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Aim: Insects are one of the least studied taxa, with most species lacking basic ecological and biogeographical information. This problem is particularly acute in the tropics, where low sampling effort hampers accurate estimates of species richness at scale and potentially confounds efforts to identify the drivers of biogeographical gradients. Here, we evaluate the quality of the data on the distribution and diversity of odonate species in the Neotropics, while also examining the influence of sampling completeness on climate–richness relationships using a comprehensive database of odonates. Location: The Neotropics. Taxon: Odonata. Methods: Using 56,535 records collected from 1970 to 2021, we assess whether climate–species richness models vary under different scenarios of survey completeness. Results: Our survey compilation revealed that most Neotropical diversity of Odonata likely remains unknown. Only 1% of the one‐degree cells covering the Neotropics held reliable information on odonate species richness, with particularly severe gaps in the Caribbean, Central America, northeastern Brazil and northern Chile. Temperature, precipitation and potential evapotranspiration exert consistent effects on Odonata richness across the entire Neotropics, regardless the level of survey completeness. Whereas seasonality‐related variables are less important predictors of species richness at the biogeographical scale. Main Conclusions: By highlighting areas where inventories are more reliable and identifying regions that require increased data collection efforts and mobilization, our assessment offers a roadmap for improving the reliability of odonate inventories in the Neotropics. Furthermore, our findings underscore the importance of accounting for varying levels of survey completeness in macroecological models to reveal robust climate–species richness relationships. Simultaneously, they highlight strong climatic predictors of species richness, irrespective of survey effort intensity. These predictors provide a solid foundation for modelling and predicting odonate species richness in the Neotropics. [ABSTRACT FROM AUTHOR]

Aim: Different hypothesis have been proposed to explain differences in species richness among islands. However, few studies have attempted to compare the explanatory power of multiple hypotheses using a large data set. Here, we analyse how different types of predictors (energetic/climatic, environmental heterogeneity, island biogeography and anthropogenic) affect variation in dung beetle species richness on Mediterranean and Macaronesian islands. Location: Mediterranean and Macaronesian islands. Taxon: Dung beetles. Methods: Using a large data set of islands (n = 147), we extracted the species richness of dung beetles on each island using 362 bibliographic reference sources. We performed GLMs to analyse the relationship between the species richness of dung beetles and 11 explanatory variables (temperature, evapotranspiration, aridity, area, maximum elevation, connection to continent during LGM, geological origin, distance from continent, nearest continent, years since first human colonization and human density) representing four types of causal hypotheses. We also included as a covariate the number of published papers studying dung beetles as a surrogate of the survey/study effort carried out in each island. Results: GLMs suggest that the years since first human colonization, the number of published papers and island area were the predictors with a higher explanatory capacity. The volcanic character of the islands and the distance from the mainland had some relevance in the case of Scarabaeinae and Geotrupinae, and maximum elevation appeared relevant in the species richness of Scarabaeinae and Aphodiidae. The anthropogenic and island biogeography hypotheses on the variation in species richness were the ones that have the strongest explanatory capacity, regardless of the inclusion of the surrogate of survey effort as a covariate in the models. Main conclusions: The long history of human movements and agricultural activities has facilitated the colonization of dung beetles and provided trophic resources for their persistence, leading to increased species richness. Thus, the importance of anthropogenic factors in shaping the biodiversity patterns of island biogeography cannot be ignored. These human‐induced influences may play a fundamental role in altering the biogeographic patterns of islands, even overriding the importance of other variables. Consequently, our findings underline the profound impact of historical human actions on islands biodiversity. [ABSTRACT FROM AUTHOR]

This study introduces a novel approach to leverage high‐resolution historical climate data and opportunistically collected historical species occurrence data for detecting adaptive responses to global change. We applied this procedure to the temperature data and the most comprehensive Iberian dataset of dung beetle occurrences as an illustrative example. To understand how populations of different species are responding, we devised a procedure that compares the temporal trend of spatial and temperature variables at the locations and times of all the occurrence data collection (overall trend) with the specific temporal trends among the occurrences of each species. The prevalence of various species responses is linked to life history or taxonomic characteristics, enabling the identification of key factors influencing the propensity to experience different effects from climate change. Our findings suggest that nearly half of the Iberian dung beetle species may be adversely affected by temperature increases, with a geographic shift being the most common response. The results generated through the proposed methodology should be regarded as preliminary information, serving to formulate hypotheses about the diverse responses of species to climate change and aiding in the selection of candidate species capable of coping with challenges posed by changing temperatures. [ABSTRACT FROM AUTHOR]

The Global Biodiversity Information Facility (GBIF) is the largest databank on primary biodiversity data. We examined the completeness and geographical biases for all insect data on GBIF to determine its representativeness. Our results demonstrate that GBIF is far from providing a reliable representation about the global distribution of insects. Despite the growing number of records during the last years, few spatial units are well‐surveyed. At coarse resolutions, 34% of the world terrestrial cells lack data and barely 0.5% have completeness values above 90%. Insects are crucial in many ecological functions, and their alarming decline makes it more pressing to have a representative sample to improve our predictive capacity. However, the dynamic nature of species distributions and the strength of anthropogenic forces call for immediate conservation decisions that cannot wait for the empirical data on the identity and distribution of insects. [ABSTRACT FROM AUTHOR]

Pseudoryzomys simplex (Winge 1887) is a small to medium sized terrestrial oryzomyine rodent (Cricetidae, Sigmodontinae) widely distributed in humid environments of tropical and subtropical lowlands of South America with a marked rainy season. The occurrence of this species in the south-central Pampean region between 4700 and 200 ka cal BP was originally associated with some warm climatic episodes. A later hypothesis points out that P. simplex was a typical element of the Humid Pampa subregion during this period, whose distribution was retracted to the north due to the strong anthropic modifications in the area. To corroborate these hypotheses, the niche of occurrence of P. simplex was calculated to analyse the preferred climatic conditions of contemporaneous and fossil record of the species since 4700 ka cal BP. The derived climatic niche of P. simplex shows a marked preference for areas with seasonality precipitation patterns and tropical/subtropical conditions. Geographical estimations and climatic niches derived revealed a moderate overlapping between contemporaneous and Pampean late-Holocene projection, which in no case includes the localities where fossil data were found. Although a better comprehension of the ecological requirements of the species is necessary to discard a shift in its realized climatic niche, it is probable that P. simplex is able to maintain stable populations under similar conditions to the ones represented by fossil occurrences. The distribution of the species in the Humid Pampa subregion is probably affected by non-climatic factors today which are reducing its contemporaneous realized climatic niche and distorting the derived climatic niches obtained. These results support that this species cannot be considered a reliable palaeoclimatic indicator of more Brazilian conditions in the Humid Pampean subregion during the past. [ABSTRACT FROM AUTHOR]

We estimated the potential impact of Global Warming on the species richness of Iberian butterflies. First, we determined the grid size that maximized the balance between geographic resolution, area coverage and environmental representativeness. Contemporary richness was modelled in several alternative ways that differed in how sampling effort was controlled for, and in whether the non-climatic variables (physiography, lithology, position) were incorporated. The results were extrapolated to four WorldClim scenarios. Richness loss is to be expected for at least 70% of the area, with forecasts from the combined models being only slightly more optimistic than those from the purely climatic ones. Overall, the most intense losses are predicted for areas of highest contemporary species richness, while the potential slightly positive or nearly neutral changes would most often concentrate in cells of low to moderate present richness. The environmental determinants of richness might not be uniform across the geographical range of sampling effort, suggesting the need of additional data from the least intensively surveyed areas. Implications for insect conservation: Re-assessing richness and its environmental determinants in the area proves necessary for more detailed forecasts of the climate-driven changes in butterfly species richness. The expected future conditions imply widespread losses of regional richness, even under the less severe scenarios. Since the negative impact of warming is expected to be extensive, long term conservation plans should concentrate in the present protected areas of highest richness as these are most likely to represent the last refuges for mountain species. [ABSTRACT FROM AUTHOR]

