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Narragansett Bay is an estuarine system in the western North Atlantic Ocean that harbors a diverse marine flora, providing structure, habitat, and food for native biodiversity. This area has been the center of numerous environmental, biological, ecological, and oceanographic studies; however, marine macroalgae have not been extensively examined using modern molecular methods. Here, we document the biodiversity of the red algal order Ceramiales based on DNA sequence comparisons of the 3′ end of the RuBisCo large subunit (rbcL-3P) and the universal plastid amplicon (UPA). Thirty-seven distinct species of this order were identified and validated with molecular data, including five new species reports and at least one new report of an introduced species, Antithamnionella spirographidis, in the vicinity of Narraganset Bay. Novel sequence data were generated for numerous species, and it was discovered that the UPA marker, which has been less frequently used in red algal floristics, revealed an identical inventory of ceramialean algae as the rbcL-3P marker. Thus, the shorter length of the UPA marker holds promise for DNA metabarcoding studies that seek to elucidate biodiversity across algal phyla. [ABSTRACT FROM AUTHOR]

Long-term ecological time series provide a unique perspective on the emergent properties of ecosystems. In aquatic systems, phytoplankton form the base of the food web and their biomass, measured as the concentration of the photosynthetic pigment chlorophyll α (chl α), is an indicator of ecosystem quality. We analyzed temporal trends in chl α from the Long-Term Plankton Time Series in Narragansett Bay, Rhode Island, USA, a temperate estuary experiencing long-term warming and changing anthropogenic nutrient inputs. Dynamic linear models were used to impute and model environmental variables (1959 to 2019) and chl α concentrations (1968 to 2019). A long-term chl α decrease was observed with an average decline in the cumulative annual chl α concentration of 49% and a marked decline of 57% in winter-spring bloom magnitude. The long-term decline in chl α concentration was directly and indirectly associated with multiple environmental factors that are impacted by climate change (e.g., warming temperatures, water column stratification, reduced nutrient concentrations) indicating the importance of accounting for regional climate change effects in ecosystem-based management. Analysis of seasonal phenology revealed that the winter-spring bloom occurred earlier, at a rate of 4.9 ± 2.8 d decade-1. Finally, the high degree of temporal variation in phytoplankton biomass observed in Narragansett Bay appears common among estuaries, coasts, and open oceans. The commonality among these marine ecosystems highlights the need to maintain a robust set of phytoplankton time series in the coming decades to improve signal-to-noise ratios and identify trends in these highly variable environments. [ABSTRACT FROM AUTHOR]

Anthropogenic sources of nutrients cause eutrophication in coastal waters. Narraganset Bay (USA), the largest estuary in New England, has large seasonal zones of hypoxia. In response, management strategies have been implemented to reduce nutrient loadings. In this study, a mechanistic, mass balance fate and transport modeling framework was developed and applied to Narragansett Bay to improve our understanding of the processes governing hypoxia. Discrete and continuous observations were used for model comparison and evaluation. Simulations captured the general trends and patterns in dissolved oxygen (DO) with depth and space. Simulations were unable to capture the wide diurnal range of observed continuous DO and phytoplankton concentrations, potentially suggesting the need for improved understanding of processes at this time scale. Mechanistic modelling scenarios were performed to investigate how different sources of nutrients affect DO. Results suggest tributary sources of nitrogen affected upper layers of DO, while sediment oxygen demand and nutrient fluxes affected deeper waters. This work highlights the importance of understanding and simulating the legacy effects of historic nutrient loading to estuary systems to understand the magnitude and timing of long-term recovery due to reductions in nutrient loadings. [ABSTRACT FROM AUTHOR]

Numerous per‐ and polyfluoroalkyl substances (PFAS) are of growing concern worldwide due to their ubiquitous presence, bioaccumulation and adverse effects. Surface waters in the United States have displayed elevated concentrations of PFAS, but so far discrete water sampling has been the commonly applied sampling approach. In the present study we field‐tested a novel integrative passive sampler, a microporous polyethylene tube, and derived sampling rates (Rs) for nine PFAS in surface waters. Three sampling campaigns were conducted, deploying polyethylene tube passive samplers in the effluent of two wastewater treatment plant (WWTP) effluents and across Narragansett Bay (Rhode Island, USA) for 1 month each in 2017 and 2018. Passive samplers exhibited linear uptake of PFAS in the WWTP effluents over 16–29 days, with in situ Rs for nine PFAS ranging from 10 ml day−1 (perfluoropentanoic acid) to 29 ml day−1 (perfluorooctanesulfonic acid). Similar sampling rates of 19 ± 4.8 ml day−1 were observed in estuarine field deployments. Applying these Rs values in a different WWTP effluent predicted dissolved PFAS concentrations mostly within 50% of their observations in daily composite water samples, except for perfluorobutanoic acid (where predictions from passive samplers were 3 times greater than measured values), perfluorononanoic acid (1.9 times), perfluorodecanoic acid (1.7 times), and perfluoropentanesulfonic acid (0.1 times). These results highlight the potential use of passive samplers as measurement and assessment tools of PFAS in dynamic aquatic environments. Environ Toxicol Chem 2022;41:2375–2385. © 2022 SETAC [ABSTRACT FROM AUTHOR]

