlation coefficients (ICCs) were estimated using analysis of variance to evaluate the amount of variation within- and between-laboratories. Based on the results of the Phase-2 analysis, 20 human plasma samples were analysed and compared using the HMDS-diffusion method and known-addition technique in Phase-3. Results: Comparison of Phase-1 results showed no statistically significant difference among the laboratories for the overall data set. The mean between- and within-laboratory CVs and ICCs were < 0.13 and ≥0.99, respectively, indicating very low variability and excellent reliability. In Phase-2, the overall results for between-laboratory variability showed a poor CV (1.16) and ICC (0.44) for the micro-diffusion method, whereas with the known-addition technique the corresponding values were 0.49 and 0.83. Phase-3 results showed no statistically significant difference in fluoride concentrations of the plasma samples measured with HMDS-diffusion method and known- addition technique, with a mean (SE) difference of 0.002 (0.003) µg/mL. In conclusion, the known-addition technique could be a suitable alternative for the measurement of fluoride in plasma with microlitre-volume samples. [ABSTRACT FROM AUTHOR]

Norovirus (NoV) is themost commonly recognized cause of acute gastroenteritis, with over amillion cases globally per year. Whileusually self-limiting,NoVposes a substantial economic burden because it is highly contagious and there are multiple transmission routes. Infection occurs through inhalation of vomitus; faecal-oral spread; and food, water and environmental contamination. While the incidence of the disease is predictably seasonal, much less is known about the relative contribution of the various exposure pathways in causing disease. Additionally, asymptomatic excretion and viral shedding make forecasting disease burden difficult. We develop a novel stochastic dynamic network model to investigate the contributions of different transmission pathways in multiple coupled social networks representing schools, hospitals, care-homes and family households in a community setting. We analyse how the networks impact on transmission. We used ward-level demographic data from Northumberland, UK to create a simulation cohort. We compared the results with extant data on NoV cases from the IID2 study. Connectivity across the simulated cohort was high. Cases of NoV showed marked seasonality, peaking in early winter and declining through the summer. For the first time, we show that fomites and food appear to be the most important exposure routes in determining the population burden of disease. [ABSTRACT FROM AUTHOR]

Crop rotation systems in organic and conventional farming systems differ in crop types, management and duration. However, changes in arthropod communities over the entire rotation system are poorly understood, as many studies have surveyed only single years or have not covered the entire rotation period. Here, we describe changes in arthropods in two contrasting systems at a split organic‐conventional farm: an 8‐year organically managed rotation with five crops and a 5‐year conventionally managed rotation with three crops. Arthropods were classified into three functional groups, representing epigeal predators, foliar predators/parasitoids and herbivores/pollinators. Epigeal predators were particularly reduced by soil tillage which occurred annually in the conventional rotation, but was intermittent in the organic. Arthropods were most abundant on the conventional rotation, but most taxonomically diverse on the organic. In the conventional system, all functional groups showed a cyclical change in their taxonomic composition that closely matched the crop rotation sequence, whereas in the organic rotation, the cycle was less clear. Whilst the current year's crop type was the major determinant of arthropod community composition, there was a significant "lag effect" for many taxa from the preceding year's crop. Our results suggest that both the amounts of soil tillage (e.g., in no‐till systems) and crop rotation order have major impacts on arthropods in agroecosystems. Rotations with excessive soil tillage are likely to reduce the abundance of some groups of beneficial arthropods, especially epigeal predators. [ABSTRACT FROM AUTHOR]

