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This article examines the way the Maya-Mam, an Indigenous people divided by the Guatemala–Mexico border, define territory in relation to and across state borders. As state borders geographically, socially, culturally, and politically divide the pueblo Mam, state maps bolster these divisions and state subjugation by promoting a nation-state framework that circumscribes the Mam within its borders. However, the Mam are problematizing state depictions of spatiality: they denaturalize state borders by articulating alternative ontologies of territory. This study shows that in their everyday lives, Mam councils, activists, and individuals aim to promote broader cross-border Mam unification to better defend territory from potential harm. They use a dual-prong approach for articulating territory: through the development of narratives that draw upon a more holistic understanding of territory's 'nature' and by making counter-maps that incorporate Mam understanding of territory. I argue that these Indigenous efforts weave together a resistance to and refusal of state frames. [ABSTRACT FROM AUTHOR]

The discovery and characterization of bacterial carbohydrate-active enzymes is a fundamental component of biotechnology innovation, particularly for renewable fuels and chemicals; however, these studies have increasingly transitioned to exploring the complex regulation required for recalcitrant polysaccharide utilization. This pivot is largely due to the current need to engineer and optimize enzymes for maximal degradation in industrial or biomedical applications. Given the structural simplicity of a single cellulose polymer, and the relatively few enzyme classes required for complete bioconversion, the regulation of cellulases in bacteria has been thoroughly discussed in the literature. However, the diversity of hemicelluloses found in plant biomass and the multitude of carbohydrate-active enzymes required for their deconstruction has resulted in a less comprehensive understanding of bacterial hemicellulase-encoding gene regulation. Here we review the mechanisms of this process and common themes found in the transcriptomic response during plant biomass utilization. By comparing regulatory systems from both Gram-negative and Gram-positive bacteria, as well as drawing parallels to cellulase regulation, our goals are to highlight the shared and distinct features of bacterial hemicellulase-encoding gene regulation and provide a set of guiding questions to improve our understanding of bacterial lignocellulose utilization. Key points: • Canonical regulatory mechanisms for bacterial hemicellulase-encoding gene expression include hybrid two-component systems (HTCS), extracytoplasmic function (ECF)-σ/anti-σ systems, and carbon catabolite repression (CCR). • Current transcriptomic approaches are increasingly being used to identify hemicellulase-encoding gene regulatory patterns coupled with computational predictions for transcriptional regulators. • Future work should emphasize genetic approaches to improve systems biology tools available for model bacterial systems and emerging microbes with biotechnology potential. Specifically, optimization of Gram-positive systems will require integration of degradative and fermentative capabilities, while optimization of Gram-negative systems will require bolstering the potency of lignocellulolytic capabilities. [ABSTRACT FROM AUTHOR]

The discovery and characterization of bacterial carbohydrate-active enzymes is a fundamental component of biotechnology innovation, particularly for renewable fuels and chemicals; however, these studies have increasingly transitioned to exploring the complex regulation required for recalcitrant polysaccharide utilization. This pivot is largely due to the current need to engineer and optimize enzymes for maximal degradation in industrial or biomedical applications. Given the structural simplicity of a single cellulose polymer, and the relatively few enzyme classes required for complete bioconversion, the regulation of cellulases in bacteria has been thoroughly discussed in the literature. However, the diversity of hemicelluloses found in plant biomass and the multitude of carbohydrate-active enzymes required for their deconstruction has resulted in a less comprehensive understanding of bacterial hemicellulase-encoding gene regulation. Here we review the mechanisms of this process and common themes found in the transcriptomic response during plant biomass utilization. By comparing regulatory systems from both Gram-negative and Gram-positive bacteria, as well as drawing parallels to cellulase regulation, our goals are to highlight the shared and distinct features of bacterial hemicellulase-encoding gene regulation and provide a set of guiding questions to improve our understanding of bacterial lignocellulose utilization. Key points: • Canonical regulatory mechanisms for bacterial hemicellulase-encoding gene expression include hybrid two-component systems (HTCS), extracytoplasmic function (ECF)-σ/anti-σ systems, and carbon catabolite repression (CCR). • Current transcriptomic approaches are increasingly being used to identify hemicellulase-encoding gene regulatory patterns coupled with computational predictions for transcriptional regulators. • Future work should emphasize genetic approaches to improve systems biology tools available for model bacterial systems and emerging microbes with biotechnology potential. Specifically, optimization of Gram-positive systems will require integration of degradative and fermentative capabilities, while optimization of Gram-negative systems will require bolstering the potency of lignocellulolytic capabilities. [ABSTRACT FROM AUTHOR]

Plant mannans are a component of lignocellulose that can have diverse compositions in terms of its backbone and side‐chain substitutions. Consequently, the degradation of mannan substrates requires a cadre of enzymes for complete reduction to substituent monosaccharides that can include mannose, galactose, and/or glucose. One bacterium that possesses this suite of enzymes is the Gram‐negative saprophyte Cellvibrio japonicus, which has 10 predicted mannanases from the Glycoside Hydrolase (GH) families 5, 26, and 27. Here we describe a systems biology approach to identify and characterize the essential mannan‐degrading components in this bacterium. The transcriptomic analysis uncovered significant changes in gene expression for most mannanases, as well as many genes that encode carbohydrate active enzymes (CAZymes) when mannan was actively being degraded. A comprehensive mutational analysis characterized 54 CAZyme‐encoding genes in the context of mannan utilization. Growth analysis of the mutant strains found that the man26C, aga27A, and man5D genes, which encode a mannobiohydrolase, α‐galactosidase, and mannosidase, respectively, were important for the deconstruction of galactomannan, with Aga27A being essential. Our updated model of mannan degradation in C. japonicus proposes that the removal of galactose sidechains from substituted mannans constitutes a crucial step for the complete degradation of this hemicellulose. [ABSTRACT FROM AUTHOR]

The article discusses the versatility of the fishbone diagram, also known as the Ishikawa diagram, in performing root cause analysis and aiding design solutions.