Benthic invertebrates support numerous ecosystem functions and services including shellfish production, energy flow to fishes, and biogeochemical cycles. The decline of marine biodiversity worldwide has raised concerns about effects on ecosystems. To examine biodiversity trends of Narragansett Bay over time, a list was compiled of all benthic invertebrate species collected from the bay since 1834. The list covers 104 studies spanning 182 years and currently holds 1214 unique taxa from 21 phyla, the majority of all animal phyla on Earth. A permuted estimator of number of species suggested there are about 300 more yet to be discovered. Widely varying sampling gear and sieve mesh sizes precluded the use of abundance data. Instead, multidimensional scaling and taxonomic distinctness were used with presence-absence data to examine biodiversity trends. The changes in community composition and decline of benthic biodiversity (p < 0.01) since 1855 are what would be expected of a community that gradually deteriorated in the face of increasing anthropogenic stressors. Taxonomic distinctness had negative correlations (p < 0.05) with human population in the watershed, total nitrogen inputs, and inputs of metals. This loss of benthic biodiversity has implications for ecosystem functions and services. As some of the stressors waned in the last two or three decades, following passage of environmental legislation in the 1970s, biodiversity appeared to show a partial recovery. An inventory of species, how it has changed over time, and understanding what caused those changes are important for assessing whether remediation programs are achieving improved water quality and ecosystem health. [ABSTRACT FROM AUTHOR]

The abundance of dominant zooplankton, the copepods Acartia hudsonica and Acartia tonsa, was observed for 19 years (1972–1990) as part of a long-term weekly monitoring program in a north temperate estuary, lower Narragansett Bay, Rhode Island, USA. Acartia abundance data were analyzed via time series and phenology analyses to detect changes in abundance and timing (phenology) of the seasonal appearance, disappearance and duration of the cryophilic (A. hudsonica) and thermophilic (A. tonsa) Acartia congeners. No long-term changes in A. hudsonica abundance (long-term mean abundance of 9244 animals m−3) or phenology were detected during 1972–1990. However, de-seasonalized mean A. tonsa abundance increased 2-fold from near 2500 animals m−3 in the early 1970s to near 5000 animals m−3 in the late 1980s. Acartia tonsa also displayed changes in the timing of its annual appearance and departure as observed at the lower Narragansett Bay monitoring station. During 1972–1990, the time of A. tonsa first appearance in the spring advanced by ~3 weeks moving from Week 25 (mid-June) in the early 1970s to Week 22 (mid-May) in the late 1980s. Additionally, A. tonsa tended to depart from the plankton later in the year in the late 1980s (departure in late February) compared to the departure time observed in the 1970s (mid-January). Together, these changes resulted in an increased duration of A. tonsa presence in the water column, with A. tonsa duration increasing from 31 weeks in the early 1970s to 38 weeks in the late 1980s. These changes in thermophilic A. tonsa abundance and phenology appear to have been initial, stimulatory responses to warming that were subsequently modified by changes in the phenology and abundance of gelatinous zooplankton predators. [ABSTRACT FROM AUTHOR]

In Narragansett Bay, light attenuation by total suspended sediments (TSS), colored dissolved organic matter (CDOM), and phytoplankton chlorophyll-a (chl-a) pigment is 129, 97, and 70%, respectively, of that by pure seawater. Spatial distribution of light attenuation indicates higher values in the upper Bay, where rivers with sediment and nutrient-rich waters enter and elevate TSS, CDOM, and chl-a concentrations. The temporal trends of light attenuation during the summer months (July-August) differed at various locations in the Bay, having the highest values in July. For the same period, spectral methods overestimated attenuation throughout the Bay. These findings quantify the behavior of light attenuation in space and time, providing information that can guide decisions related to improving water clarity and help understanding the effects of various environmental and management scenarios on it. [ABSTRACT FROM AUTHOR]

Sea level rise is a major stressor on many salt marshes, and its impacts include creek widening, ponding, vegetation dieback, and drowning. Marsh vegetation changes have been associated with sea level rise across southern New England, but most of these studies pre-date the current period of rapidly accelerating sea level rise coupled with episodic events of extreme increases in water levels. Here, we combine data from two salt marsh monitoring and assessment programs in Rhode Island that were designed to assess marsh responses to sea level rise and use these data to document temporal and spatial patterns in marsh vegetation during the current period of extreme water level increases. Vegetation monitoring at two Narragansett Bay salt marshes confirms the ongoing decline of the salt meadow species Spartina patens during this period as it becomes replaced by Spartina alterniflora. Bare ground resulting from vegetation dieback was significantly related to mean high water levels and led to the rapid conversion of mixed Spartina assemblages to S. alterniflora monocultures. A broader spatial assessment of RI marshes shows that S. alterniflora dominance increases at lower elevation marshes toward the mouth of Narraganset Bay. Our data provide additional evidence that S. patens continues to decline in southern New England marshes and show that losses can accelerate during periods of extreme high water levels. Unless adaptive management actions are taken, we predict that marshes throughout RI will continue to lose salt meadow habitat and eventually resemble lower elevation marshes that are already dominated by S. alterniflora monocultures. [ABSTRACT FROM AUTHOR]

The first bay-wide synoptic survey of benthic habitat quality in Narragansett Bay, Rhode Island, USA, was conducted in August of 1988. Twenty years later, we revisited the same sampling locations as the original survey using similar sediment profile imagery technology and analysis tools. Like estuaries throughout the US, increased temperatures and reductions to anthropogenic nutrient inputs have cumulatively affected Narragansett Bay in the intervening 20 years. To understand how these changes may have influenced benthic organic enrichment and habitat quality, we compared the prevalence and spatial arrangement of benthic biotopes (i.e., biotic and abiotic benthic descriptions) between 1988 and 2008 surveys. Biotopes dominated by Ampelisca spp. tubiculous amphipods increased >fivefold between 1988 and 2008, and expanded into the more urban, anthropogenically stressed Providence River estuary. Ampelisca beds occurred at critical boundaries in organic enrichment and habitat quality in both years and indicated the quantity of organic matter reaching the benthos. In general, benthic biotopes reflect the degree of benthic-pelagic coupling and are an important link between estuarine water quality and other marine life. As estuaries globally cope with the effects of increased warming and legislated anthropogenic nutrient reductions, rapid assessments of benthic biotopes will be critical for understanding changes to whole-estuary condition as a result of these cumulative stressors. [ABSTRACT FROM AUTHOR]