Evaluating data quality and inventory completeness must be a preliminary step in any biodiversity research, particularly in the case of insects and high biodiversity areas. Yet, this step is often neglected or, at best, assessed only for one insect group, and the degree of congruence of sampling effort ffor different insect groups remains unexplored.We assess the congruence in the spatial distribution of sampling effort for five insect groups (butterflies, caddisflies, dung beetles, moths, and aquatic beetles) in the Iberian Peninsula. We identify well‐surveyed areas for each taxonomic group and examine the degree to which the patterns of sampling effort can be explained by a set of variables related to environmental conditions and accessibility.Irrespective of the general lack of reliable inventories, we found a general but low congruence in the completeness patterns of the different taxa. This suggests that there is not a common geographical pattern in survey effort and that idiosyncratic and contingent factors (mainly the proximity to the workplaces of entomologists) are differentially affecting each group.After many decades of taxonomic and faunistic work, distributional databases of Iberian insects are still in a very preliminary stage, thus limiting our capacity to obtain reliable answers to basic and applied questions.We recommend carrying out long‐term, standardised and well‐designed entomological surveys able to generate a reliable image of the distribution of different insect groups. This will allow us to estimate accurately insect trends and better understand the full extent of global biodiversity loss. [ABSTRACT FROM AUTHOR]

Coping with aridity is a physiological challenge for all organisms, including freshwater ones. Aridity shapes distributions of aquatic species at fine and large geographical scales. Specifically, for aquatic beetles, the desiccation resistance of the adults is a potential constraint for the colonisation of arid regions.We assessed the congruence between the fundamental and realised aridity niche in eight species of a Palearctic lineage of water beetles (subgenus Lumetus, genus Enochrus, family Hydrophilidae). We also estimated the relative explanatory capacity of aridity‐related versus other environmental variables in species distributions.Most of the species, even those most sensitive to desiccation stress in laboratory experiments, occur in areas with high aridity within the Palearctic region. Our results suggest a lack of association between the physiological (desiccation resistance) and environmental distance matrix (realised aridity niche), or between either of these and phylogenetic distances. Aridity‐related variables had generally a similar explanatory capacity in explaining the distribution of species than non‐related ones.Our results indicate that desiccation resistance has not been an important physiological constraint for the colonisation of arid environments by this clade and suggest that other non‐physiological factors are more important in shaping their distributions along aridity gradients. The studied beetle lineage might conserve a high basal desiccation resistance from relatively recent terrestrial ancestors, which could have provided a physiological advantage for the colonisation of arid areas. Further research could shed light on whether these unexpected results are common to other groups of aquatic insects living in arid areas or are particular to this group of beetles. [ABSTRACT FROM AUTHOR]

Species distribution models (SDMs) are subject to many sources of uncertainty, limiting their application in research and practice. One of their main limitations is the quality of the distributional data used to calibrate them, which directly influences the accuracy of model predictions. We propose a standardized methodology to create maps, describing the limitations of occurrence data for covering the distribution of a species. We develop a set of tools based on the general framework of Maps of Biogeographical Ignorance to describe the main sources of data‐driven uncertainty: taxonomic stability, environmental similarity, geographical proximity and temporal decay of the underlying biodiversity data. The so‐derived indicators of data‐driven uncertainty account for inventory completeness, taxonomic quality, time since the surveys and geographical (and environmental) distance to localities with information. These indicators form the basis of ignorance maps, which can be used to visualize the reliability of SDM projections in geographical space, to estimate the uncertainty of these predictions and to identify target survey areas. To demonstrate the application of our approach, we use data on fourteen Iberian species of Scarabaeidae dung beetles. Data‐driven uncertainty is widespread even for this well‐surveyed group; more than 60% of the region has distributional uncertainty values higher than 0.6, and 30% higher than 0.7. Ignorance maps can be jointly evaluated with SDM predictions to generate spatially explicit maps of uncertainty, identifying where predictions are reliable/unreliable. Neglecting such uncertainty can severely affect SDM effectiveness, as it can introduce biases and inaccuracies into the measured species–environment relationships. These errors could result in incorrect theoretical or practical applications, including ill‐advised conservation actions. We therefore advocate for the routine use of ignorance maps or similar techniques as supporting information in SDM applications. [ABSTRACT FROM AUTHOR]

Aim: Adequate responses of species to climate changes require that thermal changes remain compatible across different key biological aspects (e.g. reproduction, feeding and development). However, limits of thermal compatibility to such biological aspects are largely unknown in extant ectotherm groups. To fill this gap, we studied the in-traspecific congruence of thermal responses across biological aspects. Location: Iberian Peninsula. Taxon: Scarabaeidae Dung beetles. Methods: We studied the role of temperature in determining the diel, seasonal and geographical occurrences of 16 dung beetle species. We fitted polynomial GLMs of the abundance/occurrence of each species as a function of temperature and alternative predictors for each spatiotemporal scale, using deviance partitioning to explore the relative contribution of temperature. We used the fitted models to estimate realized thermal niche attributes at these three spatiotemporal scales, and assessed their intraspecific congruence through the correlation of niche attributes from different scales. Results: We found that temperature has relatively low--but not negligible--explanatory capacity at the three spatiotemporal scales, once alternative predictors are taken into account. More importantly, the estimated thermal responses were largely incongruent across scales, indicating that these species have multidimensional thermal niches. Main conclusions: The multidimensionality of thermal niches entails that species' adjustments to fulfil temperature requirements for one biological aspect (such as seasonal ontogenetic cycles) may result in detrimental effects on other elements (e.g. diel activity). These trade-offs could expose individuals to inadequate temperatures at certain moments, reducing populations' performance. Paradoxically, the weak effects of temperature we found may have severe consequences for species responses to warming if temperature regulates essential aspects of their biology in divergent ways. [ABSTRACT FROM AUTHOR]

The description of how biological information is compiled over time is essential to detect temporal biases in biodiversity data that could directly influence the utility, comparability, and reliability of ecological and biogeographical studies.We explore trends in species recording over time using one of the most spatially and temporally comprehensive country‐level databases for any group of insects in the world – the database of butterfly occurrences from Great Britain.Firstly, we used two crucial milestones (the year in which the taxonomic inventory is complete, i.e., when the last species was recorded, the year in which all species are recorded together for the first time) to delimit three main phases in the process of biodiversity recording (taxonomic, faunistic and exhaustive phases). Secondly, we aimed to quantify how far species features (attractiveness and detectability) influence the process of recording through time.During the first stage of biodiversity compilation, when the main aim is to complete the taxonomic inventory (taxonomic period), entomologists tend to record attractive species more frequently. However, once the inventory is complete, particularly in the period during which more spatially and temporally comprehensive information about species distribution is amassed (the exhaustive period), the recording pattern clearly changes to more detectable species.Common, highly detectable species are undersampled in the first phase of biodiversity data compilation and oversampled in the final stages. Awareness of such temporal patterns in recording is necessary in order to correctly interpret and address bias in insect biodiversity trends. [ABSTRACT FROM AUTHOR]

Summary: Protected areas (PAs) are intended to preserve natural places, aiming to sustain ecosystem functionality and preserve biodiversity. However, PAs are spatially static, while major threats to biodiversity, such as climate and land-use change, are dynamic. The climatic conditions represented in a PA could vanish in the future and appear in other places more or less far away from the PA; these places could be considered as recipient areas potentially suited to receive propagules from the source PAs, which tend to lose the climatic conditions that motivated their protection. This study estimates the current and future climatic representativeness of mainland Iberian national parks by identifying future areas with a similar climate to those existing now in the parks and taking into account the degree of anthropogenic alteration and protection. We identify a network of ecological corridors connecting Iberian national parks with their recipient areas, as well as discriminating those most conflicting areas that impede network connectivity due to their degree of land-use transformation. Our results identify important areas for maintaining the climatic representativeness of Iberian national parks in the future, showing a substantial reduction in the climatic representativeness of the Iberian national parks. Although most of the recipient areas now have forest and semi-natural land uses and more than half of their whole area has protected status, current land uses in the Iberian Peninsula severely obstruct the corridor network connecting the parks and recipient areas. [ABSTRACT FROM AUTHOR]

