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Monitoring SARS-CoV-2 spread and evolution through genome sequencing is essential in handling the COVID-19 pandemic. Here, we sequenced 892 SARS-CoV-2 genomes collected from patients in Saudi Arabia from March to August 2020. We show that two consecutive mutations (R203K/G204R) in the nucleocapsid (N) protein are associated with higher viral loads in COVID-19 patients. Our comparative biochemical analysis reveals that the mutant N protein displays enhanced viral RNA binding and differential interaction with key host proteins. We found increased interaction of GSK3A kinase simultaneously with hyper-phosphorylation of the adjacent serine site (S206) in the mutant N protein. Furthermore, the host cell transcriptome analysis suggests that the mutant N protein produces dysregulated interferon response genes. Here, we provide crucial information in linking the R203K/G204R mutations in the N protein to modulations of host-virus interactions and underline the potential of the nucleocapsid protein as a drug target during infection. In this study, the authors sequence 892 SARS-CoV-2 genomes from Saudi Arabia and describe population dynamics and importations into the country. They identify a nucleocapsid protein mutation associated with increased viral load and host interactions and characterise its role through biochemical analyses. [ABSTRACT FROM AUTHOR]

Molecular diagnosis and surveillance of pathogens such as SARS‐CoV‐2 depend on nucleic acid isolation. Pandemics at the scale of COVID‐19 can cause a global shortage of proprietary commercial reagents and BSL‐2 laboratories to safely perform testing. Therefore, alternative solutions are urgently needed to address these challenges. An open‐source method, magnetic‐nanoparticle‐aided viral RNA isolation from contagious samples (MAVRICS), built upon readily available reagents, and easily assembled in any basically equipped laboratory, is thus developed. The performance of MAVRICS is evaluated using validated pathogen detection assays and real‐world and contrived samples. Unlike conventional methods, MAVRICS works directly in samples inactivated in phenol‐chloroform (e.g., TRIzol), thus allowing infectious samples to be handled safely without biocontainment facilities. MAVRICS allows wastewater biomass immobilized on membranes to be directly inactivated and lysed in TRIzol followed by RNA extraction by magnetic nanoparticles, thereby greatly reducing biohazard risk and simplifying processing procedures. Using 39 COVID‐19 patient samples and two wastewater samples, it is shown that MAVRICS rivals commercial kits in detection of SARS‐CoV‐2, influenza viruses, and respiratory syncytial virus. Therefore, MAVRICS is safe, fast, and scalable. It is field‐deployable with minimal equipment requirements and could become an enabling technology for widespread testing and wastewater monitoring of diverse pathogens. [ABSTRACT FROM AUTHOR]

A reagent‐directed divergent synthesis of three skeletally distinct compounds, namely, amino‐substituted indolizidine alkaloids, decahydropyrazino[2,1,6‐cd]‐pyrrolizine triols and (–)‐pochonicine stereoisomers have been accomplished from a single precursor. Tri‐O‐benzyl‐d‐glucal was converted into a diastereomeric mixture of homoallylic alcohols through a seven‐step sequence developed earlier in our lab. Intramolecular iodo‐amination of the homoallylic alcohols proceeded through a 5‐exo‐tet ring opening of initially formed iodonium ion to give the iodo‐substituted pyrrolizidine {[5,5‐]‐fused} derivatives. Upon exposure to AgOAc, these iodo‐pyrrolizidines underwent a ring enlargement under the reaction condition and delivered polyhydroxylated indolizidine {[5,6]‐fused} derivatives as the main products. On the other hand, when the iodo‐pyrrolizidines were treated with NaH, a smooth intramolecular substitution reaction took place resulting in the formation of novel decahydropyrazino[2,1,6‐cd]pyrrolizine triols in good yields. Diversely, epoxidation of the homoallyic alcohols followed by intramolecular ring opening and subsequent synthetic transformations delivered stereoisomers of (–)‐pochonicine. The structure and stereochemistry of the final compounds were established through detailed 2D‐NMR analysis. [ABSTRACT FROM AUTHOR]

The mitochondrial F-type ATP synthase, a multisubunit nanomotor, is critical for maintaining cellular ATP levels. In T. gondii and other apicomplexan parasites, many subunit components necessary for proper assembly and functioning of this enzyme appear to be missing. Here, we report the identification of 20 novel subunits of T. gondii F-type ATP synthase from mass spectrometry analysis of partially purified monomeric (approximately 600 kDa) and dimeric (>1 MDa) forms of the enzyme. Despite extreme sequence diversification, key FO subunits a, b, and d can be identified from conserved structural features. Orthologs for these proteins are restricted to apicomplexan, chromerid, and dinoflagellate species. Interestingly, their absence in ciliates indicates a major diversion, with respect to subunit composition of this enzyme, within the alveolate clade. Discovery of these highly diversified novel components of the apicomplexan F-type ATP synthase complex could facilitate the development of novel antiparasitic agents. Structural and functional characterization of this unusual enzyme complex will advance our fundamental understanding of energy metabolism in apicomplexan species. [ABSTRACT FROM AUTHOR]

Electrodeposition of gold nanoparticles (Au-NPs) decorated single polypyrrole nanowire (Ppy-NW) for arsenic (As) detection was studied in this paper. Arsenic is a toxic element, which exists in variety of chemical forms. Arsenic forms combined with groundwater and soil is leading to toxicity and creating health risks, hence the requirement of its detection arises. The present study is to develop a highly sensitive Au-NPs decorated Ppy-NW based sensor for detecting the trace amounts of arsenic (As). The chemiresistive method was adopted for detecting the sensitivity of the arsenic traces. A 200 nm in diameter Ppy nanowires were developed using anodic aluminum oxide (AAO) template based synthesis and decorated with Au-NPs and further tested for arsenic sensing. The response of arsenic with the sensors was recorded by chemiresistive method with varying potential between ±100 mV. The sensitivity of Au-NPs decorated Ppy-NW towards arsenic (for two set of As conc. range) was observed to be 0.22 and 4.38 µM and the detection limit of the sensor was observed to be 0.32 µM [ABSTRACT FROM AUTHOR]

A concise total synthesis of the four stereoisomers of (-)-pochonicine was undertaken. The key steps of the synthesis involved chemoselective debenzylation of the primary benzyloxy group and an unprecedented Na-Hg-mediated concomitant N-detosylative intramolecular epoxide ring-opening reaction. Notably, additional steps for the protection of other functional groups were not required. Glycosidase inhibition studies revealed that these compounds are inhibitors of β- N-acetylglucosaminidase with IC50 values in the sub-millimolar range. [ABSTRACT FROM AUTHOR]

A series of novel 3- methyl-7-substituted-4H-1,4-benzothiazine-2- carbohydrazide (3a-e) and corresponding thiosemicarbazides (4-a-q); 2-[3-methyl-7- substituted- 4H -1, 4-benzothiazine-2-yl]-N-(aryl) hydrazine carbothiamide have been synthesized. The thiosemicarbazide when cyclized with iodine via intramolecular cyclisation gave benzothiazonyl oxadiazoles (5-a-q); 5-(3-methyl -7-substitued-4H- 1,4-benzothiazin-2-yl)- N -aryl- 1,3,4- oxadiazol -2-amine and the compounds were tested for antibacterial and antifungal activities against different microorganisms. [ABSTRACT FROM AUTHOR]

A correction is presented to the article "Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii" which appeared in the July 13, 2018 issue.