Niche theory, the oldest, most established community assembly model, predicts that in sympatry, the realized niche will contract due to negative interspecific interactions, but fails to recognize the effects of positive interactions on community assembly. The stress gradient hypothesis predicts that positive interactions expand realized niches in stressful habitats. We tested the predictions of the stress gradient hypothesis in a cobble beach model system across both physical and biological stress gradients. We transplanted seven common littoral species within, adjacent to, and below Spartina alterniflora cordgrass stands in control, cage control, predator exclusion cage, shade, and shaded predator exclusion cage treatments to test the hypothesis that cordgrass expands intertidal organism habitats. On cobble beaches, cordgrass ameliorates physical and predation stresses, expanding the distribution and realized niches of species to habitats in which they cannot live without facilitation, suggesting that niche theory and species distribution models should be amended to accommodate the role of positive interactions in community assembly. [ABSTRACT FROM AUTHOR]

Historically, southern New England has supported one of the most productive American lobster (Homarus americanus) fisheries of the northeast United States. Recently, the region has seen dramatic declines in lobster populations coincident with a trend of increasingly stressful summer warmth and shell disease. We report significant declines in the abundance, distribution, and size composition of juvenile lobsters that have accompanied the warming trend in Narragansett Bay, Rhode Island, since the first comprehensive survey of lobster nurseries conducted there in 1990. We used diver-based visual surveys and suction sampling in 1990, 2011, and 2012, supplemented by post-larval collectors in 2011 and 2012. In 1990, lobster nurseries extended from the outer coast into the mid-sections of the bay, but by 2011 and 2012 they were largely restricted to the outer coast and deeper water at the mouth of the bay. Among five new study sites selected by the lobster fishing industry for the 2011 and 2012 surveys, the deepest site on the outer coast (15–17 m depth) harboured some of the highest lobster densities in the survey. Separate fixed site hydrographic monitoring at 13 locations in the bay by the Rhode Island Division of Fish and Wildlife recorded an approximately 2.0°C increase in summer surface temperatures over the period, with 2012 being the warmest on record. Additional monitoring of bottom temperatures, dissolved oxygen and pH at our sampling sites in 2011 and 2012 indicated conditions falling below physiological optima for lobsters during summer. The invasion of the Asian shore crab, Hemigrapsus sanguineus, since the 1990s may also be contributing to declines of juvenile lobster shallow zones (<5 m) in this region. Because lobster populations appear increasingly restricted to deeper and outer coastal waters of southern New England, further monitoring of settlement and nursery habitat in deep water is warranted. [ABSTRACT FROM AUTHOR]

Recent concerns about declining pH in the surface ocean in response to anthropogenic increases of carbon dioxide (CO) in the atmosphere have raised the question of how this declining baseline of oceanic pH might interact with the much larger diel and seasonal variations of pH in coastal marine ecosystems. Nutrient enrichment, which can amplify both production and respiration, has the potential to reduce or exacerbate the impacts of ocean acidification in coastal waters. Here, we present results from a multi-year experiment in which replicate phytoplankton-based mesocosms with a 5-m deep well-mixed water column (salinity = 27-31) and intact benthic community were exposed to a gradient in daily inorganic nitrogen (N), phosphorous (P), and silica (Si) addition. We show that the response of water column pH to nutrient enrichment was the greatest during the autotrophic winter-spring period, and there was no significant decline in pH across treatments during the heterotrophic summer-fall period. We believe that the differences in response lie in the seasonal cycles of production and respiration, where spring production peaks are large and discrete, and respiration is more temperature-driven but occurs diffusely throughout the year. The observed basification associated with enhanced nutrient inputs may have consequences for phytoplankton community structure, some species of submersed aquatic vegetation, cycling of Si, and perhaps other ecological processes. [ABSTRACT FROM AUTHOR]

Macroalgal bloom-forming species occur in coastal systems worldwide. However, due to overlapping morphologies in some taxa, accurate taxonomic assessment and classification of these species can be quite challenging. We investigated the molecular and morphological characteristics of 153 specimens of bloom-forming Ulva located in and around Narragansett Bay, RI, USA. We analyzed sequences of the nuclear internal transcribed spacer 1 region ( ITS1) and the chloroplast-encoded rbcL; based on the ITS1 data, we grouped the specimens into nine operational taxonomic units ( OTUs). Eight of these OTUs have been previously reported to exist, while one is novel. Of the eight OTUs, all shared sequence identity with previously published sequences or differed by less than 1.5% sequence divergence for two molecular markers. Previously, 10 species names were reported for Ulva in Rhode Island (one blade and nine tube-forming species) based upon morphological classification alone. Of our nine OTUs, three contained blade-forming specimens ( U. lactuca, U. compressa, U. rigida), one OTU had a blade with a tubular stipe, and six contained unbranched and/or branched tubular morphologies (one of these six, U. compressa, had both a blade and a tube morphology). While the three blade-forming OTUs in Narragansett Bay can frequently be distinguished by careful observations of morphological characteristics, and spatial/temporal distribution, it is much more difficult to distinguish among the tube-forming specimens based upon morphology or distribution alone. Our data support the molecular species concept for Ulva, and indicate that molecular-based classifications of Ulva species are critical for proper species identification, and subsequent ecological assessment or mitigation of Ulva blooms. [ABSTRACT FROM AUTHOR]