Our current understanding of enzymatic polysaccharide degradation has come from a huge number of in vitro studies with purified enzymes. While this vast body of work has been invaluable in identifying and characterizing novel mechanisms of action and engineering desirable traits into these enzymes, a comprehensive picture of how these enzymes work as part of a native in vivo system is less clear. Recently, several model bacteria have emerged with genetic systems that allow for a more nuanced study of carbohydrate active enzymes (CAZymes) and how their activity affects bacterial carbon metabolism. With these bacterial model systems, it is now possible to not only study a single nutrient system in isolation (i.e., carbohydrate degradation and carbon metabolism), but also how multiple systems are integrated. Given that most environmental polysaccharides are carbon rich but nitrogen poor (e.g., lignocellulose), the interplay between carbon and nitrogen metabolism in polysaccharide-degrading bacteria can now be studied in a physiologically relevant manner. Therefore, in this review, we have summarized what has been experimentally determined for CAZyme regulation, production, and export in relation to nitrogen metabolism for two Gram-positive (Caldicellulosiruptor bescii and Clostridium thermocellum) and two Gram-negative (Bacteroides thetaiotaomicron and Cellvibrio japonicus) polysaccharide-degrading bacteria. By comparing and contrasting these four bacteria, we have highlighted the shared and unique features of each, with a focus on in vivo studies, in regard to carbon and nitrogen assimilation. We conclude with what we believe are two important questions that can act as guideposts for future work to better understand the integration of carbon and nitrogen metabolism in polysaccharide-degrading bacteria. Key points: • Regardless of CAZyme deployment system, the generation of a local pool of oligosaccharides is a common strategy among Gram-negative and Gram-positive polysaccharide degraders as a means to maximally recoup the energy expenditure of CAZyme production and export. • Due to the nitrogen deficiency of insoluble polysaccharide-containing substrates, Gram-negative and Gram-positive polysaccharide degraders have a diverse set of strategies for supplementation and assimilation. • Future work needs to precisely characterize the energetic expenditures of CAZyme deployment and bolster our understanding of how carbon and nitrogen metabolism are integrated in both Gram-negative and Gram-positive polysaccharide-degrading bacteria, as both of these will significantly influence a given bacterium's suitability for biotechnology applications. [ABSTRACT FROM AUTHOR]

Chitin utilization by microbes plays a significant role in biosphere carbon and nitrogen cycling, and studying the microbial approaches used to degrade chitin will facilitate our understanding of bacterial strategies to degrade a broad range of recalcitrant polysaccharides. The early stages of chitin depolymerization by the bacterium Cellvibrio japonicus have been characterized and are dependent on one chitin‐specific lytic polysaccharide monooxygenase and nonredundant glycoside hydrolases from the family GH18 to generate chito‐oligosaccharides for entry into metabolism. Here, we describe the mechanisms for the latter stages of chitin utilization by C. japonicus with an emphasis on the fate of chito‐oligosaccharides. Our systems biology approach combined transcriptomics and bacterial genetics using ecologically relevant substrates to determine the essential mechanisms for chito‐oligosaccharide transport and catabolism in C. japonicus. Using RNAseq analysis we found a coordinated expression of genes that encode polysaccharide‐degrading enzymes. Mutational analysis determined that the hex20B gene product, predicted to encode a hexosaminidase, was required for efficient utilization of chito‐oligosaccharides. Furthermore, two gene loci (CJA_0353 and CJA_1157), which encode putative TonB‐dependent transporters, were also essential for chito‐oligosaccharides utilization. This study further develops our model of C. japonicus chitin metabolism and may be predictive for other environmentally or industrially important bacteria. [ABSTRACT FROM AUTHOR]

In a competitive microbial environment, nutrient acquisition is a major contributor to the survival of any individual bacterial species, and the ability to access uncommon energy sources can provide a fitness advantage. One set of soluble carbohydrates that have attracted increased attention for use in biotechnology and biomedicine is the α-diglucosides. Maltose is the most well-studied member of this class; however, the remaining four less common α-diglucosides (trehalose, kojibiose, nigerose, and isomaltose) are increasingly used in processed food and fermented beverages. The consumption of trehalose has recently been shown to be a contributing factor in gut microbiome disease as certain pathogens are using α-diglucosides to outcompete native gut flora. Kojibiose and nigerose have also been examined as potential prebiotics and alternative sweeteners for a variety of foods. Compared to the study of maltose metabolism, our understanding of the synthesis and degradation of uncommon α-diglucosides is lacking, and several fundamental questions remain unanswered, particularly with regard to the regulation of bacterial metabolism for α-diglucosides. Therefore, this minireview attempts to provide a focused analysis of uncommon α-diglucoside metabolism in bacteria and suggests some future directions for this research area that could potentially accelerate biotechnology and biomedicine developments. Key points: • α-diglucosides are increasingly important but understudied bacterial metabolites. •Kinetically superior α-diglucoside enzymes require few amino acid substitutions. •In vivo studies are required to realize the biotechnology potential of α-diglucosides. [ABSTRACT FROM AUTHOR]