The seasonal and diel variations of dung beetle species were studied in an Iberian mid- mountain locality to examine the interaction between these two temporal rhythms. We assume that a seasonal variation in the diel activity would support the notion that both rhythms may assist in achieving a quick and flexible response when the climatic conditions change. Data coming from 4,104 pitfall traps placed during 15 sampling periods and totalling 30 daily sampling cycles were analysed using circular statistics and General Linear Models. A wide variety of seasonal patterns are observed, highlighting those species with a clear unimodal or spring-autumn bimodal seasonal pattern. However, a midday diel pattern is the norm in most of the species, except in the case of those exhibiting a high body weight that prefer dusk or night periods. We hypothesize that most of the dung beetle species fly at noon to promote the passive heating of their muscle activity and minimize the metabolic energy expenditure. Results only partially support the seasonal variation in diel activity. Diel preferences are mainly manifested at the time of the year in which the abundance is greater. Approximately two-thirds of the considered species exhibit a similar diel activity along their seasonal active period. As consequence, a significant portion of the dung beetle species currently inhabiting Mediterranean mid-mountains are not able to use the daily variation in climatic conditions to limit the inconveniences of climate change. [ABSTRACT FROM AUTHOR]

Studying the environmental characteristics of the localities in which different taxa have been observed could help to estimate probable niche differences. Previous studies on local distribution and reproductive behavior of the two subspecies of Canthon rutilans support their allopatry. Here we estimated the geographical distribution of these taxa to examine the congruency between the environmental characteristics of the occurrence localities derived from geographical and local data, in order to facilitate the future study of the causal factors that are more likely to explain their segregation. To do so, a database including most of the available distributional information about these subspecies was compiled. The data derived from 23 environmental variables in the occurrence cells were used to estimate those variables with different mean values among the two subspecies, and also to generate distributional maps reflecting the probable distribution of the two subspecies. Ten variables have statistically significant different values among both subspecies. Canthon rutilans rutilans would be present in colder places, living in the high elevation localities of the Atlantic Forest or Pampas biomes, whereas C. rutilans cyanescens seems to be restricted to lowland forested areas. Probable distribution maps show geographical sympatry in almost half of the distribution range of C. r. rutilans. As former results suggest that they are in allopatry at a local scale, these results propose that fine‐grain environmental factors would be promoting the segregation of taxa, but also that coarse‐grain data should be used with caution when the aim is to estimate niche differences. [ABSTRACT FROM AUTHOR]

1. Global warming may especially affect ectothermic insect species, making it necessary to forecast the capacity of these species to cope with climatic changes. 2. In this study, we use circular statistics to examine the seasonal plasticity of 32 dung beetle species in 17 localities of a mountain Iberian assemblage. We assume that the high variability between localities in the seasonal patterns for the same species suggests that seasonal plasticity could minimise the demographic effects of climate change on local populations. 3. Our results suggest that the populations of at least one‐third of the dung beetle species could partially adapt to the effects of climate change by modifying their phenological occurrence, and that the degree of concentration of the seasonal occurrences is generally maintained independently of the locality. However, we have not detected clear seasonal pattern variations or a clear effect of environmental temperature on seasonal variations in around two‐thirds of the studied species. 4. The dung beetle assemblages of this mountain region will experience deep changes in the future. Plasticity in seasonal patterns does not seem to be associated with species characteristics such as high‐rank taxonomic identity, body weight, or geographical distribution. Only the general functional character of species would have some explanatory power. Endophagic Aphodiidae dung beetle species would be more capable than hypophagic species in mitigating the effects of climate change by modifying their phenological traits, whereas that Scarabaeidae hypophagic species may cope better with these climatic changes without having to change their seasonal activities. [ABSTRACT FROM AUTHOR]

Much recent scientific, media and public attention has focussed on the evidence for and consequences of declines in insect biodiversity. Reliable, complete inventories can be used to estimate insect trends accurately, but incomplete data may distort assessments of biodiversity change. Thus, it is essential to understand the completeness of insect inventories. Assessing the database of Great Britain butterfly occurrences, likely the most complete database for any group of insects in the world (with 10,046,366 records for 58 butterfly species), we found that only 62% of the cells have complete inventories at the finest scale evaluated. The dynamic nature of butterfly distributions in response to climate change could explain this result, as the distribution of completeness values is related to the increasing occurrence of some species at higher latitudes as a consequence of recent range expansions. The exceptional quantity of information collected in Great Britain about this appealing group of insects is insufficient to provide a complete picture. Consequently, we cannot expect to build complete inventories for less popular taxa, especially in less comprehensively sampled countries, and will require other techniques to understand the full extent of global biodiversity loss. [ABSTRACT FROM AUTHOR]

The aim of the present study was to predict future changes in biodiversity attributes (richness, rarity, heterogeneity, evenness, functional diversity and taxonomic diversity) of freshwater fish species in river basins around the world, under different climate scenarios. To do this, we use a new methodological approach implemented within the ModestR software (NOO3D) which allows estimating simple species distribution predictions for future climatic scenarios. Data from 16,825 freshwater fish species were used, representing a total of 1,464,232 occurrence records. WorldClim 1.4 variables representing average climate variables for the 1960-1990 period, together with elevation measurements, were used as predictors in these distribution models, as well as in the selection of the most important variables that account for species distribution changes in two scenarios (Representative Concentration Pathways 4.5 and 6.0). The predictions produced suggest the extinction of almost half of current freshwater fish species in the coming decades, with a pronounced decline in tropical regions and a greater extinction likelihood for species with smaller body size and/or limited geographical ranges. [ABSTRACT FROM AUTHOR]

Aim: Local suitability estimated with species distribution models (SDMs) could indicate the maximum abundance attainable by species. Often the abundance–suitability relationship is wedge‐shaped because species do not reach their maximum potential in every suitable location. We explore how SDM performance, the amount of information lost when converting continuous abundance into presence–absence data and species prevalence influence the abundance–suitability relationship. Location: Undefined. Time period: Undefined. Major taxa: Virtual species. Methods: Different abundance scenarios were simulated and converted into presence–absence maps. SDMs were parameterized using simulated predictors with different explanatory capacities. Quantile regressions were performed to characterize the abundance–suitability relationship. The strength of the wedge‐shaped pattern was estimated using the difference in slopes between the 90th and 50th quantile lines, the goodness‐of‐fit of the 90th quantile regressions was calculated, and variation of both parameters was analysed as a function of SDM performance, prevalence and maximum abundance. Results: The degree of wedge shape was directly related to maximum abundance. It also depended on SDM quality; the higher the discrimination capacity, the less wedge‐shaped the abundance–suitability relationship and higher the goodness‐of‐fit of the 90th quantile regressions. Prevalence exerted a significant effect on the shape of the relationship by influencing—together with maximum abundance—the extent of information loss. Main conclusions: SDMs cannot predict actual abundance even when the true determinants of abundance are included as predictors. Because presence–absence and abundance data are related but are different variables, wedge‐shaped patterns are unavoidable. Discrimination capacity and prevalence affect the strength of the wedge‐shaped pattern, so understanding their effects is necessary before any biological explanation is provided for the abundance–suitability relationship. Suitability maps derived from SDMs may transmit a false sense of precision at a local scale and should not be used as a perfect surrogate when abundance information is required. [ABSTRACT FROM AUTHOR]

The establishment of cattle ranches throughout the world has prompted the release of dung beetles as biological control agents that reduce pasture fouling and control dung‐breeding flies. One of these beetles, Digitonthophagus gazella (Fabricius) (Coleoptera: Scarabaeidae), that is native to southeast Africa, has been introduced into the Americas, Australia, and New Zealand. Distribution records for this species have been used to develop climate models of potential future establishment. Recent studies, however, identify D. gazella as a complex of seven species. Taking into account this revision, and the clear identification of the records belonging to the actual D. gazella, we developed environmental models to identify factors that have contributed to the establishment of this species across regions and habitats. We compared the environmental conditions of D. gazella in its native range against those in the regions where the species has or has not established. Our results indicate that D. gazella is still absent in certain parts of Central and South America and parts of Africa where it could potentially establish. We speculate that its distribution in Africa is limited by competitive exclusion. The introduction of D. gazella in America is relatively recent, such that the full extent of its distribution has probably yet to be realized. In Australia and North America, D. gazella is present in regions not predicted according to its native environmental conditions. This discrepancy may reflect a lack of competitive exclusion, phenotypic plasticity, and/or genetic adaptation. Our analyses suggest that the species has the ability to adapt to a wide range of environmental conditions that are extremely different from those in their native region. The species represents a useful case study to indicate that an introduced species may expand its realized niche beyond what is expected based on apparent environmental limits in the species native range. [ABSTRACT FROM AUTHOR]