Urban marine habitats are often utilized by wildlife for foraging and other activities despite surrounding anthropogenic impact or disturbance. However little is known of the ecological factors that determine habitat value of these and other remnant natural habitats. We examined the preferential use of urban marine habitats in a northeast US estuary to try to elucidate the factors driving enhanced foraging activity at these sites. Using a bioenergetic model, we compared energy intake to energy expenditure and examined differences in behavior and foraging success of great egrets Ardea alba at three urban and three rural salt marshes in Narragansett Bay, Rhode Island USA. Mean per site available nekton energy averaged 4.44 ± 0.97 GJ site and was significantly higher at urban than at rural sites. While energy expenditure by birds was similar across all sites, mean strike and prey capture rate were significantly greater at urban sites, and 70.1 ± 12.2 % of strikes by egrets at urban sites were successful. Egrets foraging at urban sites consumed significantly more energy (23.2 ± 6.62 W bird) than those at rural sites. Model results indicated a net energy gain by egrets foraging at urban sites, versus a net energy loss at rural sites. Our results may help explain previously observed increases in the numbers of egrets foraging at urban marine habitats, and help provide input into decisions about the extent to which these areas should be considered for restoration or protection. [ABSTRACT FROM AUTHOR]

Over the past three decades, Narragansett Bay has undergone various ecological changes, including significant decreases in water column chlorophyll a concentrations, benthic oxygen uptake, and benthic nutrient regeneration rates. To add to this portrait of change, we measured the net flux of N across the sediment-water interface over an annual cycle using the N/Ar technique at seven sites in the bay for comparison with measurements made decades ago. Net denitrification rates ranged from about 10-90 μmol N-N m h over the year. Denitrification rates were not significantly different among sites and had no clear correlation with temperature. Net nitrogen fixation (−5 to −650 μmol N-N m h) was measured at three sites and only observed in summer (June-August). Neither denitrification nor nitrogen fixation exhibited a consistent relationship with sediment oxygen demand or with fluxes of nitrite, nitrate, ammonium, total dissolved inorganic nitrogen, or dissolved inorganic phosphate across all stations. In contrast to the mid-bay historical site where denitrification rates have declined, denitrification rates in the Providence River Estuary have not changed significantly over the past 30 years. [ABSTRACT FROM AUTHOR]

Because the rise of cities in North America was much later than in many other parts of the world, their connections to the hinterland were influenced early in their development by railroads and steam-powered water transport. These fossil fuel-based links made it possible to widely separate the 'upstream' autotrophic supporting systems from the heterotrophic cities. Here, we take a different look at the connection between a city (Providence, RI, USA) and its supporting natural systems by focusing on the export of industrial and metabolic wastes from the city to the 'downstream' coastal ecosystem in Narragansett Bay. In this way, we can track the history of a city by examining the concentrations of nutrients, metals, and hydrocarbons in the water and sediments of the estuary. In the greater Providence metropolitan area at the head of Narragansett Bay, there was rapid population and industrial expansion during the 1800s without the proper infrastructure to deal with water supply for public safety and health. On the other hand, the absence of a public water supply kept industrial and metabolic wastes largely on land. However, from the fall of 1871, on with the construction of a public water supply and sewer system, human wastes began flowing into the estuary. By reconstructing the historical record of metals and other pollutants, we illustrate clear temporal and spatial gradients of urban impact on the bay. Unfortunately, while numerous studies during the 1970s and 1980s focused on documenting metal and hydrocarbon pollution in the bay, there has been little effort to quantify the impact of mitigation efforts that have greatly reduced the input of metals and hydrocarbons to the system. Nutrient reductions are more recent and ongoing. [ABSTRACT FROM AUTHOR]

A photosynthetic quotient (PQ) for Narragansett Bay, RI, USA was calculated using concurrent 14C and oxygen light–dark bottle primary production estimations. The current PQ (1.42 ± 0.09) was elevated over the PQ (1.24) calculated in a 1980's mesocosm experiment, stimulating a sensitivity analysis of physiological drivers of the PQ. We speculate that the factor that altered the PQ between surveys was wastewater treatment facility upgrades increasing NO3− effluent proportion from 10 to 40%. [ABSTRACT FROM AUTHOR]

Ocean acidification is predicted to impact the nitrogen cycle in a variety of ways. Specifically, manipulations of water column pH have shown that nitrification, the microbial conversion of ammonium to nitrate, is inhibited at low pH. A decrease in nitrification may impact phytoplankton composition and production, denitrification, and the production of nitrous oxide. We compiled an existing unique data set of concurrent water column nitrification rates and water column pH values from a temperate New England estuary (Narragansett Bay, RI, USA). Contrary to the current hypothesis, we found that nitrification rates were highest at low pH and significantly ( P = 0.0031) lower at high water column pH. In this study, pH varied up to 0.85 units, 20% more than the maximum predicted ocean pH decrease of 0.7 units. These results highlight that nitrifying organisms in coastal systems tolerate a wide range of pH values. Moreover, the degree of negative correlation with pH may depend on site-specific environmental conditions. Combined, these findings indicate that the current hypothesis of the negative impacts of ocean acidification on nitrification, at least for the coastal ocean, might need reevaluation. [ABSTRACT FROM AUTHOR]

Strong benthic-pelagic coupling is an important characteristic of shallow coastal marine ecosystems. Building upon a rich history of benthic metabolism data, we measured oxygen uptake and nutrient fluxes across the sediment-water interface along a gradient of water column primary production in Narragansett Bay, RI (USA). Despite the strong gradients seen in water column production, sediment oxygen demand (SOD) and benthic nutrient fluxes did not exhibit a clear spatial pattern. Some of our sites had been studied in the 1970s and 1980s and thus allowed historical comparison. At these sites, we found that SOD and benthic fluxes have not changed uniformly throughout Narragansett Bay. In the uppermost portion of the bay, the Providence River Estuary, we observed a significant decrease in dissolved inorganic phosphorus fluxes which we attribute to management interventions. At another upper bay site, we observed significant declines in SOD and dissolved inorganic nitrogen fluxes which may be linked to climate-induced decreases in water column primary production and shifts in bloom phenology. In the 1970s, benthic nutrient regeneration supplied 50% to over 200% of the N and P needed to support primary production by phytoplankton. Summer nutrient regeneration in the Providence River Estuary and Upper bay now may only supply some 5-30% of the N and 3-20% of the P phytoplankton demand. [ABSTRACT FROM AUTHOR]