Limited knowledge is available on total fluoride exposure, excretion and retention in infants, despite the first year of human life being the critical period for dental development and risk of dental fluorosis. This study investigated total daily fluoride intake (TDFI), excretion (TDFE) and retention (TDFR) in infants living in fluoridated and non-fluoridated water areas at pre- and post-weaning stages of development. Healthy infants, aged 0–12 months, were recruited and their TDFI (mg/kg body weight (BW) per d), from diet and toothpaste ingestion, was assessed over a 3-d period using a dietary diary and tooth-brushing questionnaire. TDFE (mg/kg BW per d) was estimated by collecting 48-h urine and faeces. TDFR (mg/kg BW per d) was estimated by subtracting TDFE from TDFI. A total of forty-seven infants completed the study: sixteen at pre-weaning and thirty-one at post-weaning stages, with a mean age of 3·4 and 10·0 months, respectively. TDFI was lower in the non-fluoridated area (P <0·001) and at the pre-weaning stage (P =0·002) but higher in formula-fed infants (P <0·001). TDFE was mainly affected by type of feeding, with higher excretion in formula-fed infants (P <0·001). TDFR was lower in the non-fluoridated area (P <0·001) and at the pre-weaning stage (P <0·001) but higher in formula-fed infants (P =0·001). In conclusion, a relatively large proportion of fluoride intake is retained in the body in weaned infants. This is an important consideration in fluoride-based prevention programmes, with goals to maximise caries prevention while minimising the risk of dental fluorosis. [ABSTRACT FROM AUTHOR]

An “in house” taxonomic approach to drug discovery led to the isolation of diverse actinobacteria from hyper-arid, extreme hyper-arid and very high altitude Atacama Desert soils. A high proportion of the isolates were assigned to novel taxa, with many showing activity in standard antimicrobial plug assays. The application of more advanced taxonomic and screening strategies showed that strains classified as novel species of Lentzea and Streptomyces synthesised new specialised metabolites thereby underpinning the premise that the extreme abiotic conditions in the Atacama Desert favour the development of a unique actinobacterial diversity which is the basis of novel chemistry. Complementary metagenomic analyses showed that the soils encompassed an astonishing degree of actinobacterial ‘dark matter’, while rank-abundance analyses showed them to be highly diverse habitats mainly composed of rare taxa that have not been recovered using culture-dependent methods. The implications of these pioneering studies on future bioprospecting campaigns are discussed. [ABSTRACT FROM AUTHOR]

Background: Campylobacteriosis is a major cause of gastroenteritis in the UK, and although 70% of cases are associated with food sources, the remainder are probably associated with wider environmental exposure.Methods: In order to investigate wider environmental transmission, we conducted a spatio-temporal analysis of the association of human cases of Campylobacter in the Tyne catchment with weather, climate, hydrology and land use. A hydrological model was used to predict surface-water flow in the Tyne catchment over 5 years. We analysed associations between population-adjusted Campylobacter case rate and environmental factors hypothesized to be important in disease using a two-stage modelling framework. First, we investigated associations between temporal variation in case rate in relation to surface-water flow, temperature, evapotranspiration and rainfall, using linear mixed-effects models. Second, we used the random effects for the first model to quantify how spatial variation in static landscape features of soil and land use impacted on the likely differences between subcatchment associations of case rate with the temporal variables.Results: Population-adjusted Campylobacter case rates were associated with periods of high predicted surface-water flow, and during above average temperatures. Subcatchments with cattle on stagnogley soils, and to a lesser extent sheep plus cattle grazing, had higher Campylobacter case rates.Conclusions: Areas of stagnogley soils with mixed livestock grazing may be more vulnerable to both Campylobacter spread and exposure during periods of high rainfall, with resultant increased risk of human cases of the disease. [ABSTRACT FROM AUTHOR]

The data reported in this paper are among the first relating to the microbiology of hyper-arid, very high altitude deserts and they provide base line information on the structure of actinobacterial communities. The high mountain Cerro Chajnantor landscape of the Central Andes in northern Chile is exposed to the world's most intense levels of solar radiation and its impoverished soils are severely desiccated. The purpose of this research was to define the actinobacterial community structures in soils at altitudes ranging from 3000 to 5000 m above sea level. Pyrosequencing surveys have revealed an extraordinary degree of microbial dark matter at these elevations that includes novel candidate actinobacterial classes, orders and families. Ultraviolet-B irradiance and a range of edaphic factors were found to be highly significant in determining community compositions at family and genus levels of diversity. [ABSTRACT FROM AUTHOR]