A terrestrial test system to investigate the biomagnification potential and tissue-specific distribution of ivermectin, a widely used parasiticide, in the non-target dung beetle Thorectes lusitanicus (Jekel) was developed and validated. Biomagnification kinetics of ivermectin in T. lusitanicus was investigated by following uptake, elimination, and distribution of the compound in dung beetles feeding on contaminated faeces. Results showed that ivermectin was biomagnified in adults of T. lusitanicus when exposed to non-lethal doses via food uptake. Ivermectin was quickly transferred from the gut to the haemolymph, generating a biomagnification factor (BMFk) three times higher in the haemolymph than in the gut after an uptake period of 12 days. The fat body appeared to exert a major role on the biomagnification of ivermectin in the insect body, showing a BMFk 1.6 times higher than in the haemolymph. The results of this study highlight that the biomagnification of ivermectin should be investigated from a global dung-based food web perspective and that the use of these antiparasitic substances should be monitored and controlled on a precautionary basis. Thus, we suggest that an additional effort be made in the development of standardised regulatory recommendations to guide biomagnification studies in terrestrial organisms, but also that it is necessary to adapt existing methods to assess the effects of such veterinary medical products. [ABSTRACT FROM AUTHOR]

Estimating the realized and potential distribution of species has become a very active field of research with capacity to propose likely speciation mechanisms. Here, environmental variables and point locality data derived from several sources were used to examine the concordance between geographical distributions and environmental niches derived from occurrences for eleven species of the genus Uromastyx (Reptilia, Agamidae). Our results indicate that the degree of geographical overlap is definitively and statistically lower than the degree of environmental similarity. This reinforces the hypothesis that speciation process within the genus Uromastyx will be mainly based on geographical isolation. However, the environmental divergence among some groups of species cannot be excluded; high environmental distances can be obtained for some related species and the environmental gradient represented by two unique climatic variables allows discriminating some species among which an ecological or environmental segregation would be a plausible explanation. [ABSTRACT FROM AUTHOR]

1. Greenhouse gas (GHG) emissions from livestock contribute significantly to global warming, and a reduction of this source of emissions is crucial in achieving the goal of mitigating global warming. 2. CO2 and CH4 emissions from dung pats were analysed by means of a mesocosm experiment in a Mediterranean ecosystem. The experiment consisted of a total of 30 mesocosms distributed across three treatments: a well‐preserved, undisturbed dung beetle assemblage associated with organic livestock; a dung beetle assemblage that was impoverished as a result of the long‐term use of veterinary medical products; and a control treatment without dung beetles. 3. Corrections related to insect respiration allow researchers to provide more precise measurements of CO2 emissions from dung, especially in the initial and final phases of dung exposure, when the percentage of CO2 emitted by dung beetles can become greater than the emissions from the dung pats themselves. 4. The effects of dung beetles on CO2 and CH4 emissions are much more accentuated in warm‐temperate conditions than in northern temperate areas previously studied. Mediterranean assemblages remove and spread dung faster and more effectively than do northern dung beetle assemblages characterised by a lower functional richness and beetle abundance and biomass. 5. From a livestock management viewpoint, mesocosms representing areas with impoverished dung beetle assemblages, due to the long‐term use of veterinary medical products, such as ivermectin, emitted 1.6‐ and 2.8‐fold higher total CO2 and CH4, respectively, than mesocosms mimicking sites with untreated livestock. [ABSTRACT FROM AUTHOR]

Background: The exoskeleton of an insect could be an important factor in the success of its evolutionary process. This reaches its maximum expression in beetles, which constitute the most diversified animal taxon. The involvement in the management of environmental radiation could be one of the most important functions of the exoskeleton due to the passive contributions to the thermoregulation of body temperature. We study whether the elytra of two sympatric and closely related beetle species respond differentially to the radiation of distinct wavelengths in agreement with their ecological preferences. Methods: Onthophagus coenobita (Herbst) and O. medius (Kugelaan) occupy different habitats and environmental conditions (shaded vs. unshaded from solar radiation). The potential adaptive variations to thermoregulation under these different ecological conditions were studied using the responses of their exoskeletons to radiation of different wavelengths (ultraviolet, visible and near-infrared). For these two species, the amounts of the three wavelengths that were reflected, transmitted or absorbed by the exoskeleton were measured using of a spectrophotometer. In addition, the darkness and thickness of the elytra were examined to determine whether these two features influence the management of radiation by the exoskeleton. Results: Both species differ in the management of visible and near-infrared radiation. In agreement with habitat preferences, the species inhabiting shaded conditions would allow infrared and visible radiation to penetrate the elytra more easily to heat internal body parts, while the elytra of the heliophilous species would have increased absorbance of these same types of radiation. An increase in body size (and therefore in elytron thickness) and the quantity of dark spots may serve as barriers against exogenous heat gain. However, the maintenance of between-species differences independent of the effects of these two morphological features led us to suspect that an unconsidered elytron characteristic may also be affecting these differences. Discussion: The results of the involvement of the exoskeleton thickness and spots in the thermoregulation of insects opens new research lines to obtain a better understanding of the function of the exoskeleton as a passive thermoregulation mechanism in Coleoptera. [ABSTRACT FROM AUTHOR]

Historical gaps and biases in the literature may have influenced the current knowledge of the impacts of invaders on global biodiversity. We performed a systematic review and compiled the main gaps and biases in the literature and the reported negative, neutral and positive effects of exotic species on local invertebrates worldwide. We analysed the relation of these reported effects to the biogeographical origin of the exotic species, the environmental characteristics of the invaded area, the trophic level of the exotic species and of the invaded local fauna, and the elapsed time after first introduction. We analysed 1276 publications comprising 2984 study cases. From these, 1786 cases included "control" situations (without exotics) and provided quantitative supporting evidence of the effects of exotic species on local invertebrates. The main gaps in the literature included tropical and arid climates, estuaries and marine ecosystems, as well as exotic species coming from Neotropical, Australian, Oriental, Ethiopian and Antarctic regions. Carnivorous and herbivorous species were underreported as exotic species and as impacted invertebrates. The considered variables were mostly unrelated to the reported effects, suggesting that the effects of exotic species on local invertebrates are heterogeneous and not unidirectional. Many impacted invertebrates were assemblages of undefined composition in terms of the native or exotic nature of the invaded organisms. Further avenues to reduce the identified biases in the current knowledge about the effects of exotic species on local invertebrates are also indicated. [ABSTRACT FROM AUTHOR]

Species distribution models (SDMs) are broadly used to predict species distributions from available presence data. However, SDMs results have been criticized for several reasons mainly related to two basic characteristics of most SDMs: 1) general lack of reliable species absence information, 2) the frequent use of an arbitrary geographical extent (GE) or accessible area of the species. These impediments have motivated us to generate a procedure called niche of occurrence (NOO). NOO provides the probable distribution of species (realized niche) relying solely on partial information about presence of species. It operates within a natural geographical extent delimited by available observations and avoids using misleading thresholds to obtain binary presence–absence estimations when the species prevalence is unknown. In this study the main characteristics of NOO are presented, comparing its performance with other recognized and more complex SDMs by using virtual species to avoid the omnipresent error sources of real data sets. [ABSTRACT FROM AUTHOR]