This article examines the narrative identity work that undocumented youth activists used to shift the boundary of and claim membership in the social category "American." Despite the seemingly inflexible, legalistic way American is conventionally defined in the United States (as a native-born or naturalized citizen), activists adopted a fluid interpretation that made room for them. Our theoretical contribution centers on articulating how the construction and deployment of identity codes within narrative processes can open spaces for claiming collective identification and belonging in seemingly closed collectivities. However, the use of such codes may unintentionally close access for others seeking to identify as part of the same collective. Data were collected through ethnographic fieldwork and in-depth interviews, and our analysis integrates insights from sociological research on identity with interdisciplinary work on storytelling. We outline activists' three main approaches to signifying Americanness, including constructing American as (1) a subjective feeling, (2) a status that can be earned, and (3) a quality that one can demonstrate through political engagement in the United States. We conclude by discussing the implications of such narrative identity work strategies for other undocumented immigrants who may face challenges presenting themselves as equally fitting "Americans." [ABSTRACT FROM AUTHOR]

Understanding the complex growth and metabolic dynamics in microorganisms requires advanced kinetic models containing both metabolic reactions and enzymatic regulation to predict phenotypic behaviors under different conditions and perturbations. Most current kinetic models lack gene expression dynamics and are separately calibrated to distinct media, which consequently makes them unable to account for genetic perturbations or multiple substrates. This challenge limits our ability to gain a comprehensive understanding of microbial processes towards advanced metabolic optimizations that are desired for many biotechnology applications. Here, we present an integrated computational and experimental approach for the development and optimization of mechanistic kinetic models for microbial growth and metabolic and enzymatic dynamics. Our approach integrates growth dynamics, gene expression, protein secretion, and gene‐deletion phenotypes. We applied this methodology to build a dynamic model of the growth kinetics in batch culture of the bacterium Cellvibrio japonicus grown using either cellobiose or glucose media. The model parameters were inferred from an experimental data set using an evolutionary computation method. The resulting model was able to explain the growth dynamics of C. japonicus using either cellobiose or glucose media and was also able to accurately predict the metabolite concentrations in the wild‐type strain as well as in β‐glucosidase gene deletion mutant strains. We validated the model by correctly predicting the non‐diauxic growth and metabolite consumptions of the wild‐type strain in a mixed medium containing both cellobiose and glucose, made further predictions of mutant strains growth phenotypes when using cellobiose and glucose media, and demonstrated the utility of the model for designing industrially‐useful strains. Importantly, the model is able to explain the role of the different β‐glucosidases and their behavior under genetic perturbations. This integrated approach can be extended to other metabolic pathways to produce mechanistic models for the comprehensive understanding of enzymatic functions in multiple substrates. [ABSTRACT FROM AUTHOR]

Successful management of insect crop pests requires an understanding of the cues and spatial scales at which they function to affect rates of attack of preferred and non‐preferred host plants. A long‐standing conceptual framework in insect–plant ecology posits that there is hierarchical structure spanning host location, acceptance and attack that could be exploited for integrated pest management.We investigated how plant‐ and insect‐derived chemical cues affect successive decisions of host choice in aggregating insects, and tested predictions in the Cucurbita pepo–Acalymma vittatum system. Acalymma vittatum is an aggregating specialist beetle pest that strongly prefers zucchini (C. p. pepo) to summer squash (C. p. ovifera), two independent domesticates of C. pepo. We hypothesized that subspecies‐specific plant traits, especially volatile cues, interact with the male‐produced aggregation pheromone to amplify beetle preference for C. p. pepo.Differential beetle attack of C. pepo subspecies in the field is not determined by plant traits that affect host finding or differential aggregation due to pheromones: across two years, beetles had strong density‐dependent attraction to both subspecies when male beetles were feeding, and no interactions between plant volatiles and the male‐produced pheromone were detected. In the absence of male pheromone emission, beetles were equally unattracted to plants with or without beetle feeding.In contrast, plant traits that mediate insect acceptance appear to underlie differences in preference. At a local scale, beetles did not accept and emigrated from C. p. ovifera compared to C. p. pepo. Distinct volatile emissions were observed between subspecies, but further work is needed to identify if these volatiles promote emigration.Synthesis and applications. By dissecting pest preference during successive host choice decisions, we isolated a trait with implications for pest management. Beetles on cucurbits can be managed by employing cultivars with differential susceptibility (e.g. trap cropping), and the mechanistic knowledge presented here informs best practices and limitations for on‐farm applications. More broadly, pest management in diversified cropping systems can be enhanced through understanding how plant preference gradients affect herbivore movement and behaviour, and plant breeders can target traits to reduce herbivory in such systems. [ABSTRACT FROM AUTHOR]

This article analyzes the effectiveness of an activity we developed to help students better understand intersectionality. Intersectionality is an analytic concept that signifies ways that inequalities may overlap to create unique forms of privilege and subjugation. In the activity, students use assigned vignettes from the perspective of research participants in our own ethnographic data (including excerpts from interviews and field notes) to interact with peers assigned both similar and dissimilar perspectives and experiences. The vignettes draw attention to intersectionality in a way that helps students embody participants' experiences with privilege and subjugation. Our analysis of the activity's effectiveness demonstrates that when learning is interactive, is dialogical, and draws from real narratives, students and instructors can effectively explore nuanced interpretations of relatively tough concepts, such as intersectionality. We argue that the embodiment of ethnographic data is a useful mechanism for helping students connect abstract sociological concepts to uniquely experienced realities. [ABSTRACT FROM AUTHOR]