Demand for organic milk is partially driven by consumer perceptions that it is more nutritious. However, there is still considerable uncertainty over whether the use of organic production standards affects milk quality. Here we report results of meta-analyses based on 170 published studies comparing the nutrient content of organic and conventional bovine milk. There were no significant differences in total SFA and MUFA concentrations between organic and conventional milk. However, concentrations of total PUFA and n-3 PUFA were significantly higher in organic milk, by an estimated 7 (95 % CI −1, 15) % and 56 (95 % CI 38, 74) %, respectively. Concentrations of α-linolenic acid (ALA), very long-chain n-3 fatty acids (EPA+DPA+DHA) and conjugated linoleic acid were also significantly higher in organic milk, by an 69 (95 % CI 53, 84) %, 57 (95 % CI 27, 87) % and 41 (95 % CI 14, 68) %, respectively. As there were no significant differences in total n-6 PUFA and linoleic acid (LA) concentrations, the n-6:n-3 and LA:ALA ratios were lower in organic milk, by an estimated 71 (95 % CI −122, −20) % and 93 (95 % CI −116, −70) %. It is concluded that organic bovine milk has a more desirable fatty acid composition than conventional milk. Meta-analyses also showed that organic milk has significantly higher α-tocopherol and Fe, but lower I and Se concentrations. Redundancy analysis of data from a large cross-European milk quality survey indicates that the higher grazing/conserved forage intakes in organic systems were the main reason for milk composition differences. [ABSTRACT FROM PUBLISHER]

Demand for organic meat is partially driven by consumer perceptions that organic foods are more nutritious than non-organic foods. However, there have been no systematic reviews comparing specifically the nutrient content of organic and conventionally produced meat. In this study, we report results of a meta-analysis based on sixty-seven published studies comparing the composition of organic and non-organic meat products. For many nutritionally relevant compounds (e.g. minerals, antioxidants and most individual fatty acids (FA)), the evidence base was too weak for meaningful meta-analyses. However, significant differences in FA profiles were detected when data from all livestock species were pooled. Concentrations of SFA and MUFA were similar or slightly lower, respectively, in organic compared with conventional meat. Larger differences were detected for total PUFA and n-3 PUFA, which were an estimated 23 (95 % CI 11, 35) % and 47 (95 % CI 10, 84) % higher in organic meat, respectively. However, for these and many other composition parameters, for which meta-analyses found significant differences, heterogeneity was high, and this could be explained by differences between animal species/meat types. Evidence from controlled experimental studies indicates that the high grazing/forage-based diets prescribed under organic farming standards may be the main reason for differences in FA profiles. Further studies are required to enable meta-analyses for a wider range of parameters (e.g. antioxidant, vitamin and mineral concentrations) and to improve both precision and consistency of results for FA profiles for all species. Potential impacts of composition differences on human health are discussed. [ABSTRACT FROM PUBLISHER]

The decline of bumblebees in Europe has been linked primarily to agricultural intensification, although climate change also has the potential to disrupt plant-pollinator interactions, partly through an increased frequency of extreme short-term weather events. There have been few attempts to use time-series models to determine meteorological variables affecting forager activity at hourly time periods over several months., Time-series models require large datasets to be reliable. We describe the use of infrared detectors at nest entrances to record forager exits/returns from 36 captive colonies of Bombus terrestris audax on a mixed farm in northern England, recording over a 78-day period., Over 1.73 million individual records of forager activity were obtained. These were aggregated into 1872 hourly blocks and analyzed with autoregressive time-series models that used nine meteorological factors as explanatory variables., Forager activity was positively linked to air temperature and solar elevation, and negatively associated with rainfall, humidity and wind-speed. The effects of increased variability in meteorological conditions are considered in the context of these results. The time-series models that we describe will be useful in future analyses of the large datasets of foraging behaviour that are becoming available through new technologies such as radio-frequency identification and video tracking. [ABSTRACT FROM AUTHOR]