The interaction between land use and climate change is expected to strongly affect species distributions along high elevation landscapes. We aimed to test the effect of climatic variables on community metrics among five types of land use in a high elevation landscape. We described dung beetle spatial and temporal taxonomic and functional diversity patterns, and partitioned β‐diversity into turnover and nestedness components. The interaction between land use and daily period of activity mostly drives abundance, functional richness and functional diversity, but not dung beetle species richness. Unlike Neotropical lowlands, species richness and abundance in open environments are similar to those existing in forests. Temperature is an important predictor of abundance and functional divergence. There is a higher spatial component of the taxonomic β‐diversity, which is highly driven by species turnover. The temporal component of the taxonomic β‐diversity was strongly driven by nestedness, where night assemblages are sub‐sets, although not entirely, of diurnal assemblages. For functional diversity, the temporal β‐diversity was much higher than the spatial β‐diversity, but both were similarly represented by functional group turnover and nestedness. The composition of nocturnal and diurnal assemblages is clearly different, even more than the differences observed between habitats. However, taxonomic turnover is the dominant force between sampling sites while nestedness dominates the daily pattern. This means that forest habitats are unlikely to act as shelters for grassland species under a scenario of rising temperature. [ABSTRACT FROM AUTHOR]

Basic characteristics of species assemblages are frequently related to temperature variables recorded at a coarse‐grained scale. In this study, 15 min instant‐measurements of environmental and soil temperatures were recorded during 1 year in six Atlantic Forest sites of southern Brazil, ranging from 250 to 1,630 m a.s.l. These measurements were used to examine the comparative explanatory capacity of several temperature variables in predicting species richness and total or specific variations of dung beetle abundance. The results suggest that temperature measurements obtained during the survey period have the highest explanatory capacity. Furthermore, average temperature values seem to have a relatively higher explanatory capacity than absolute minimum or maximum values reflecting extreme conditions. In general, there is no rule in selecting a temperature variable when the objective involves explaining the variation in species abundances. Both soil and air variables can have similar explanatory capacities. The present results should be considered when designing future ecological studies in Neotropical conditions. Temperature measurements obtained during the survey period seem to provide valuable information to explain the richness and abundance of dung beetles. Both soil and air variables can have similar explanatory capacities. [ABSTRACT FROM AUTHOR]

Knowing how recent environmental changes may have affected species diversity is a major objective to estimate the consequences of habitat alteration and climate change. In this study two dung beetle inventories made in the same locality of the Sierra de Guadarrama (Madrid, Spain) 34 years apart (1983-2017) are compared. Changes in diversity, species richness, abundances and composition were analysed and species replacements described considering the three main functional dung beetle groups: large paracoprids, small paracoprids and small endocoprids. In addition, changes in vegetation cover and climate between the two periods were also analysed to examine their association with the detected faunistic changes. Both the vegetation and climatic data show that the surveyed locality would have experienced an increase in the area covered by bushes and forest and an increase in temperature and warm conditions during the 34 years. These changes are associated with a probable increase in species richness and species dominance, a decrease in diversity and an important change in composition that would have positively affected small paracoprids but negatively affected large paracoprids. [ABSTRACT FROM AUTHOR]

The aim was to discriminate the countries with relatively comprehensive inventories of freshwater fishes from those with insufficiently prospected inventories. We used a data set of 16,734 freshwater fish species with a total of 1,373,449 occurrence records. Accumulation curves relating the increase in the number of species to the number of records, and completeness values obtained after extrapolating these curves to estimate the total number of predicted species were calculated for each country using the RWizard application KnowBR. Using the final slope values of the accumulation curves, the obtained completeness values, and the ratio between the number of records and the observed species, maps and plots representing the location of good, fair and poor quality inventories at country level were obtained. Inventory completeness ranged from 5.3% (Guinea-Bissau) to 108.4% (United Kingdom), with a pooled mean of 65.9%. We observed that a completeness higher than 90%, a slope lower than 0.02 and a ratio of records/species observed greater than 15 were good thresholds for identifying countries with good quality inventories; only 26 countries met these requirements, mainly located in Europe and North America. However, more than 71% of countries worldwide have inventories that can be categorised as of poor quality. Furthermore, even those countries with relatively accurate national inventories possess a high variability in the completeness of their provincial or regional inventories. [ABSTRACT FROM AUTHOR]

Understanding the factors shaping species' distributions is a key longstanding topic in ecology with unresolved issues. The aims were to test whether the relative contribution of abiotic factors that set the geographical range of freshwater fish species may vary spatially and/or may depend on the geographical extent that is being considered. The relative contribution of factors, to discriminate between the conditions prevailing in the area where the species is present and those existing in the considered extent, was estimated with the instability index included in the R package SPEDInstabR. We used 3 different extent sizes: 1) each river basin where the species is present (local); 2) all river basins where the species is present (regional); and 3) the whole Earth (global). We used a data set of 16,543 freshwater fish species with a total of 845,764 geographical records, together with bioclimatic and topographic variables. Factors associated with temperature and altitude show the highest relative contribution to explain the distribution of freshwater fishes at the smaller considered extent. Altitude and a mix of factors associated with temperature and precipitation were more important when using the regional extent. Factors associated with precipitation show the highest contribution when using the global extent. There was also spatial variability in the importance of factors, both between species and within species and from region to region. Factors associated with precipitation show a clear latitudinal trend of decreasing in importance toward the equator. [ABSTRACT FROM AUTHOR]

Dung consumption and removal is a fundamental ecological process carried out by dung beetles that drive soil nutrient cycling and associated ecosystem services. In this study, the removal rate of small droppings by dung beetles was estimated in natural subtropical rainforests of southern Brazil located along an elevational gradient, in order to understand the factors influencing variation in dung removal. To do that, the comparative explanatory capacity of three main types of variables was quantified: assemblage characteristics, local climatic and habitat conditions, and seasonal variation. The complete disappearance of dung within 48 h after deposition occurs in 73% of occasions. The highest explanatory capacity correspond to the combined effects of the three types of variables; however, average air temperature during the sampling period, total volume of dung beetles collected in the traps in which dung removal was measured, and the seasonal transition from summer to winter were the most important and representative predictors of dung removal. Thus, the dung nutrient incorporation into the soil will most likely be greater during spring‐summer conditions, when the air temperature at the time of dung deposition is high and the biomass of the dung beetle assemblage is bigger. The disappearance of small droppings by dung beetle activity within 48 h after deposition is widespread in subtropical Atlantic Rainforests. The highest explanatory capacities accounting for dung removal correspond to the combined effects of three predictors: assemblage characteristics, local environmental conditions, and seasonal effects. Thus, incorporation of dung nutrients into the soil most likely is greatest during spring‐summer conditions, when air temperature at the time of dung deposition is high, and biomass of the dung beetle assemblage is high. [ABSTRACT FROM AUTHOR]

Abstract: Aim: We investigated changes in dung beetle β‐diversity components along a subtropical elevational gradient, to test whether turnover or nestedness‐related processes drive the dissimilarity of assemblages at spatial and temporal scales. Location: An elevational gradient (200–1,600 m a.s.l.) of the Atlantic Forest in southern Brazil. Methods: We investigated the extent to which β‐diversity varied along the elevational gradient (six elevations) at both spatial (among sites at different elevations) and temporal (different months at the same site) scales. We compared both the turnover and nestedness‐related dissimilarity of species and genera using multiple‐site or multiple‐month measures and tested whether these measurements were different from random expectations. Results: A mid‐elevation peak in species richness along the elevational gradient was observed, and the lowest richness occurred at the highest elevations. We found two different groups of species, lowland and highland species, with a mixing of groups at intermediate elevations. The turnover component of β‐diversity was significantly higher for both spatial (i.e. elevational) and temporal changes in species composition. However, when the data for genera by site were considered, the elevational turnover value decreased in relative importance. Nestedness‐related processes are more important for temporal dissimilarity patterns at higher elevation sites. Main conclusions: Spatial and temporal turnover of dung beetle species is the most important component of β‐diversity along the elevational gradient. High‐elevation assemblages are not subsets of assemblages that inhabit lower elevations, but this relationship ceases when β‐diversity is measured at the generic level. Environmental changes across elevations may be the cause of the differential establishment of distinctive species, but these species typically belong to the same higher taxonomic rank. Conservation strategies should consider elevational gradients in case‐specific scenarios as they may contain distinct species assemblages in lowlands vs. highlands. [ABSTRACT FROM AUTHOR]