Low dissolved oxygen events were characterized in Narragansett Bay (NB), a moderate-size (370 km²) temperate estuary with a complex passage/embayment geometry, using time series from 2001 to 2006 at nine fixed-site monitoring stations. Metrics for event intensity and severity were the, event-mean deficit relative to a threshold (mg O2 1-1) and the deficit-duration (mg O2 1-1) day; product of deficit and duration [day]). Hypoxia (threshold 2.9 mg O2 1-1) typically occurred intermittently from late June through August at most stations, as multiple (two to five per season) events each 2 to 7 days long with deficit-duration 2 to 5 mg O2 1-1 day. Conditions were more severe to the north and west, a pattern attributed to a north-south nutrient/productivity gradient and east-west structure of residual circulation. Spatial patterns for suboxic and severely hypoxic events (thresholds 4.8 and 1.4 mg O2 l-1) were similar. The view that different processes govern event variability in different regions, each influenced by local hydrodynamics, is supported by both weak spatial synchronicity (quantified using overlap of event times at different sites) and multiple linear regressions of biological and physical parameters against event severity. Interannual changes were prominent and season-cumulative hypoxia severity correlated with June-mean river runorf and June-mean stratification. Benthic ecological implications for areas experiencing events include: NB hypoxia classifies as periodic/episodic on a near-annual basis; highest direct mortality risk is to sensitive and moderately sensitive sessile species in the northern West Passage and western Greenwich Bay, with some risk to Upper Bay; direct risk to mobile species may be ameliorated by weak spatial synchronicity; and indirect impacts, including reduced growth rates and shifts in predator-prey balances, are very likely throughout the sampled area due to observed suboxic and hypoxic conditions. [ABSTRACT FROM AUTHOR]

We developed an assessment model to quantify the wildlife habitat value of New England salt marshes based on marsh characteristics and the presence of habitat types that influence habitat use by terrestrial wildlife. Applying the model to 12 salt marshes located in Narragansett Bay, RI resulted in assessment scores that ranged over a factor of 1.5 from lowest to highest. Pre-classifying the results based on marsh size and morphology helped to compare assessment scores between marshes, and demonstrated that even the lower ranking marshes had substantial habitat value. Stepwise multiple regression analysis of assessment scores and model components demonstrated that salt marsh morphology, the degree of anthropogenic modification, and salt marsh vegetative heterogeneity were significant variables and accounted for 91.3% of the variability in component scores. Our results suggest that targeting these components for restoration may lead to improved assessment scores for our study marshes. We also examined the use of lower resolution remote sensing data in the assessment in order to minimize the time and effort required to complete the model. Scores obtained using smaller-scale, lower resolution data were significantly lower than those obtained using larger-scale, higher resolution data ( df = 11; t = 2.2; p < 0.001). The difference was significantly positively correlated with the portion of the assessment score that could be attributed to trees, pools, and pannes and marsh size ( r2 =0.50, F = 4.6, p = 0.04), and could indicate a bias against smaller, more heterogeneous marshes. We conclude that potential differences need to be weighed against the time benefit of using this type of data, bearing in mind the marsh size and the goals of the assessment. Overall, our assessment can provide information to aid in prioritizing marshes for protection and restoration, identify marshes that may harbor significant biodiversity, or help monitor changes in habitat value over time. [ABSTRACT FROM AUTHOR]

Environmental factors, including the supply of organic matter and inorganic nutrient concentrations, are thought to influence rates of two opposing processes in the nitrogen (N) cycle, denitrification and N fixation. Using sediment cores from a temperate estuary we examined the effects of nitrate, phosphate, and ammonium enrichment of the overlying water on the net N2 flux across the sediment–water interface. In addition, we used sediment cores and large marine mesocosms to determine the effect of organic matter amendment. The addition of nitrate (50 μM), ammonium (50 μM), and phosphate (10 μM) to the overlying water had no effect on the net N2 flux. However, high ammonium fluxes (145 μmol m−2 h−1) were observed in the nitrate-amended cores, which is suggestive of dissimilatory nitrate reduction to ammonium. Organic matter enrichment first increased rates of N fixation, but ultimately switched the sediments from being a net source (N fixation dominated) to a net sink (denitrification dominated) of N. We observed a threshold where N fixation took place when organic matter deposition fell below about 0.3 g C m−2 day−1. On the basis of these results and the findings of others, we developed a conceptual model that links net sediment N2 flux with the organic matter production of a system. [ABSTRACT FROM AUTHOR]

Natural stress gradients can reduce predation intensity and increase prey abundances. Whether the harsh conditions of anthropogenic habitat degradation can similarly reduce predation intensity and structure community dynamics remains largely unexplored. Oxygen depletion in coastal, waters (hypoxia) is a form of degradation that has recently emerged as one of the greatest threats to coastal ecosystems worldwide due to increased rates of eutrophication and climate change. I conducted field experiments and surveys to test whether relaxed predation could explain the paradoxically high abundance of clams that have' sustained a fishery in a degraded estuary with chronic hypoxic conditions. Hypoxia reduced predation on all experimental species but enhanced the long-term survivorship of only sufficiently hypoxia-tolerant prey due to periodic extreme conditions. As a consequence, only the harvested quahog clam (Mercenaria inercenaria) thrived in hypoxic areas that were otherwise rendered dead zones with depauperate diversity and low abundances of other species. This suggests that enhanced populations of some key species may be part of a predictable nonlinear community response that sustains ecosystem services and masks overall downward trends of habitat degradation. [ABSTRACT FROM AUTHOR]