Although the scientific literature is replete with reports that host and plant volatiles elicit behavioural responses in Trichogramma, most do not compare the relative importance of olfaction, vision, or their interaction; this may be an oversight. We conducted experiments to evaluate whether vision, odour, or their interaction mediated host location by T. ostriniae over small spatial scales. T. ostriniae were given choices between odour cues and visual cues from Ephestia kuehniella, Ostrinia nubilalis, Manduca sexta, and polymer and glass beads, or between visual cues with and without an odour component. There generally was no preference for an odour component, suggesting that random encounter or visual guidance was the likely mechanism of location. For females who successfully located a cue, we found little evidence that odour was the primary mode of detection. However, when M. sexta eggs were the odour source, and compared to eggs washed with solvent to remove volatiles, females showed a predilection toward visual cues with an odour component. However, when Manduca spp. moth scales were applied to glass beads under conditions of high visual contrast, there was no significant preference for odourised visual cues. There is little doubt that Trichogramma rely on olfaction, but many studies include no visual components, no evaluation of the magnitude of olfaction relative to vision nor their interaction. We offer that random movement and vision may determine much of host-finding, especially with Trichogramma augmentatively released into monocultures, but there is likely some interaction with odours at some small spatial scale. [ABSTRACT FROM AUTHOR]

Carbohydrate degradation by microbes plays an important role in global nutrient cycling, human nutrition, and biotechnological applications. Studies that focus on the degradation of complex recalcitrant polysaccharides are challenging because of the insolubility of these substrates as found in their natural contexts. Specifically, current methods to examine carbohydrate-based biomass degradation using bacterial strains or purified enzymes are not compatible with high-throughput screening using complex insoluble materials. In this report, we developed a small 3D printed filter device that fits inside a microplate well that allows for the free movement of bacterial cells, media, and enzymes while containing insoluble biomass. These devices do not interfere with standard microplate readers and can be used for both short- (24–48 h) and long-duration (> 100 h) experiments using complex insoluble substrates. These devices were used to quantitatively screen in a high-throughput manner environmental isolates for their ability to grow using lignocellulose or rice grains as a sole nutrient source. Additionally, we determined that the microplate-based containment devices are compatible with existing enzymatic assays to measure activity against insoluble biomass. Overall, these microplate containment devices provide a platform to study the degradation of complex insoluble materials in a high-throughput manner and have the potential to help uncover ecologically important aspects of bacterial metabolism as well as to accelerate biotechnological innovation. [ABSTRACT FROM AUTHOR]

No abstract available for this article. [ABSTRACT FROM PUBLISHER]

Summary: Lignocellulose degradation by microbes plays a central role in global carbon cycling, human gut metabolism and renewable energy technologies. While considerable effort has been put into understanding the biochemical aspects of lignocellulose degradation, much less work has been done to understand how these enzymes work in an in vivo context. Here, we report a systems level study of xylan degradation in the saprophytic bacterium Cellvibrio japonicus. Transcriptome analysis indicated seven genes that encode carbohydrate active enzymes were up‐regulated during growth with xylan containing media. In‐frame deletion analysis of these genes found that only gly43F is critical for utilization of xylo‐oligosaccharides, xylan, and arabinoxylan. Heterologous expression of gly43F was sufficient for the utilization of xylo‐oligosaccharides in Escherichia coli. Additional analysis found that the xyn11A, xyn11B, abf43L, abf43K, and abf51A gene products were critical for utilization of arabinoxylan. Furthermore, a predicted transporter (CJA_1315) was required for effective utilization of xylan substrates, and we propose this unannotated gene be called xntA (xylan transporter A). Our major findings are (i) C. japonicus employs both secreted and surface associated enzymes for xylan degradation, which differs from the strategy used for cellulose degradation, and (ii) a single cytoplasmic β‐xylosidase is essential for the utilization of xylo‐oligosaccharides. [ABSTRACT FROM AUTHOR]

Lignocellulose degradation is central to the carbon cycle and renewable biotechnologies. The xyloglucan (XyG), β(1→3)/β(1→4) mixed-linkage glucan (MLG) and β(1→3) glucan components of lignocellulose represent significant carbohydrate energy sources for saprophytic microorganisms. The bacterium Cellvibrio japonicus has a robust capacity for plant polysaccharide degradation, due to a genome encoding a large contingent of Carbohydrate-Active enZymes (CAZymes), many of whose specific functions remain unknown. Using a comprehensive genetic and biochemical approach, we have delineated the physiological roles of the four C. japonicus glycoside hydrolase family 3 (GH3) members on diverse β-glucans. Despite high protein sequence similarity and partially overlapping activity profiles on disaccharides, these β-glucosidases are not functionally equivalent. Bgl3A has a major role in MLG and sophorose utilization, and supports β(1→3) glucan utilization, while Bgl3B underpins cellulose utilization and supports MLG utilization. Bgl3C drives β(1→3) glucan utilization. Finally, Bgl3D is the crucial β-glucosidase for XyG utilization. This study not only sheds the light on the metabolic machinery of C. japonicus, but also expands the repertoire of characterized CAZymes for future deployment in biotechnological applications. In particular, the precise functional analysis provided here serves as a reference for informed bioinformatics on the genomes of other Cellvibrio and related species. [ABSTRACT FROM AUTHOR]

How does the collective identification of indigenous peoples who span contemporary state borders align with and diverge from those borders? This article analyzes how the Mam, an indigenous people divided by the Guatemala-Mexico border, identify collectively. We further existing sociological literature on collective identity "boundary work" by demonstrating how it is shaped by spatial, and not just symbolic, boundaries. Mam individuals and organizations define symbolic boundaries that sustain political-administrative borders (such as municipal divisions within Guatemala and Guatemala's border with Mexico) in some cases and conflict with them in others. We suggest that state borders and collective identification boundaries become incongruous and contested as social contexts shift and conclude that the symbolic struggle of how to identify as a collectivity has material, and potentially spatial, consequences. [ABSTRACT FROM AUTHOR]

