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* Background Deep roots are a common trait among a wide range of plant species and biomes, and are pivotal to the very existence of ecosystem services such as pedogenesis, groundwater and streamflow regulation, soil carbon sequestration and moisture content in the lower troposphere. Notwithstanding the growing realization of the functional significance of deep roots across disciplines such as soil science, agronomy, hydrology, ecophysiology or climatology, research efforts allocated to the study of deep roots remain incommensurate with those devoted to shallow roots. This is due in part to the fact that, despite technological advances, observing and measuring deep roots remains challenging. * Scope Here, other reasons that explain why there are still so many fundamental unresolved questions related to deep roots are discussed. These include the fact that a number of hypotheses and models that are widely considered as verified and sufficiently robust are only partly supported by data. Evidence has accumulated that deep rooting could be a more widespread and important trait among plants than usually considered based on the share of biomass that it represents. Examples that indicate that plant roots have different structures and play different roles with respect to major biochemical cycles depending on their position within the soil profile are also examined and discussed. * Conclusions Current knowledge gaps are identified and new lines of research for improving our understanding of the processes that drive deep root growth and functioning are proposed. This ultimately leads to a reflection on an alternative paradigm that could be used in the future as a unifying framework to describe and analyse deep rooting. Despite the many hurdles that pave the way to a practical understanding of deep rooting functions, it is anticipated that, in the relatively near future, increased knowledge about the deep rooting traits of a variety of plants and crops will have direct and tangible influence on how we manage natural and cultivated ecosystems. [ABSTRACT FROM AUTHOR]

Fine root dynamics is a main driver of soil carbon stocks, particularly in tropical forests, yet major uncertainties still surround estimates of fine root production and turnover. This lack of knowledge is largely due to the fact that studying root dynamics in situ, particularly deep in the soil, remains highly challenging. We explored the interactions between fine root dynamics, soil depth, and rainfall in mature rubber trees (Hevea brasiliensis Müll. Arg.) exposed to sub-optimal edaphic and climatic conditions. A root observation access well was installed in northern Thailand to monitor root dynamics along a 4.5 m deep soil profile. Image-based measurements of root elongation and lifespan of individual roots were carried out at monthly intervals over 3 years. Soil depth was found to have a significant effect on root turnover. Surprisingly, root turnover increased with soil depth and root half-life was 16, 6-8, and only 4 months at 0.5, 1.0, 2.5, and 3.0 m deep, respectively (with the exception of roots at 4.5 m which had a halflife similar to that found between depths of 1.0 and 2.5 m). Within the first two meters of the soil profile, the highest rates of root emergence occurred about 3 months after the onset of the rainy season, while deeper in the soil, root emergence was not linked to the rainfall pattern. Root emergence was limited during leaf flushing (between March and May), particularly within the first two meters of the profile. Between soil depths of 0.5 and 2.0 m, root mortality appeared independent of variations in root emergence, but below 2.0 m, peaks in root emergence and death were synchronized. Shallow parts of the root system were more responsive to rainfall than their deeper counterparts. Increased root emergence in deep soil toward the onset of the dry season could correspond to a drought acclimation mechanism, with the relative importance of deep water capture increasing once rainfall ceased. The considerable soil depth regularly explored by fine roots, even though significantly less than in surface layers in terms of root length density and biomass, will impact strongly the evaluation of soil carbon stocks. [ABSTRACT FROM AUTHOR]

Background and aims: This paper provides an overview of the measuring capabilities of IJ_Rhizo, an ImageJ macro that measures scanned images of washed root samples. IJ_Rhizo is open-source, platform-independent and offers a simple graphic user interface (GUI) for a main audience of non-programmer scientists. Being open-source based, it is also fully modifiable to accommodate the specific needs of the more computer-literate users. A comparison of IJ_Rhizo’s performance with that of the widely used commercial package WinRHIZO™ is discussed. Methods: We compared IJ_Rhizo’s performance with that of the commercial package WinRHIZO™ using two sets of images, one comprising test-line images, the second consisting of images of root samples collected in the field. IJ_Rhizo and WinRHIZO™ estimates were compared by means of correlation and regression analysis. Results: IJ_Rhizo “Kimura” and WinRHIZO™ “Tennant” were the length estimates that were best linearly correlated with each other. Correlation between average root diameter estimates was weaker, due to the sensitivity of this parameter to thresholding and filtering of image background noise. Conclusions: Overall, IJ_Rhizo offers new opportunities for researchers who cannot afford the cost of commercial software packages to carry out automated measurement of scanned images of root samples, without sacrificing accuracy. [ABSTRACT FROM AUTHOR]