During the last several decades, the waters of mid Narragansett Bay, Rhode Island have increased in temperature and decreased in chlorophyll concentration, and it is possible that these changes affected the growth and success of a common benthic filter feeder, the hard clam, Mercenaria mercenaria. We determined recent hard clam growth rates through a sclerochronological analysis and compared them to the rich historical record of Narragansett Bay growth rates in order to understand how these opposing changes influenced hard clam growth. We found no significant differences in short-term growth between 1985 and 2000. Long-term juvenile growth showed a significant decrease between the 1960s and 1990s, while long-term adult (mature) growth showed a significant increase over this same time period. While it is not clear why the changes in juvenile and adult growth rates differ, it appears as though the decrease in chlorophyll concentration, together with a change in phytoplankton community composition, increasing water temperature, and an increase in predator abundance, may all have influenced hard clam growth between the 1960s and the 1990s. [ABSTRACT FROM AUTHOR]

The genetic population structure of winter flounder larvae was examined in Narragansett Bay, RI. Winter flounder larvae collected from 20 stations within Narragansett Bay and one station outside of the Bay were analyzed for six micro-satellite loci. When analyzed by geographic collection sites, there were 16 distinct genetic populations of winter flounder larvae (RST values from 0.1 to 0.6). The presence of distinct genetic populations was supported by assignment of individual larvae to populations by Bayesian analysis. Bayesian analysis resulted in 14 distinct genetic populations that overlapped with the geographically distributed populations (RST values from 0.1 to 0.6). Young-of-the-year juveniles collected in the same year as the larvae were also analyzed at the same six microsatellite loci. Juveniles were assigned to larvae populations by both a Bayesian approach and a neural network approach. Juveniles collected from within Narragansett Bay were found to arise from geographically adjacent Narragansett Bay winter flounder larval populations (>99%), suggesting no widespread movement of juveniles away from spawning grounds. These results are discussed in the context of winter flounder population biology in Narragansett Bay, RI. [ABSTRACT FROM AUTHOR]

Auker, L. A., and Oviatt, C. A. 2008. Factors influencing the recruitment and abundance of Didemnum in Narragansett Bay, Rhode Island. – ICES Journal of Marine Science, 65: 765–769.The non-indigenous colonial tunicate Didemnum sp. A has been observed in Narragansett Bay, Rhode Island, since 2000. We compared weekly recruitment of the species and environmental parameters (i.e. temperature, salinity, chlorophyll a, dissolved oxygen, pH, and nutrient concentrations) over a 6-month period among three sites: (i) the University of Rhode Island Graduate School of Oceanography dock (GSO), (ii) the Department of Environmental Management pier at Fort Wetherill (FW), and (iii) the Prudence Island T-wharf. At the GSO and FW, divers surveyed the sites for percentage cover of Didemnum. To assess the spread of Didemnum in the bay and what factors may predict the tunicate’s presence, we also surveyed intertidal sites in October and November 2005, noting Didemnum presence, salinity, number of boats and moorings, and distances to major ports at each site. GSO had the highest percentage cover of adults and the highest recruitment of the tunicate (p < 0.01), reaching average peak values of 319 individuals per 100 cm2 in September 2005. Temperature and salinity demonstrated the best correlation with recruitment, and higher boat and mooring numbers may be a reliable predictor of tunicate presence. Further monitoring is needed to assess the potential spread of Didemnum throughout Narragansett Bay. [ABSTRACT FROM PUBLISHER]

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Narragansett Bay has been heavily influenced by human activities for more than 200 years. In recent decades, it has been one of the more intensively fertilized estuaries in the USA, with most of the anthropogenic nutrient load originating from sewage treatment plants (STP). This will soon change as tertiary treatment upgrades reduce nitrogen (N) loads by about one third or more during the summer. Before these reductions take place, we sought to characterize the sewage N signature in primary (macroalgae) and secondary (the hard clam, Mercenaria mercenaria) producers in the bay using stable isotopes of N (δ15N) and carbon (δ13C) The δ13N signatures of the macroalgae show a clear gradient of approximately 4‰ from north to south, i.e., high to low point source loading. There is also evidence of a west to east gradient of heavy to light values of δ15N in the bay consistent with circulation patterns and residual flows. The Providence River Estuary, just north of Narragansett Bay proper, receives 85% of STP inputs to Narragansett Bay, and lower δ15N values in macroalgae there reflected preferential uptake of 14N in this heavily fertilized area. Differences in pH from N stimulated photosynthesis and related shifts in predominance of dissolved C species may control the observed δ13C signatures. Unlike the macroalgae, the clams were remarkably uniform in both δ15N (13.2±0.54‰ SD) and δ13C (-16.76±0.61‰ SD) throughout the bay, and the δ15N values were 2-5‰ heavier than in clams collected outside the bay. We suggest that this remarkable uniformity reflects a food source of anthropogenically heavy phytoplankton formed in the upper bay and supported by sewage derived N. We estimate that approximately half of the N in the clams throughout Narragansett Bay may be from anthropogenic sources. [ABSTRACT FROM AUTHOR]

In the past century, loading of terrestrial inorganic nitrogen to coastal receiving waters has increased dramatically. Salt marshes, because of their location between upland regions and coastal waters and their recognized role as nutrient transformers, have the potential to ameliorate some of this loading. In the current study, we used core incubations in the laboratory to investigate denitrification rates in high marsh soils from five fringing salt marshes in Narragansett Bay, Rhode Island, USA. The marshes showed a wide variety of terrestrial N loading, with rates ranging from 2 to 6037 kg N ha-1 yr-1. Field-collected cores were selected to include both vegetated and bare soils at each marsh, and the six-hour incubations were designed to approximate natural tidal rhythms. Total dissolved nitrogen flux in these marshes ranged between +1255 and -710 µmol N m-2 hr-1, with N2 gas accounting for the majority of the total N flux (average 76%). Nitrogen gas flux ranged between -375 (nitrogen fixation) and +420 (denitrification) µmol N2 m-2 hr-1. While N2 gas fluxes were significantly correlated (r = +0.64, p < 0.05) with marsh organic carbon content, we also detected a significant inverse relationship (r = -0.91, P < 0.05) between average N2 gas fluxes and terrestrial nitrogen loads. Comparison of N2 gas fluxes in vegetated vs. bare soils indicated a significant (P < 0.05) but variable effect of vegetation on N2 flux. This field survey shows the potential of New England fringe salt marshes to intercept and transform land-derived nitrogen loads; however, sediment characteristics (e.g., percent of labile organic matter) and plant community structure can significantly affect the capacity of the marsh to process inorganic nitrogen loads. In order to understand the role of salt marshes in buffering coastal N loading, we... [ABSTRACT FROM AUTHOR]