Poaching with snares has been identified as the main cause of decline of the endemic roan antelope Hippotragus equinuslangheldi in Ruma National Park, Kenya, from > 200 in 1979 to 37 in 2009. However, the spatial snaring patterns in the Park are not clearly understood. The focus of our study was to map the spatial distribution of snares in the Park and to identify the factors influencing this distribution, to develop effective methods of wildlife protection. Using data collected from 56 sample plots during 2006–2008, coupled with geographical information system techniques, we investigated the association between the occurrence of snares and the distribution of geographical features (slope, elevation), infrastructure (roads, fences), essential resources for wildlife (water, salt licks, forage), roan locations and wildlife density. Ripley's L function for assessing complete spatial randomness indicated that snares occurred in clumps (hotspots) up to 4 km apart. Negative binomial regression indicated that these hotspots occurred (1) near water resources, salt licks and the Park boundary, (2) far from roan locations and Park roads, (3) in areas with low gradients and low wildlife density, and (4) in areas with burned vegetation. We recommend concentrating routine security patrol efforts and resources on snare hotspots to reduce snaring and to protect the roan antelope and other threatened wildlife. [ABSTRACT FROM AUTHOR]

Demand for organic foods is partially driven by consumers' perceptions that they are more nutritious. However, scientific opinion is divided on whether there are significant nutritional differences between organic and non-organic foods, and two recent reviews have concluded that there are no differences. In the present study, we carried out meta-analyses based on 343 peer-reviewed publications that indicate statistically significant and meaningful differences in composition between organic and non-organic crops/crop-based foods. Most importantly, the concentrations of a range of antioxidants such as polyphenolics were found to be substantially higher in organic crops/crop-based foods, with those of phenolic acids, flavanones, stilbenes, flavones, flavonols and anthocyanins being an estimated 19 (95 % CI 5, 33) %, 69 (95 % CI 13, 125) %, 28 (95 % CI 12, 44) %, 26 (95 % CI 3, 48) %, 50 (95 % CI 28, 72) % and 51 (95 % CI 17, 86) % higher, respectively. Many of these compounds have previously been linked to a reduced risk of chronic diseases, including CVD and neurodegenerative diseases and certain cancers, in dietary intervention and epidemiological studies. Additionally, the frequency of occurrence of pesticide residues was found to be four times higher in conventional crops, which also contained significantly higher concentrations of the toxic metal Cd. Significant differences were also detected for some other (e.g. minerals and vitamins) compounds. There is evidence that higher antioxidant concentrations and lower Cd concentrations are linked to specific agronomic practices (e.g. non-use of mineral N and P fertilisers, respectively) prescribed in organic farming systems. In conclusion, organic crops, on average, have higher concentrations of antioxidants, lower concentrations of Cd and a lower incidence of pesticide residues than the non-organic comparators across regions and production seasons. [ABSTRACT FROM PUBLISHER]

Copyright of African Journal of Ecology is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

The article discusses a study concerning the genetic variation, population differentiation, and sex specific dispersal patterns in the forest ground beetle Pterostichus oblongopunctatus. It is stated that the screening of five microsatellite loci in beetles from 21 sample locations revealed low levels of genetic differentiation. It further states that tests of sex biased dispersal revealed male biased dispersal and sex specific spatial genetic patterns.

We have little idea how landscape-scale factors influence the success of wild bumblebee nests over time. Here for the first time we use molecular markers to estimate within-season changes in the numbers of nests. Workers of two bumblebee species were sampled in an arable landscape in late May-June and late July-August, and the numbers of nests represented in each sample were estimated. We compare the methods available to estimate nest number from such samples and conclude that methods which allow for heterogeneity in the probability of capture of nests provide the best fit to our data. Changes in numbers of nests at the two time points were used to infer nest survival. The two bee species appeared to differ markedly in survival over time, with estimates of 45% of nests surviving for Bombus lapidarius and 91% for B. pascuorum. However, our data suggest that the foraging range of B. pascuorum may be greater in late season, which would lead us to overestimate nest survival in this species. Differential survival may also reflect differences in phenology between the two species. The land use class which had the most consistent effects on nest number and survival was gardens; for B. lapidarius, the area of gardens within a 750 and 1000 m radius positively influenced nest survival, while for B. pascuorum, the number of nests in late samples was higher at sites with more gardens within a 500 and 750-m radius. For B. pascuorum, the area of grassland within a 250 and 500-m radius also positively influenced nest number in late samples, probably because this is the preferred nesting habitat for this species. The importance of gardens is in accordance with previous studies which suggest that they now provide a stronghold for bumblebees in an otherwise impoverished agricultural environment; furthermore, our data suggest that the positive influence of gardens on bumblebee populations can spill over at least 1 km into surrounding farmland. Synthesis and applications. The substantial effects that even small areas of local resources such as rough grassland or clover leys can have on bumblebee nest numbers and survival is of clear relevance for the design of pollinator management strategies. [ABSTRACT FROM AUTHOR]