Degradation of polysaccharides forms an essential arc in the carbon cycle, provides a percentage of our daily caloric intake, and is a major driver in the renewable chemical industry. Microorganisms proficient at degrading insoluble polysaccharides possess large numbers of carbohydrate active enzymes (CAZymes), many of which have been categorized as functionally redundant. Here we present data that suggests that CAZymes that have overlapping enzymatic activities can have unique, non-overlapping biological functions in the cell. Our comprehensive study to understand cellodextrin utilization in the soil saprophyte Cellvibrio japonicus found that only one of four predicted β-glucosidases is required in a physiological context. Gene deletion analysis indicated that only the cel3B gene product is essential for efficient cellodextrin utilization in C. japonicus and is constitutively expressed at high levels. Interestingly, expression of individual β-glucosidases in Escherichia coli K-12 enabled this non-cellulolytic bacterium to be fully capable of using cellobiose as a sole carbon source. Furthermore, enzyme kinetic studies indicated that the Cel3A enzyme is significantly more active than the Cel3B enzyme on the oligosaccharides but not disaccharides. Our approach for parsing related CAZymes to determine actual physiological roles in the cell can be applied to other polysaccharide-degradation systems. [ABSTRACT FROM AUTHOR]

Trichogramma ostriniaeis a parasitoid wasp species that is used as a biological control for several lepidopteran agricultural pests. Our study examined the effects of relative humidity (RH) on the behaviour of femaleT. ostriniae.In Y-tube RH choice assays, wasps generally chose higher RH over lower RH but the latency time taken to make a choice displayed no clear patterns that could be ascribed to the magnitude of the RH difference between arms of the Y-tube. In trials conducted in glass arenas with fixed humidities, the conditional probabilities of transition from searching to interacting with the leaf disk, and from interacting with leaf disks to antennal egg drumming and oviposition, were not significantly different among the RH levels, nor were there differences in latency times. These findings suggest that the level of RH may influence habitat choice but have little effect on search efficacy. [ABSTRACT FROM PUBLISHER]

Study of recalcitrant polysaccharide degradation by bacterial systems is critical for understanding biological processes such as global carbon cycling, nutritional contributions of the human gut microbiome, and the production of renewable fuels and chemicals. One bacterium that has a robust ability to degrade polysaccharides is the Gram-negative saprophyte Cellvibrio japonicus. A bacterium with a circuitous history, C. japonicus underwent several taxonomy changes from an initially described Pseudomonas sp. Most of the enzymes described in the pre-genomics era have also been renamed. This review aims to consolidate the biochemical, structural, and genetic data published on C. japonicus and its remarkable ability to degrade cellulose, xylan, and pectin substrates. Initially, C. japonicus carbohydrate-active enzymes were studied biochemically and structurally for their novel polysaccharide binding and degradation characteristics, while more recent systems biology approaches have begun to unravel the complex regulation required for lignocellulose degradation in an environmental context. Also included is a discussion for the future of C. japonicus as a model system, with emphasis on current areas unexplored in terms of polysaccharide degradation and emerging directions for C. japonicus in both environmental and biotechnological applications. [ABSTRACT FROM AUTHOR]

Aerodynamic sorting of host eggs exposed toTrichogrammaegg parasitoids improved the percentage parasitism of retained product. Losses of parasitised eggs declined as percentage parasitism of the unsorted eggs increased.Trichogrammaeclosion from parasitised eggs was similar for the unsorted and retained fractions; emergence from the parasitised culls was significantly lower. [ABSTRACT FROM PUBLISHER]

The striped cucumber beetle [Acalymma vittatum (F.)] is a specialist pest of cucurbits throughout its range in the United States and Canada. Improved integrated pest management options are needed across the pest's range, especially on organic farms where there are few effective controls. Trap cropping in cucurbits is an option, but there are significant challenges to the technique. Because cucurbit flowers are highly attractive to the beetles, four field experiments tested whether cultivar and phenology interact to preferentially aggregate beetles. The first experiment tested the hypothesis that cucurbit flowers were more attractive to striped cucumber beetles than was foliage. The second experiment tested whether there were differences in beetle aggregation between two relatively attractive cultivars. The third and fourth experiments were factorial designs with two plant cultivars and two levels of flowering to specifically test for an interaction of cultivar and flowering. Results indicated that flowers were more attractive than foliage, beetle aggregation was affected by plant cultivar, and that there was an interaction of cultivar with flowering. We conclude that a single cultivar may be sufficient to serve as a generic trap crop to protect a wide variety of cucurbits. [ABSTRACT FROM AUTHOR]

Microbial depolymerization of plant cell walls contributes to global carbon balance and is a critical component of renewable energy. The genomes of lignocellulose degrading microorganisms encode diverse classes of carbohydrate modifying enzymes, although currently there is a paucity of knowledge on the role of these proteins in vivo. We report the comprehensive analysis of the cellulose degradation system in the saprophytic bacterium C ellvibrio japonicus. Gene expression profiling of C . japonicus demonstrated that three of the 12 predicted β-1,4 endoglucanases ( cel5A, cel5B, and cel45A) and the sole predicted cellobiohydrolase ( cel6A) showed elevated expression during growth on cellulose. Targeted gene disruptions of all 13 predicted cellulase genes showed that only cel5B and cel6A were required for optimal growth on cellulose. Our analysis also identified three additional genes required for cellulose degradation: lpmo10B encodes a lytic polysaccharide monooxygenase ( LPMO), while cbp2D and cbp2E encode proteins containing carbohydrate binding modules and predicted cytochrome domains for electron transfer. CjLPMO10B oxidized cellulose and Cbp2 D demonstrated spectral properties consistent with redox function. Collectively, this report provides insight into the biological role of LPMOs and redox proteins in cellulose utilization and suggests that C . japonicus utilizes a combination of hydrolytic and oxidative cleavage mechanisms to degrade cellulose. [ABSTRACT FROM AUTHOR]