Understanding better the interactions between root systems in associated crops is significant for basic knowledge in plant science and to help designing cropping systems. Current research on inter-specific root interactions concentrates on static descriptions of the horizontal extension of root systems or on the dynamics of provoked root encounters. This study considers detailed observations of the dynamics of inter-specific root interactions, in the vertical plane, at both the whole root system and the individual root levels. Corn and young rubber trees were grown in association in artificial conditions that excluded the possibility of competition for resources, using rhizoboxes, i.e. thin containers with a transparent wall. The paper presents novel approaches, such as the study of root system growth trajectories, to document root system development in terms of overall growth rate, colonization of soil space and individual root growth patterns. It was found that (i) corn roots developed towards rubber roots until a contact was established, (ii) rubber roots expanded faster and more vertically in association with corn, (iii) the expansion rates of both root systems varied concomitantly and (iv) inter-specific root encounters resulted in reduced elongation rates in both species. Implications of these results for corn/rubber inter-cropping are discussed. This work advocates in favour of a better understanding of under-ground facilitative effects between species. If understood enough to be manipulated, such knowledge might become a powerful tool for the design of more sustainable and efficient cropping systems. [ABSTRACT FROM AUTHOR]

Weeds represent a significant problem in Thailand's sugarcane production. The various cycles of sugarcane cultivation result in degrees of weed severity in which each species requires a different weed control method, the most popular of which is the post-emergence herbicide method. However, sugarcane farmers often use incorrect rates, and operators' safety is missing or applications are not selective, causing toxicity and interrupted growth of sugarcane. The effects of post-emergence herbicide types, time, and application rates are presented herein, through an experiment in Northeast Thailand, conducted in a randomized complete block design (RCBD) with four replications. The herbicides paraquat and ametryn were evaluated, with paraquat being more effective, yet resulting in higher toxicity and lower yield components. We may conclude through our experiments that ametryn and paraquat can be applied only once for sugarcane at the tillering stage and at rates of 540 and 2400 g ai ha−1, respectively. These rates were lower than the recommended rates, which represented the minimum doses necessary to control Thailand's dominant weed species like Brachiaria distachya (L.) Stapf., Dactyloctenium aegyptium (L.) P.B., Praxelis clematidea R.M King & H. Rob and Pennisetum polystachion (L.) Schult. Consequently, the adequate control of weeds is a rather case-specific situation and therefore each weed species should be taken into account. [ABSTRACT FROM AUTHOR]

Climate change is viewed as a cause in accelerating the rate of invasion by alien species in addition to the globalization of anthropogenic activities. Ecological niche modeling has become an instrument in predicting invasion from natural or invaded ranges to uninvaded ranges based on the presence records of organisms and environmental parameters. This study explored the changes in the distributions of globally noxious alien species (Aegratina adenophora, Ageratum conyzoides, Chromolaena odorata, Lantana camara, Mikania micrantha, and Parthenium hysterophorus) in Bhutan, to provide evidence that even a mountain environment is under the threat of invasion given the change in climatic conditions. With fairly high accuracy, the model results suggest that there will be a potential increase in the areas of invasion among most of the species, except Parthenium hysterophorus, which will experience a northerly shift and decline in distribution. The results also indicate changes in patterns of invasion, some becoming more concentrated toward a given direction, while others become more dispersed over time. This study provides a framework that can be used in the strategic control of the species, future detection surveys, and further research. [ABSTRACT FROM AUTHOR]