Fish and shellfish abundance for Narragansett Bay and coastal Rhode Island waters from landing data and surveys were compared over the past century using the originally abundant species. The first quantitative data became available in the late 1800s as conflicts developed between the hook-and-line fishermen and the fish trap fishermen with the hook- and-line fishermen claiming a reduction in the availability of fish. Subsequent data were available from the state of Rhode Island and National Marine Fisheries Service landing data, and from the Graduate School of Oceanography and Rhode Island Department of Environmental Management surveys. In the early records, several anadromous fish species were abundant which are no longer abundant or not reported in recent surveys such as alewife, shad, and smelt. Changes in shellfish include the disappearance of soft-shell clam, cultured oyster, and scallop and a replacement by quahog although the landing of quahog is recently down. Lobster was abundant in the early record and has increased in abundance in the recent records. Several species of fish that once dominated the catch have decreased. Boreal species like winter flounder have decreased with increasing water temperatures over the past 30 years. Migratory fish like menhaden and food fish like scup have decreased to low levels in the late 1900s compared to the 1800s. Predictions of fish yield from primary production indicate that migratory populations sustained the fishery in the late 1800s but in the late 1900s these populations no longer exist to sustain such a fishery. Survey data indicate these waters without fish have become prime habitat for crabs and lobsters. The legislatures of Massachusetts and Rhode Island in 1869-1870 requested a law be passed prohibiting fixed apparatus for catching fish. (Spencer F. Baird, 1873). The compelling argument is not regulation and terse fact; rather we? must accept our responsibilities and obligations, as users and temporary... [ABSTRACT FROM AUTHOR]

Public participation in water quality planning for upper Narragansett Bay, Rhode Island (RI), has changed from hearings to a stakeholder approach. As a result of this innovation in process, knowledge about environmental science and about citizen preferences is more widely shared. High levels of stakeholder motivation to contribute, as evidenced by meeting attendance and participation, developed from this new distribution of power and knowledge. Synergisms among process, knowledge, and motivation contributed to a much more acceptable plan for enhancing water quality. In Narragansett Bay the solution adopted to improve water quality was to store and treat combined sewer overflows (CSOs). This stakeholders' plan requires a 2-year period of monitoring after the initial phase of building the system. Subsequent construction will complete the project as originally planned or revise it in an adaptive manner if more effective solutions than were originally envisioned become available. [ABSTRACT FROM AUTHOR]

The article discusses Computer-Aided Tomography (CT) scanning technology was applied to intact sediment cores to study estuary benthic communities. It discusses use of attenuation of X-rays to differentiate between sediment and water contained in macrobenthic tubes and tunnels. It also mentions measurement of percentage of tube and tunnel area (PTTA) to assess and monitor the effects of organic carbon loading on benthic communities in Narragansett Bay, Rhode Island.

Weekly measurements of Chl a were carried out between 1973 and 1990 in Narragansett Bay, Rhode Island, a temperate estuary along the north-eastern US coast. There was only a threefold variation in mean annual chlorophyll values but a considerably greater variation in the period when the annual maximum was reached. The inter-annual variation in annual means was relatively modest compared with monthly means. For a given month, the inter-annual variability in monthly mean chlorophyll varied from 3- to 30-fold; it was least during the summer months and maximal during the winter–spring bloom period. The long-term variability patterns characterizing individual months differed in their trends, cycles, and irregular fluctu-ations. Major blooms occurred during most of the year, and were not restricted to the annual winter–spring bloom. However, the frequency and magnitude of blooms were higher during winter–spring months than during summer months. A significant finding is that the annual mean chlorophyll decreased by more than 1 mg m−2 year−1 over the 18 year time series. This decrease apparently was under multifactorial control, with zooplankton grazing, sea surface temperature and windspeed being the most important factors. [ABSTRACT FROM PUBLISHER]

Some features of the patterns of variability which characterize phytoplankton species occurrences, community organization, biomass levels, blooms, and associated physico-chemical growth regulators are considered. Phytoplankton variability occurs in various patterns: as cycles, trends, fluctuations, unusual events, irregular pulses; at various scales: hourly or less, daily, seasonally, annually, decadal, etc.; even chaotically, and at various frequencies. Variability in winter–spring bloom inception, duration and magnitude is discussed, and 11 types of species-specific patterns of variability are described, with some examples from Narragansett Bay highlighted. It is suggested that the variable response capabilities of planktonic communities act as restructuring mechanisms which allow the community and its foodweb linkages to modify their dynamics to accommodate the changed(-ing) environmental conditions. The distinction between point and threshold events embedded within patterns of plankton variability is discussed. The inadequacy of traditional monitoring approaches and the need to replace such sampling strategies with a combination of observational and process-oriented, in situ rate measurements to quantify the causes and effects of plankton variability are pointed out. [ABSTRACT FROM PUBLISHER]