The degradation of plant biomass by saprophytes is an ecologically important part of the global carbon cycle, which has also inspired a vast diversity of industrial enzyme applications. The xyloglucans ( XyGs) constitute a family of ubiquitous and abundant plant cell wall polysaccharides, yet the enzymology of XyG saccharification is poorly studied. Here, we present the identification and molecular characterization of a complex genetic locus that is required for xyloglucan utilization by the model saprophyte C ellvibrio japonicus. In harness, transcriptomics, reverse genetics, enzyme kinetics, and structural biology indicate that the encoded cohort of an α-xylosidase, a β-galactosidase, and an α- l-fucosidase is specifically adapted for efficient, concerted saccharification of dicot (fucogalacto)xyloglucan oligosaccharides following import into the periplasm via an associated TonB-dependent receptor. The data support a biological model of xyloglucan degradation by C . japonicus with striking similarities - and notable differences - to the complex polysaccharide utilization loci of the Bacteroidetes. [ABSTRACT FROM AUTHOR]

Adjuvants are materials added to vaccines to enhance the immunological response to an antigen. QS-21 is a natural product adjuvant under investigation in numerous vaccine clinical trials, but its use is constrained by scarcity, toxicity, instability and an enigmatic molecular mechanism of action. Herein we describe the development of a minimal QS-21 analogue that decouples adjuvant activity from toxicity and provides a powerful platform for mechanistic investigations. We found that the entire branched trisaccharide domain of QS-21 is dispensable for adjuvant activity and that the C4-aldehyde substituent, previously proposed to bind covalently to an unknown cellular target, is also not required. Biodistribution studies revealed that active adjuvants were retained preferentially at the injection site and the nearest draining lymph nodes compared with the attenuated variants. Overall, these studies have yielded critical insights into saponin structure-function relationships, provided practical synthetic access to non-toxic adjuvants, and established a platform for detailed mechanistic studies. [ABSTRACT FROM AUTHOR]

We evaluated a combination of noninsecticidal alternatives to control trunk-damaging dogwood borer, Synanthedon scitula (Harris), consisting of novel barrier technologies, used alone or in combination with mating disruption. Barrier formulations evaluated included fibrous barriers of nonwoven ethylene vinyl acetate (EVA) and nonfibrous barriers of rubberized paint (elastomer) used in building coatings. To examine efficacy of dogwood borer control in orchards, all barrier trials were replicated in field tests, both in combination with mating disruption and without it. Trunk inspections to determine whether mating disruption and barriers effectively reduced actual tree infestation showed pheromone disruption significantly reduced infestation compared with the untreated check, but was not as effective as trunk handgun sprays of chlorpyrifos. EVA trunk barriers were effective in preventing borer infestation compared with untreated trees. The elastomer did not differ from the check or the EVA treatment. There was no interaction between disruption and barrier treatments. Barrier field life and durability was assessed over 2 yr by comparing degradation over time due to weathering and other environmental effects including animal damage. The EVA persisted and remained more intact than the elastomer, but was in need of reapplication after 2 yr. Barriers were also screened for efficacy against voles in small-plot trials in nonorchard locations with known high vole pressure; they were tested either alone, combined with a repellent (thiram), or, in the case of the elastomer only, combined with an abrasive (sand). Only the EVA significantly lowered vole chewing damage relative to the untreated checks. [ABSTRACT FROM AUTHOR]

As recent research demonstrates that recognition-based reforms have not addressed many of the substantive demands of indigenous movements, many scholars claim that the movements have moved beyond recognition to focus now on the effects of neoliberal capitalism and material claims. However, setting aside formal recognition of indigenous peoples as a focus of analytic concern may have the unintended effect of drawing attention away from two issues: first, recognition continues to be a pertinent concern for some indigenous movements; and second, recognition and redistribution are understood by many indigenous people as inherently linked. Our analysis focuses on the case of the Mapuche in Chile, showing that they are not ‘after’ recognition or redistribution; their ongoing struggle for justice entails demands that lie at the intersection of the two. The import as well as the contested character of recognition can be seen in state policy, the Mapuche’s own demands, local elites’ narratives of exclusion, and the transborder goals of the movement. We argue that combating the ongoing harms faced by indigenous peoples requires developing an understanding of recognition and redistribution that views them as inherently linked rather than as different types of claims. [ABSTRACT FROM AUTHOR]

Trichogramma ostriniae was imported into the USA from China and it continues to be evaluated as a biological control agent against the European corn borer and other lepidopteran pest species. A natural enemy's ability to overwinter is a facet of its biology with important ramifications for biological control and non-target effects. Thus, studies were conducted to examine the ability of the introduced egg parasitoid to survive over winters in central New York State. Eggs of Ostrinia nubilalis, Ephestia kuehniella, Trichoplusia ni, Helicoverpa zea and Utetheisa ornatrix were subjected to parasitism by adult T. ostriniae and then placed out of doors and exposed to winter conditions. For trials initiated in 2003 and 2004, the adult parental wasps were exposed to a diapause-inducing photoperiod and temperature regime in the laboratory; in 2010, parental wasps were conditioned out of doors and prior to the onset of winter conditions. Emergence of their progeny was monitored over time by taking aliquots of parasitised eggs, and holding them under warm conditions until emergence was complete. The level of wasp emergence generally displayed a decline followed by gradual increase until spring. Levels of overwintering ranged from 1% for O. nubilalis to 76% for E. kuehniella, and logistic regression indicated that the odds of overwintering was dependent on the year, host species, time out of doors and varied over exposure time depending on host. The potential to overwinter in New York was further confirmed by positive identification of T. ostriniae from naturally occurring O. nubilalis eggs collected from field sites where augmentative releases had been made in previous years. [ABSTRACT FROM AUTHOR]