Abstract: Strategies to deal with global radiation may be related to important aspects of species biology and ecology by reflecting, transmitting or absorbing the radiation of varying wavelengths differently. The elytra capacity to manage infrared, visible and ultraviolet radiations (from 185 to 1400 nm) was assessed with a spectrophotometric analysis in five Canthon species of dung beetles; we calculated the reflectance, transmittance and absorbance capacity of the elytra of these species. These species have different ecologies: two species preferentially inhabit forest areas (Canthon angularis and Canthon lividus lividus), two species preferentially inhabit open areas (Canthon chalybaeus and Canthon tetraodon) including agricultural crops, and one species does not present a clear habitat preference and can be found in both habitats (Canthon quinquemaculatus). All the species show a similar pattern in which the light from shorter wavelengths and higher frequencies is almost entirely absorbed by the elytra, while radiation from longer wavelengths and lower frequencies can mostly pass through the elytra. However, C. quinquemaculatus seems to have significantly higher rates of reflectance and transmittance in the visible‐ and near‐infrared spectrum. This different pattern found in C. quinquemaculatus may be associated with its capacity to establish populations both in agricultural and forest areas. [ABSTRACT FROM AUTHOR]

Abstract: Aim: During its entire history, the Earth has gone through periods of climate change similar in scale and pace to the warming trend observed today in the Anthropocene. The impact of these ancient climatic events on the evolutionary trajectories of organisms provides clues on the organismal response to climate change, including extinction, migration and persistence. Here, we examine the evolutionary response to climate cooling/warming events of the clusioid families Calophyllaceae, Podostemaceae and Hypericaceae (CPH clade) and the genus Hypericum as test cases. Location: Holarctic. Time period: Late Cretaceous–Cenozoic. Major taxa studied: Angiosperms. Methods: We use palaeoclimate simulations, species distribution models and phylogenetic comparative approaches calibrated with fossils. Results: Ancestral CPH lineages could have been distributed in the Holarctic 100 Ma, occupying tropical subhumid assemblages, a finding supported by the fossil record. Expansion to closed‐canopy tropical rain forest habitats occurred after 60 Ma, in the Cenozoic, in agreement with earlier ideas of a post‐Cretaceous origin of current tropical rain forest. Posterior Cooling during the Eocene triggered diversification declines in CPH tropical lineages, and was associated with a climatic shift towards temperate affinities in Hypericum. Hypericum subsequently migrated to tropical mountains, where it encountered different temperate conditions than in the Holarctic. Main conclusions: We hypothesize that most clusioid CPH lineages failed to adapt to temperate regimes during periods of Cenozoic climate change, and went extinct in the Holarctic. In contrast, boreotropical descendants including Hypericum that underwent niche evolution demonstrated selective advantages as climates became colder. Our results point toward macroevolutionary trajectories involving the altering fates of closely related clades that adapt to periods of global climate change versus those that do not. Moreover, they suggest the hypothesis that potentially many clades, particularly inhabitants of boreotropical floras, were likely extirpated from the Holarctic and persist today (if at all) in more southern tropical locations. [ABSTRACT FROM AUTHOR]

Many claims that uplift of the Qinghai‐Tibetan plateau (QTP) drove the divergences of extant high‐elevation biota have recently been challenged. For Mendacibombus bumblebees, high‐elevation specialists with distributions centred on the QTP, we examine broader explanations. We extend integrative biogeography to cover multiple contributing factors by using a framework of sequential filters: 1) molecular evidence from four genes is used to estimate phylogenetic relationships, with time calibration from a published estimate; 2) spatial evidence from current distributions is combined with the phylogeny and constrained by a model of short‐distance dispersal along mountain corridors to estimate ancestral distributions by both S‐DIVA and S‐DEC analysis; 3) geological evidence from the literature is used to constrain when high mountain ranges were uplifted to become potential corridors; and 4) climatological evidence from Mendacibombus niche‐evolution reconstructions and from palaeoclimate simulations is used to constrain when habitat was suitable in key gaps within corridors. Explanations for Mendacibombus distributions can be identified that require only short‐distance dispersal along mountain corridors, commensurate with the limited dispersal ability observed for bumblebees. These explanations depend on the timing of uplift of mountain ranges, regional climate change, and climate‐niche evolution. The uplift of the QTP may have contributed to the initial Oligocene divergence of the common ancestor of Mendacibombus from other bumblebees, but for the first two thirds of the history of Mendacibombus, only a single lineage has present‐day descendants. Divergence of multiple extant Mendacibombus lineages coincided with the Late Miocene–Pliocene uplift of externally connecting mountains, combined with regional climate cooling. These changes provided greater connectivity of suitable habitat, allowing these bumblebees to disperse out of the western QTP via new high bridges, escaping along the mountain corridors of the Tian Shan and Hindu Kush ranges, reaching eventually far to the west (Iberian Peninsula) and to the north‐east (Kamchatka). [ABSTRACT FROM AUTHOR]

Aim Land-use change typically goes hand in hand with the introduction of exotic species, which mingle with indigenous species to form novel assemblages. Here, we compare the functional structure of indigenous and exotic elements of ground-dwelling arthropod assemblages across four land-uses of varying management intensity. Location Terceira Island (Azores, North Atlantic). Methods We used pitfall traps to sample arthropods in 36 sites across the four land-uses and collated traits related to dispersal ability, body size and resource use. For both indigenous and exotic species, we examined the impact of land-uses on trait diversity and tested for the existence of non-random assembly processes using null models. We analysed differences in trait composition among land-uses for both indigenous and exotic species with multivariate analyses. We used point-biserial correlations to identity traits significantly correlated with specific land-uses for each element. Results We recorded 86 indigenous and 116 exotic arthropod species. Under high-intensity land-use, both indigenous and exotic elements showed significant trait clustering. Trait composition strongly shifted across land-uses, with indigenous and exotic species being functionally dissimilar in all land-uses. Large-bodied herbivores dominated exotic elements in low-intensity land-uses, while small-bodied spiders dominated exotic elements in high-intensity land-uses. In contrast, with increasing land-use intensity, indigenous species changed from functionally diverse to being dominated by piercing and cutting herbivores. Main conclusions Our study revealed two main findings: first, in high-intensity land-uses, trait clustering characterized both indigenous and exotic elements; second, exotic species differed in their functional profile from indigenous species in all land-use types. Overall, our results provide new insights into the functional role of exotic species in a land-use context, suggesting that, in agricultural landscape, exotic species may contribute positively to the maintenance of some ecosystem functions. [ABSTRACT FROM AUTHOR]

1. Population differences in physiological responses are examined in Thorectes lusitanicus, an endemic Iberian dung beetle species, by submitting individuals of different populations to the same experimental and acclimation conditions. 2. An infrared thermography protocol was used, consisting of three assays: start of activity, cold response, and heat response. Individuals of 12 populations were studied and the comparative explanatory capacities of several environmental factors in relation to the observed inter-population differences were examined. 3. The heating rate from chill coma to the beginning of activity was the variable with the highest discrimination power among the studied populations, accounting for 94% of the observed variance. Regarding the heat response, only six of the 16 thermal variables reached significance (inter-population differences accounted for 52-74% in these six thermal parameters). 4. From the three considered environmental factors ( Mediterranean climate, land cover, and trophic characteristics) only land cover characteristics remain statistically significant, affecting the cold response of individuals. 5. Thorectes lusitanicus is a species characterised by a high diversity of thermotolerance and recovery traits across populations with a low degree of association with broad environmental factors. Finally, it is suggested that the apterous character of this species could be a determinant factor explaining the high diversity of ecophysiological traits related to thermal stress tolerance and the recovery time. [ABSTRACT FROM AUTHOR]