Background: Insect pollinator abundance, in particular that of bees, has been shown to be high where there is a superabundance of floral resources; for example in association with mass-flowering crops and also in gardens where flowering plants are often densely planted. Since land management affects pollinator numbers, it is also likely to affect the resultant pollination of plants growing in these habitats. We hypothesised that the seed or fruit set of two plant species, typically pollinated by bumblebees and/or honeybees might respond in one of two ways: 1) pollination success could be reduced when growing in a floriferous environment, via competition for pollinators, or 2) pollination success could be enhanced because of increased pollinator abundance in the vicinity. Methodology/Principal Findings: We compared the pollination success of experimental plants of Glechoma hederacea L. and Lotus corniculatus L. growing in gardens and arable farmland. On the farms, the plants were placed either next to a mass-flowering crop (oilseed rape, Brassica napus L. or field beans, Vicia faba L.) or next to a cereal crop (wheat, Triticum spp.). Seed set of G. hederacea and fruit set of L. corniculatus were significantly higher in gardens compared to arable farmland. There was no significant difference in pollination success of G. hederacea when grown next to different crops, but for L. corniculatus, fruit set was higher in the plants growing next to oilseed rape when the crop was in flower. Conclusions/Significance: The results show that pollination services can limit fruit set of wild plants in arable farmland, but there is some evidence that the presence of a flowering crop can facilitate their pollination (depending on species and season). We have also demonstrated that gardens are not only beneficial to pollinators, but also to the process of pollination. [ABSTRACT FROM AUTHOR]

Dispersal ability is a key determinant of the propensity of an organism to cope with habitat fragmentation and climate change. Here we quantify queen dispersal in two common bumblebee species in an arable landscape. Dispersal was measured by taking DNA samples from workers in the spring and summer, and from queens in the following spring, at 14 sites across a landscape. The queens captured in the spring must be full sisters of workers that were foraging in the previous year. A range of sibship reconstruction methods were compared using simulated data sets including or no genotyping errors. The program Colony gave the most accurate reconstruction and was used for our analysis of queen dispersal. Comparison of queen dispersion with worker foraging distances was used to take into account an expected low level of false identification of sister pairs which might otherwise lead to overestimates of dispersal. Our data show that Bombus pascuorum and B. lapidarius queens can disperse by at least 3 and 5 km, respectively. These estimates are consistent with inferences drawn from studies of population structuring in common and rare bumblebee species, and suggest that regular gene flow over several kilometres due to queen dispersal are likely to be sufficient to maintain genetic cohesion of ubiquitous species over large spatial scales whereas rare bumblebee species appear unable to regularly disperse over distances greater than 10 km. Our results have clear implications for conservation strategies for this important pollinator group, particularly when attempting to conserve fragmented populations. [ABSTRACT FROM AUTHOR]