Trichogramma ostriniae has shown success as a biological control agent for European corn borer (Ostrinia nubilalis) in sweet corn and the species offers potential for suppression of lepidopteran pests of field corn. Field corn is typically planted at higher densities, is taller, and has greater leaf area than sweet corn, presenting a possible restriction on T. ostriniae dispersal and efficacy. Therefore, parasitoid dispersal in field corn from the centre of a 6.25 ha square grid was determined using sticky cards to capture adult T. ostriniae and sentinel eggs of O. nubilalis to monitor parasitism after releases of ~1 million of T. ostriniae each into four fields of corn. Dispersal was rapid and extensive, achieving distances of ~175 m within 4–7 days after release. The pattern of movement fit well with a diffusion model of dispersal, with the greatest level of dispersal occurring from 7 to 10 days post-release. Parasitism of O. nubilalis sentinel egg masses declined linearly with distance from the release foci, and was also greatest 7–10 days post-release. However, measurement of association showed no significant differences between the spatial distributions of sticky trap captures and percentage parasitism of O. nubilalis egg masses. The distances from the release point that encompassed 98% of re-captured T. ostriniae increased over time and were estimated to range from a low of 100 m at 4 days post-release to 365 m at 14 days post-release. The results of this research suggest that T. ostriniae relies initially on random movement to locate host patches, and that a single release locus per hectare would be sufficient in field corn. [ABSTRACT FROM PUBLISHER]

Cold storage can be used to slow development, facilitate accumulation of the organisms and accommodate fluctuating demand for augmentative biological control agents. Previous research suggested the possibility of improving cold storage of Trichogrammatids by recurrent warming, so we subjected Trichogramma ostriniae juveniles within Ephestia kuehniella host eggs to either 2°C constant or to 2°C with twice-weekly recurrent warming for 3 h to 20°C. Parasitoid subsamples were allowed to mature for 1–9 days before placement in cold storage for up to 8 weeks. Parasitism by parentals, progeny emergence and fecundity and longevity of progeny were measured weekly for 8 weeks. Relative to constant 2°C, recurrent warming generally improved emergence, fecundity and longevity, and all the response variables were affected by the interaction of temperature regimen, parasitoid maturity class, and cold storage duration. This implies the utility of recurrent warming to improve egg parasitoid performance and for extending the duration of cold storage. [ABSTRACT FROM PUBLISHER]

We have developed a simple, rapid, quantitative colorimetric assay to measure cellulose degradation based on the absorbance shift of Congo red dye bound to soluble cellulose. We term this assay 'Congo Red Analysis of Cellulose Concentration,' or 'CRACC.' CRACC can be performed directly in culture media, including rich and defined media containing monosaccharides or disaccharides (such as glucose and cellobiose). We show example experiments from our laboratory that demonstrate the utility of CRACC in probing enzyme kinetics, quantifying cellulase secretion, and assessing the physiology of cellulolytic organisms. CRACC complements existing methods to assay cellulose degradation, and we discuss its utility for a variety of applications. [ABSTRACT FROM AUTHOR]

The development of cost-effective biofuels will require improvements in the efficiency of biomass deconstruction, a process typically carried out by lignocellulose-degrading enzymes. Environmental microbes represent an abundant and diverse source of lignocelluloses-degrading enzymes for use in biotechnology. However, identification of microorganisms that possess these enzymes has been slowed by a lack of rapid screening methodologies, particularly those that utilize native lignocellulosic substrates. In this report, we describe a new, solid-phase screening system for the identification of microbes capable of lignocellulose degradation. The critical component of this screening system is the use of acrylamide, instead of agar, as the solidifying agent. Our results show that this screening method allows for the identification of Gram-positive and Gram-negative bacteria that possess cellulose and hemicellulose degrading activities from environmental isolates. [ABSTRACT FROM AUTHOR]

The role of telomere attrition in limiting the replicative capacity of cells in culture is well established. In humans, epidemiologic evidence suggests telomere length (TL) in leukocytes is highly variable at birth and inversely related to age. Although calorie restriction (CR) significantly increases life span in most rodent models, its association with TL is unknown. Using linear regression analysis, TLs (as measured by Southern blot analysis) of skeletal muscle (a postmitotic tissue that largely represents early development TL), fat, leukocytes, and skin were tested for effects of age, sex, and diet in 48 control and 23 calorie restriction rhesus monkeys. After controlling for the individual's muscle mean TL, differences between leukocytes muscle and skin muscle were significantly associated with age (p = .002; p = .002) and sex (p = .003; p = .042), but not calorie restriction (p = .884; p = .766). Despite an age-dependent shortening of TL in leukocytes and skin, calorie restriction did not significantly affect TL dynamics in these samples. [ABSTRACT FROM PUBLISHER]