Observations of Secchi-disk depth and related parameters were made weekly, from 1972 through 1996, in lower Narragansett Bay, Rhode Island. A significant increase in Secchi depth, at a linearized rate of 0.05 m yr−1, was detected during this 25-year time series. Most of the increase in water clarity occurred between 1984 and 1994, when loading of total suspended solids (TSS) to the Bay via waste-water treatment plants decreased ca. 75%, and Secchi depths increased ca. 25%. Decreased annual TSS loading explained 43% of the variance in mean annual Secchi depth between 1983 and 1995. In addition to a long-term increase, there was also a strong seasonal pattern in water clarity. The rate of increase in Secchi depth in Narragansett Bay between 1972 and 1996 was similar to rates observed in other coastal waters that have had recent reductions in anthropogenic TSS loading. [ABSTRACT FROM PUBLISHER]

DCMU-enhanced fluorescence and extracted chlorophyll a were simultaneously measured in Narragansett Bay, Rhode Island and the MERL (Marine Ecosystems Research Laboratory) mesocosms during the 1985 brown tide bloom. Marked differences in the relationship between these variables were observed as the phytoplankton community shifted from dominance by picoalgae to diatoms. The fluorescence to chlorophyll a ratio was significantly (P < 0.05) higher in the mesocosms and the bay when the brown tide species (Aureoeoccus anophagefferens Hargraves et Sieburth) dominated the phytoplankton community compared with other taxa. Although several factors could have affected the relationship we believe the high ratios are related to the pigment composition and/or small size of the brown tide organism. [ABSTRACT FROM AUTHOR]

The brown tide picoalga Aurecoccus anophagefferens Hargraves et Sieburth was present in approximately equal numbers in 12 large sale (13,000 L) mesocosms at the start of a nutrient addition experiment in June 1985. Increases in abundance in untreated systems mimicked the pattern of bloom development in Narragansett Bay, Rhode Island, the seawater source for the experiment in June 1985. Increases in abundance in untreated systems mimicked the pattern of bloom development in Narragansett Bay, Rhode Island, the seawater source for the experiment. Aureococcus increased to maximal values of 2.6 × 10[sup9] cells · L[sup-1] and persisted at high numbers (> 10[sup8] cells·L[SUP-1]) for 7-8 weeks> In nutrient addition tanks, the picoalgae bloomed briefly (1-3 weeks) buts rapidly declined to the usual level (∼10[sup2] cells·L[SUP-1] for eukaryotic alage in Narragansett Bay. The decline in picoalgae in all nutrient treated followed by an increase in total diatoms in all nutrient treated tanks. Mean picoalgae abundance in the mesocosms and the bay was significantly (P < 0.05) and inversely correlated (r = -0.93) with mean concentration of dissolved inorganic nitrogen. The persistence of the brown tide species in control mesocosms nad Narragansett Bay appears related to its ability to grow at very low concentrations of dissolved inorganic nitrogen, Levels previously shown to limits diatom growth [ABSTRACT FROM AUTHOR]

Clones of Skeletonema costatum (Grev). Cl. isolated from Narragansett Bay. R. I., during different seasons were grouped according to their electrophoretic banding patterns. The growth rates, pg chlorophyll cell[sup-1], carbon uptake cell[sup-1]h[sup-1], and carbon uptake pg chl[sup-1] h[sup-1] were measured at 20°C. in a 14;10 h L:D cycle at 180 μE m[sup-2] s[sup-1]. Statistically significant sources of variation were found among groups of clones in growth rate, pg chl cell[sup-1], and carbon uptake pg chl[sup-1] h[sup-1]. It was concluded that there is a significant relationship between the physiological characteristics of clones isolated from populations in different seasons and patterns of genetic variation inferred from the electrophoretic studies. However, genetic diversity detected by bonding patterns trends in underestimate the total genetic diversity in natural populations. The groups of clones most common in summer bloom populations had significantly higher growth rates, lower values of pg chl cell[sup-1] and higher rates of carbon uptaks pg chl[sup-1] h[sup-1] at 20°C than did the group of clones most common in winter bloom populations. However, differences among groups in these parameters at 20°C alone cannot account for the seasonal cycling of genetically variable populations of Skeletonema in Narragnasell Bay. The range of growth rates among clones of this species is 0.1-5.0 diversions d[sup-1] under a single set of temperature and light conditions. Chlorophyll concentrations range from 0.2-1.7 pg chl. Cell[sup-1] and carbon uptake pg chl[sup-1] h[sup-1] varies by a factor of 7 among clones. The range of phystological variations in this species means that it is difficult to use laboratory studies of single clones to analyze the responses of natural populations of Skeletonema. [ABSTRACT FROM AUTHOR]

The water level forecasting system represented by the hydrodynamic model relies too much on the input data and the forecast value of the boundary, therefore introducing uncertainty in the prediction results. Tide tables ignore the effect of the residual water level, which is usually significant. Therefore, to solve this problem, a water level forecasting method for the regional short-term (3 h) is proposed in this study. First, a simplified MIKE21 flow model (FM) was established to construct the regional major astronomical tides after subdividing the model residuals into stationary constituents (surplus astronomical tides, simulation deviation) and nonstationary constituents (residual water level). Harmonic analysis (HA) and long short-term memory (LSTM) were adopted to forecast these model residuals, respectively. Finally, according to different spatial background information, the prediction for each composition was corrected by the inverse distance weighting (IDW) algorithm and its improved IDW interpolation algorithm based on signal energy and the spatial distance (IDWSE) from adjacent observation stations to nonmeasured locations. The developed method was applied to Narragansett Bay in Rhode Island. Compared with the assimilation model, the root-mean-square error (RMSE) of the proposed method decreased from 12.3 to 5.0 cm, and R2 increased from 0.932 to 0.988. The possibility of adding meteorological features into the LSTM network was further explored as an extension of the prediction of the residual water level. The results show that the accuracy was limited to a moderate level, which is related to the difficulty presented by using only wind features to completely characterize the regional dynamic energy equilibrium process. [ABSTRACT FROM AUTHOR]