1. Bumblebees provide an important pollination service to both crops and wild plants. Many species have declined in the UK, particularly in arable regions. While bumblebee forage requirements have been widely studied, there has been less consideration of whether availability of nesting sites is limiting. It is important to know which habitats contain the most bumblebee nests per unit area in order to guide conservation and management options; particularly in the light of current emphasis on environmental stewardship schemes for farmed landscapes. However, it is extremely difficult to map the distribution of bumblebee nests. 2. We describe the findings of the National Bumblebee Nest Survey, a structured survey carried out by 719 volunteers in the UK during early summer 2004. The surveyors used a defined protocol to record the presence or absence of bumblebee nests in prescribed areas of gardens, short grassland, long grassland and woodland, and along woodland edge, hedgerows and fence lines. The records allowed us to estimate the density of bumblebee nests in each of these habitats for the first time. 3. Nest densities were high in gardens (36 nests ha−1), and linear countryside habitats (fence lines, hedgerows, woodland edge: 20–37 nests ha−1), and lower in non-linear countryside habitats (woodland and grassland: 11–15 nests ha−1). 4. Findings on nest location characteristics corroborate those of an earlier survey carried out in the UK ( Fussell & Corbet 1992 ). 5. Synthesis and applications. Gardens provide an important nesting habitat for bumblebees in the UK. In the countryside, the area occupied by linear features is small compared with that of non-linear features. However, as linear features contain high densities of nests, management options affecting such features may have a disproportionately large effect on bumblebee nesting opportunities. Current farm stewardship schemes in the UK are therefore likely to facilitate bumblebee nesting, because they provide clear guidance and support for ‘sympathetic’ hedgerow and field margin management. [ABSTRACT FROM AUTHOR]

1. Foraging range is a key aspect of the ecology of ‘central place foragers’. Estimating how far bees fly under different circumstances is essential for predicting colony success, and for estimating bee-mediated gene flow between plant populations. It is likely to be strongly influenced by forage distribution, something that is hard to quantify in all but the simplest landscapes; and theories of foraging distance tend to assume a homogeneous forage distribution. 2. We quantified the distribution of bumblebee Bombus terrestris L. foragers away from experimentally positioned colonies, in an agricultural landscape, using two methods. We mass-marked foragers as they left the colony, and analysed pollen from foragers returning to the colonies. The data were set within the context of the ‘forage landscape’: a map of the spatial distribution of forage as determined from remote-sensed data. To our knowledge, this is the first time that empirical data on foraging distances and forage availability, at this resolution and scale, have been collected and combined for bumblebees. 3. The bees foraged at least 1·5 km from their colonies, and the proportion of foragers flying to one field declined, approximately linearly, with radial distance. In this landscape there was great variation in forage availability within 500 m of colonies but little variation beyond 1 km, regardless of colony location. 4. The scale of B. terrestris foraging was large enough to buffer against effects of forage patch and flowering crop heterogeneity, but bee species with shorter foraging ranges may experience highly variable colony success according to location. [ABSTRACT FROM AUTHOR]

We reviewed the literature to determine the importance of invertebrates for moorland-breeding birds and considered our findings with respect to the conservation of such species in the UK. The diets of many moorland birds consist predominantly of invertebrates, with a wide range of taxa recorded in the diets of moorland birds during the breeding season. Relatively few taxa (Arachnida, Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera and Oligochaeta) were widely taken, with Diptera and Coleoptera being the most important. Among these latter two insect orders, Carabidae, Curculionidae, Elateridae and Tipulidae were the most important families. Comparisons of the diets of bird families, treated separately according to whether data were derived from adults or chicks, showed that waders take more interstitial invertebrates than passerines, which themselves take more foliage invertebrates. Although we lack detailed experimental data with which to demonstrate the direct effect of particular moorland management prescriptions on some of these key invertebrate taxa for breeding birds, available data suggest that management regimes that create a mosaic of habitats are likely to be most beneficial. In particular, heterogeneity in vegetation structure and species composition, and the presence of wet flushes associated with the synchronized spring emergence of adults of certain insect species, are likely to increase invertebrate food resources for birds. [ABSTRACT FROM AUTHOR]

Studies farm characteristics and the vegetative diversity of grasslands in North England. Relationship between farm management inputs and base environmental conditions; Identification of species; Advantages of the study.