We constrain the linear and quadratic bias parameters from the configuration dependence of the three-point correlation function (3PCF) in both redshift and projected space, utilizing measurements of spectroscopic galaxies in the Sloan Digital Sky Survey Main Galaxy Sample. We show that bright galaxies (Mr < -21.5) are biased tracers of mass, measured at a significance of 4.5σ, in redshift space and 2.5σ in projected space by using a thorough error analysis in the quasi-linear regime (9-27 h-1 Mpc). Measurements on a fainter galaxy sample are consistent with an unbiased model. We demonstrate that a linear bias model appears sufficient to explain the galaxy-mass bias of our samples, although a model using both linear and quadratic terms results in a better fit. In contrast, the bias values obtained from the linear model appear in better agreement with the data by inspection of the relative bias and yield implied values of σ8 that are more consistent with current constraints. We investigate the covariance of the 3PCF, which itself is a measurement of galaxy clustering. We assess the accuracy of our error estimates by comparing results from mock galaxy catalogs to jackknife re-sampling methods. We identify significant differences in the structure of the covariance. However, the impact of these discrepancies appears to be mitigated by an eigenmode analysis that can account for the noisy, unresolved modes. Our joint analysis of both redshift space and projected measurements allows us to identify systematic effects affecting constraints from the 3PCF. [ABSTRACT FROM AUTHOR]

ABSTRACT We use a large N-body simulation to examine the detectability of H i in emission at redshift z≃ 1, and the constraints imposed by current observations on the neutral hydrogen mass function of galaxies at this epoch. We consider three different models for populating dark matter haloes with H i, designed to encompass uncertainties at this redshift. These models are consistent with recent observations of the detection of H i in emission at z≃ 0.8. Whilst detection of 21-cm emission from individual haloes requires extremely long integrations with existing radio interferometers, such as the Giant Meter Radio Telescope (GMRT), we show that the stacked 21-cm signal from a large number of haloes can be easily detected. However, the stacking procedure requires accurate redshifts of galaxies. We show that radio observations of the field of the Deep Extragalactic Evolutionary Probe 2 (DEEP2) spectroscopic galaxy redshift survey should allow detection of the H i mass function at the 5-12σ level in the mass range 1011.4 h−1 M⊙≤ Mhalo≤ 1012.5 h−1 M⊙, with a moderate amount of observation time. Assuming a larger noise level that corresponds to an upper bound for the expected noise for the GMRT, the detection significance for the H i mass function is still at the 1.7-3σ level. We find that optically undetected satellite galaxies enhance the H i emission profile of the parent halo, leading to broader wings as well as a higher peak signal in the stacked profile of a large number of haloes. We show that it is in principle possible to discern the contribution of undetected satellites to the total H i signal, even though cosmic variance limitation make this challenging for some of our models. [ABSTRACT FROM AUTHOR]

Background. Leukocyte telomere length (LTL) is related to diseases of aging, but studies of mortality have been inconsistent. Methods. We evaluated LTL in relation to total mortality and specific cause of death in 1,136 participants of the Cardiovascular Health Study who provided blood samples in 1992–1993 and survived through 1997–1998. LTL was measured by Southern blots of the terminal restriction fragments. Cause of death was classified by a committee of physicians reviewing death certificates, medical records, and informant interviews. Results. A total of 468 (41.2%) deaths occurred over 6.1 years of follow-up in participants with mean age of 73.9 years (SD 4.7), 65.4% female, and 14.8% African American. Although increased age and male gender were associated with shorter LTLs, African Americans had significantly longer LTLs independent of age and sex (p < .001). Adjusted for age, sex, and race, persons with the shortest quartile of LTL were 60% more likely to die during follow-up than those within the longest quartile (hazard ratio: 1.61, 95% confidence interval: 1.22–2.12, p = .001). The association remained after adjustment for cardiovascular disease risk factors. Evaluations of cause of death found LTL to be related to deaths due to an infectious disease etiology (hazard ratio: 2.80, 95% confidence interval: 1.32–5.94, p = .007), whereas a borderline association was found for cardiac deaths (hazard ratio: 1.82, 95% confidence interval: 0.95–3.49, p = .07) in adjusted models. Risk estimates for deaths due to cancer, dementia, and ischemic stroke were not significant. Conclusion. These data weakly corroborate prior findings of associations between LTL and mortality in the elderly. [ABSTRACT FROM PUBLISHER]

Telomeres are engaged in a host of cellular functions, and their length is regulated by multiple genes. Telomere shortening, in the course of somatic cell replication, ultimately leads to replicative senescence. In humans, rare mutations in genes that regulate telomere length have been identified in monogenic diseases such as dyskeratosis congenita and idiopathic pulmonary fibrosis, which are associated with shortened leukocyte telomere length (LTL) and increased risk for aplastic anemia. Shortened LTL is observed in a host of aging-related complex genetic diseases and is associated with diminished survival in the elderly. We report results of a genome-wide association study of LTL in a consortium of four observational studies (n = 3,417 participants with LTL and genome-wide genotyping). SNPs in the regions of the oligonucleotide/oligosaccharide-binding folds containing one gene (OBFC1; rs4387287; P = 3.9 × 10-9) and chemokine (C-X-C motif) receptor 4 gene (CXCR4; rs4452212; P = 2.9 × 10-8) were associated with LTL at a genome-wide significance level (P < 5 × 10-8). We attempted replication of the top SNPs at these loci through de novo genotyping of 1,893 additional individuals and in silico lookup in another observational study (n = 2,876), and we confirmed the association findings for OBFC1 but not CXCR4. In addition, we confirmed the telomerase RNA component (TERC) as a gene associated with LTL (P = 1.1 × 10-5). The identification of OBFC1 through genome-wide association as a locus for interindividual variation in LTL in the general population advances the understanding of telomere biology in humans and may provide insights into aging-related disorders linked to altered LTL dynamics. [ABSTRACT FROM AUTHOR]