Exoskeletons of beetles and their associated morphological characteristics can serve many different functions, including thermoregulation. We study the thermal role of the exoskeleton in 13 Geotrupidae dung beetle species using heating experiments under controlled conditions. The main purpose was to measure the influence of heating sources (solar radiance vs. infrared), animal position (dorsal exposure vs. ventral exposure), species identity, and phylogenetic relationships on internal asymptotic temperatures and heating rates. The thermal response was significantly influenced by phylogenetic relatedness, although it was not affected by the apterous condition. The asymptotic internal temperature of specimens was not affected by the thoracic volume but was significantly higher under simulated sunlight conditions than under infrared radiation and when exposed dorsally as opposed to ventrally. There was thus a significant interaction between heating source and body position. Heating rate was negatively and significantly influenced by thoracic volume, and, although insignificantly slower under simulated sunlight, it was significantly affected by body position, being faster under dorsal exposure. The results constitute the first evidence supporting the hypothesis that the beetle exoskeleton acts differentially across the electromagnetic spectrum determining internal body temperatures. This interesting finding suggests the existence of a kind of passive physiology imposed by the exoskeleton and body size, where interspecific relationships play a minor role. [ABSTRACT FROM AUTHOR]

Aim To describe patterns in new species descriptions, examine the spatial distribution and the associated environmental conditions of the localities with newly discovered species, as well as to assess whether protected areas encompass the majority of the occurrences of undescribed species. Location Ibero-Balear region. Methods After an exhaustive literature review, the temporal and spatial patterns of the terrestrial animal species described in the Ibero-Balear region from 1994 to 2012 were mapped. Both linear and asymptotic functions were used to compare the rates of discovered species using Akaike weights. Generalized Linear Models were used to estimate the explanatory capacity of a large set of environmental, land use and distance variables on the presence-absence of newly discovered species and on the variation in the number of new discoveries. Results The average annual description rate was 112 species; 99% of the species descriptions were invertebrates. Adjusted discovery curves suggest that we still have an incomplete animal inventory. Environmental variables possess a limited capacity to predict the characteristics of the localities where new species are discovered (≈ 12%). Main conclusions Our results indicate that it is not possible to provide an advanced estimation of the environmental and land use characteristics of the Ibero-Balear regions in which new species will be discovered in the future. Current protected areas are not guaranteed to conserve these undiscovered species, and non-protected areas should also be considered important reservoirs of unknown biodiversity. [ABSTRACT FROM AUTHOR]

Global data sets are essential in macroecological studies. File formats of the few available data sets of freshwater ecosystems, however, are either incompatible with most macroecological software packages, incomplete, or of coarse spatial resolutions. We integrated more than 460 million geographical coordinates for freshwater habitats in the FRWater data set, partitioned into seven different habitats (lentic, wetlands, reservoirs, small rivers, large rivers, small ditches, large ditches, small channels, large channels, small drains and large drains) in ModestR (http://www.ipez.es/ModestR). A comprehensive collection of geospatial rasters was assembled, one for each of the seven freshwater habitats, with the area in km2occupied by each habitat presented in cells of 5 arc-minute resolution. The utility of FRWater was evaluated using hierarchical partitioning via the identification of the contribution of the seven different freshwater habitats to both species richness and rarity. To this end, we used a data set of 836,123 geographical records of the 16,216 species of freshwater fishes recognized as valid by systematists at the end of 2014. Areas in North America and Europe are the most detailed in the FRWater data set, evidencing the higher quality of data sources in those regions. The number of geographical coordinates is much lower for Africa, Asia, Australia, and South America where many water bodies remain unmapped. In light of the variation in information quality at continental levels, we performed and present comparative analyses for Europe versus South America at local (5ʹ × 5ʹ grid cells) and regional (5° × 5° grid cells) scales. The relative contribution of small rivers to both species richness and rarity was highest under almost all analyses, followed by lentic habitats and large rivers. The areas of different habitats moreover explained a relatively high proportion of the observed variance in geographic rarity. Our findings corroborate previous findings that the greater contribution of small rivers to species richness is probably due to these habitats promoting geographical rarity. Hence, species richness is favored by the isolation resultant from, and the refuges associated with, small river basins and via the diversification processes promoted by such isolation. [ABSTRACT FROM PUBLISHER]

Ecologists and evolutionary biologists are increasingly using big-data approaches to tackle questions at large spatial, taxonomic, and temporal scales. However, despite recent efforts to gather two centuries of biodiversity inventories into comprehensive databases, many crucial research questions remain unanswered. Here, we update the concept of knowledge shortfalls and review the tradeoffs between generality and uncertainty. We present seven key shortfalls of current biodiversity data. Four previously proposed shortfalls pinpoint knowledge gaps for species taxonomy (Linnean), distribution (Wallacean), abundance (Prestonian), and evolutionary patterns (Darwinian). We also redefine the Hutchinsonian shortfall to apply to the abiotic tolerances of species and propose new shortfalls relating to limited knowledge of species traits (Raunkiæran) and biotic interactions (Eltonian). We conclude with a general framework for the combined impacts and consequences of shortfalls of large-scale biodiversity knowledge for evolutionary and ecological research and consider ways of overcoming the seven shortfalls and dealing with the uncertainty they generate. [ABSTRACT FROM AUTHOR]

Aim Quantifying species abundances is costly, especially when many species are involved. To overcome this problem, several studies have predicted local abundances (at the sample unit level) from species occurrence distribution models ( SODMs), with differences in predictive performance among studies. Surprisingly, the ability of SODM to predict regional abundances of an entire area of interest has never been tested, despite the fact that it is an essential parameter for species conservation and management. We tested whether local and regional abundances of 21 terrestrial bird species could be predicted from SODMs in an exhaustively surveyed island, and examined the variation explained by species-specific traits. Location La Palma Island, Canary Islands. Methods We firstly assessed two types of algorithms representing the two main families of SODMs. We built models using presence/absence (boosted classification trees) and presence/background ( Max Ent) data as a function of relevant environmental predictors and tested their ability to predict the observed local abundances. The predicted probabilities of occurrence ( P i) were translated into animal numbers ( n′) using the revisited equation n i ′ = − ln(1−P i ), and we obtained regional abundances (for the whole island). Results Predictive ability of presence/absence models was superior than that of MaxEnt. At the regional level, the observed average densities of all species were highly predictable from occurrence probabilities ( R2 = 93.5%), without overall overestimation or underestimation. Interspecific variation in the accuracy of predicted regional density was largely explained ( R2 = 73%), with habitat breath and variation in local abundance being the traits of greatest importance. Main conclusions Despite uncertainties associated with local predictions and the idiosyncrasies of each species, our procedures enabled us to predict regional abundances in an unbiased way. Our approach provides a cost-effective tool when a large number of species are involved. Furthermore, the influence of species-specific traits on the prediction accuracy provides insights into sampling designs for focal species. [ABSTRACT FROM AUTHOR]

We herein present FactorsR, an RWizard application which provides tools for the identification of the most likely causal factors significantly correlated with species richness, and for depicting on a map the species richness predicted by a Support Vector Machine (SVM) model. As a demonstration of FactorsR, we used an assessment using a database incorporating all species of terrestrial carnivores, a total of 249 species, distributed across 12 families. The model performed with SVM explained 91.9% of the variance observed in the species richness of terrestrial carnivores. Species richness was higher in areas with both higher vegetation index and patch index, i.e., containing higher numbers of species whose range distribution is less fragmented. Lower species richness than expected was observed in Chile, Madagascar, Sumatra, Taiwan, and Sulawesi. [ABSTRACT FROM AUTHOR]

Human-caused disturbances can lead to the extinction of indigenous (endemic and native) species, while facilitating and increasing the colonisation of exotic species; this increase can, in turn, promote the similarity of species compositions between sites if human-disturbed sites are consistently invaded by a regionally species-poor pool of exotic species. In this study, we analysed the extent to which epigean arthropod assemblages of four islands of the Azorean archipelago are characterised by nestedness according to a habitat-altered gradient. The degree of nestedness represents the extent to which less ubiquitous species occur in subsets of sites occupied by the more widespread species, resulting in an ordered loss/gain of species across environmental or ecological gradients. A predictable loss of species across communities while maintaining others may lead to more similar communities (i.e. lower beta-diversity). In contrast, anti-nestedness occurs when different species tend to occupy distinct sites, thus characterising a replacement of species across such gradients. Our results showed that an increase in exotic species does not promote assemblage homogenisation at the habitat level. On the contrary, exotic species were revealed as habitat specialists that constitute new and well-differentiated assemblages, even increasing the species compositional heterogeneity within human-altered landscapes. Therefore, contrary to expectations, our results show that both indigenous and exotic species established idiosyncratic assemblages within habitats and islands. We suggest that both the historical extinction of indigenous species in disturbed habitats and the habitat-specialised character of some exotic invasions have contributed to the construction of current assemblages. [ABSTRACT FROM AUTHOR]