A major cause of yield loss in wheat worldwide is the fungal pathogen Zymoseptoria tritici, a hemibiotrophic fungus which causes Septoria leaf blotch, the most destructive wheat disease in Europe. Resistance in commercial wheat varieties is poor, however, a link between reduced nitrogen availability and increased Septoria tolerance has been observed. We have shown that Septoria load is not affected by nitrogen, whilst the fungus is in its first, symptomless stage of growth. This suggests that a link between nitrogen and Septoria is only present during the necrotrophic phase of Septoria infection. Quantitative real-time PCR data demonstrated that WRKYs, a superfamily of plant-specific transcription factors, are differentially expressed in response to both reduced nitrogen and Septoria. WRKY39 was downregulated over 30-fold in response to necrotrophic stage Septoria, whilst changes in the expression of WRKY68a during the late biotrophic phase were dependent on the concentration of nitrogen under which wheat is grown. WRKY68a may therefore mediate a link between nitrogen and Septoria. The potential remains to identify key regulators in the link between nitrogen and Septoria, and as such, elucidate molecular markers for wheat breeding, or targets for molecular-based breeding approaches. [ABSTRACT FROM AUTHOR]

Background: With over 800 million cases globally, campylobacteriosis is a major cause of food borne disease. In temperate climates incidence is highly seasonal but the underlying mechanisms are poorly understood, making human disease control difficult. We hypothesised that observed disease patterns reflect complex interactions between weather, patterns of human risk behaviour, immune status and level of food contamination. Only by understanding these can we find effective interventions.Methods: We analysed trends in human Campylobacter cases in NE England from 2004 to 2009, investigating the associations between different risk factors and disease using time-series models. We then developed an individual-based (IB) model of risk behaviour, human immunological responses to infection and environmental contamination driven by weather and land use. We parameterised the IB model for NE England and compared outputs to observed numbers of reported cases each month in the population in 2004-2009. Finally, we used it to investigate different community level disease reduction strategies.Results: Risk behaviours like countryside visits (t = 3.665, P < 0.001 and t = - 2.187, P = 0.029 for temperature and rainfall respectively), and consumption of barbecued food were strongly associated with weather, (t = 3.219, P = 0.002 and t = 2.015, P = 0.045 for weekly average temperature and average maximum temperature respectively) and also rain (t = 2.254, P = 0.02527). This suggests that the effect of weather was indirect, acting through changes in risk behaviour. The seasonal pattern of cases predicted by the IB model was significantly related to observed patterns (r = 0.72, P < 0.001) indicating that simulating risk behaviour could produce the observed seasonal patterns of cases. A vaccination strategy providing short-term immunity was more effective than educational interventions to modify human risk behaviour. Extending immunity to 1 year from 20 days reduced disease burden by an order of magnitude (from 2412-2414 to 203-309 cases per 50,000 person-years).Conclusions: This is the first interdisciplinary study to integrate environment, risk behaviour, socio-demographics and immunology to model Campylobacter infection, including pathways to mitigation. We conclude that vaccination is likely to be the best route for intervening against campylobacteriosis despite the technical problems associated with understanding both the underlying human immunology and genetic variation in the pathogen, and the likely cost of vaccine development. [ABSTRACT FROM AUTHOR]

Abstract: Data collected during 1984 from an active animal rabies surveillance system and human rabies post-exposure prophylaxis program at the US Naval Hospital, Subic Bay Naval Facility, Philippines revealed that potential rabies exposure, most commonly from dog bites or scratches, was reported for 311 US military and civilian personnel and four Filipino employee, working on the facility. Seventy-nine persons (25 per ¢) required complete post-exposure prophylaxis. Brain tissue from two captured dogs implicated in attacks was subsequently found to be positive for rabies antigen on fluorescent antibody testing. [ABSTRACT FROM AUTHOR]

This paper documents the arrival of Diplosoma listerianum into a habitat with no previously known history of the species. Once established, D. listerianum exploited rapid growth rates relative to the other fouling species present, to quickly become the dominant species in a local fouling assemblage. Most resident macrofoulers were out-competed for space and overgrown, although some resistance to overgrowth was demonstrated by the bryozoan Umbonula littoralis and the tunicate Ascidiella aspersa. In this instance, traits traditionally considered to be relevant for community resistance towards invasion, such as diversity, richness, dominant species identity and open space were not important in controlling the spread of D. listerianum. [ABSTRACT FROM PUBLISHER]