We require representative data of species occurrence to explain plant diversity patterns, but most of the available information is incomplete and biased. To improve our knowledge, we suggest that species inventorying should be an iterative process encompassing the following: (1) the detection of taxonomic and geographical gaps; (2) the planning of a survey design to reduce such gaps; and (3) the evaluation of field sampling results. Here, we focus on the latter phase for the bryophytes of Terceira Island ( Azores) for which we have previously estimated < 1% of the area as well surveyed based on historical collections. To examine the performance of our stratified survey based on two factors (land use and environmental regions), we used rarefaction curves, ANOVA tests and bootstrap sampling. We recorded 40% of all the species known for the island and presented eight new citations. The species assemblages remained similar between historical and current inventories. Most localities had completeness values > 85%, but we always exceeded the optimal sampling effort. Land uses and environmental regions affected species diversity, but, unexpectedly, to a different degree. Our study illustrates the difficulties of planning field surveys to obtain reliable biodiversity patterns, even when prior information and standardized sampling protocols are explicitly considered. © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2015, 177, 491-503. [ABSTRACT FROM AUTHOR]

Unlike other dung beetles, the Iberian geotrupid, Thorectes lusitanicus, exhibits polyphagous behavior; for example, it is able to eat acorns, fungi, fruits, and carrion in addition to the dung of different mammals. This adaptation to digest a wider diet has physiological and developmental advantages and requires key changes in the composition and diversity of the beetle's gut microbiota. In this study, we isolated aerobic, facultative anaerobic, and aerotolerant microbiota amenable to grow in culture from the gut contents of T. lusitanicus and resolved isolate identity to the species level by sequencing 16S rRNA gene fragments. Using BLAST similarity searches and maximum likelihood phylogenetic analyses, we were able to reveal that the analyzed fraction (culturable, aerobic, facultative anaerobic, and aerotolerant) of beetle gut microbiota is dominated by the phyla Proteobacteria, Firmicutes, and Actinobacteria. Among Proteobacteria, members of the order Enterobacteriales (Gammaproteobacteria) were the most abundant. The main functions associated with the bacteria found in the gut of T. lusitanicus would likely include nitrogen fixation, denitrification, detoxification, and diverse defensive roles against pathogens. [ABSTRACT FROM AUTHOR]

Aim To examine the pattern and cumulative curve of descriptions of freshwater fishes world-wide, the geographical biases in the available information on that fauna, the relationship between species richness and geographical rarity of such fishes, as well as to assess the relative contributions of different environmental factors on these variables. Location Global. Methods ModestR was used to summarize the geographical distribution of freshwater fish species using information available from data-based geographical records. The first-order jackknife richness estimator was used to estimate the completeness of such data in all terrestrial 1-degree cells world-wide. An α-shape procedure was used to build range maps capable of providing relatively accurate species richness and geographical rarity values for each grid cell. We also examined the explanatory capacity of a high number of environmental variables using multiple regressions and Support Vector Machine. Results Cumulative species description curves show that a high number of species of freshwater fishes remain to be discovered. Completeness values indicate that only 199 one-degree grid cells, mainly located in eastern North America and Europe, could be considered as having relatively accurate inventories. Range maps provide species richness values that are positively and significantly related to those resulting from the first-order jackknife richness estimator. The relationship between species richness and geographical rarity is triangular, so that these species-rich cells are those with a higher proportion of distributionally rare species. Species richness is predicted by climatic and/or productivity variables but geographical rarity is not. Main conclusions In general, species-rich tropical areas harbour a higher number of narrowly distributed species although comparatively species-poor subtropical cells may also contain narrowly distributed species. Historical factors may help to explain the faunistic composition of these latter areas; a supposition also supported by the low predictive capacity of climatic and productivity variables on geographical rarity values. [ABSTRACT FROM AUTHOR]

Aim To determine whether the method used to build distributional maps from raw data influences the representation of two principal macroecological patterns: the latitudinal gradient in species richness and the latitudinal variation in range sizes ( Rapoport's rule). Location World-wide. Methods All available distribution data from the Global Biodiversity Information Facility ( GBIF) for those fish species that are members of orders of fishes with only marine representatives in each order were extracted and cleaned so as to compare four different procedures: point-to-grid ( GBIF maps), range maps applying an α-shape [ GBIF-extent of occurrence ( EOO) maps], the MaxEnt method of species distribution modelling ( GBIF-MaxEnt maps) and the MaxEnt method but restricted to the area delimited by the α-shape ( GBIF-MaxEnt-restricted maps). Results The location of hotspots and the latitudinal gradient in species richness or range sizes are relatively similar in the four procedures. GBIF-EOO maps and most GBIF-MaxEnt-maps provide overestimations of species richness when compared with those present in a priori well-surveyed cells. GBIF-EOO maps seem to provide more reasonable world macroecological patterns. MaxEnt can erroneously predict the presence of species in environmentally similar cells of another hemisphere or in other regions that lie outside the range of the species. Limiting this overpredictive capacity, as in the case of GBIF-MaxEnt-restricted maps, seems to mimic the frequency of observations derived from a simple point-to-grid procedure, with the utility of this procedure consequently being limited. Main conclusions In studies of macroecological patterns at a global scale, the simple α-shape method seems to be a more parsimonious option for extrapolating species distributions from primary data than are distribution models performed indiscriminately and automatically with MaxEnt. GBIF data may be used in macroecological patterns if original data are cleaned, autocorrelation is corrected and species richness figures do not constitute obvious underestimations. Efforts therefore should focus on improving the number and quality of records that can serve as the source of primary data in macroecological studies. [ABSTRACT FROM AUTHOR]

In disciplines such as macroevolution that are not amenable to experimentation, scientists usually rely on current observations to test hypotheses about historical events, assuming that “the present is the key to the past.” Biogeographers, for example, used this assumption to reconstruct ancestral ranges from the distribution of extant species. Yet, under scenarios of high extinction rates, the biodiversity we observe today might not be representative of the historical diversity and this could result in incorrect biogeographic reconstructions. Here, we introduce a new approach to incorporate into biogeographic inference the temporal, spatial, and environmental information provided by the fossil record, as a direct evidence of the extinct biodiversity fraction. First, inferences of ancestral ranges for those nodes in the phylogeny calibrated with the fossil record are constrained to include the geographic distribution of the fossil. Second, we use fossil distribution and past climate data to reconstruct the climatic preferences and potential distribution of ancestral lineages over time, and use this information to build a biogeographic model that takes into account “ecological connectivity” through time. To show the power of this approach, we reconstruct the biogeographic history of the large angiosperm genus Hypericum, which has a fossil record extending back to the Early Cenozoic. Unlike previous reconstructions based on extant species distributions, our results reveal that Hypericum stem lineages were already distributed in the Holarctic before diversification of its crown-group, and that the geographic distribution of the genus has been relatively stable throughout the climatic oscillations of the Cenozoic. Geographical movement was mediated by the existence of climatic corridors, like Beringia, whereas the equatorial tropical belt acted as a climatic barrier, preventing Hypericum lineages to reach the southern temperate regions. Our study shows that an integrative approach to historical biogeography—that combines sources of evidence as diverse as paleontology, ecology, and phylogenetics—could help us obtain more accurate reconstructions of ancient evolutionary history. It also reveals the confounding effect different rates of extinction across regions have in biogeography, sometimes leading to ancestral areas being erroneously inferred as recent colonization events. [ABSTRACT FROM PUBLISHER]