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Simple Summary: Chromaphis juglandicola is a serious insect pest of walnut trees. Harmonia axyridis and Coccinella septempunctata are ladybird species that are important predators of C. juglandicola. This study aimed to determine the effects of extraguild prey density and temperature on intraguild predation (IGP) between two ladybird species. The results showed that IGP increased with increasing temperature (15–35 °C) and decreasing extraguild prey density. The number of extraguild prey consumed by C. septempunctata or H. axyridis increased with increasing temperature. These results provide a scientific basis for the rational use of H. axyridis and C. septempunctata to control small walnut aphids. The ladybirds Coccinella septempunctata and Harmonia axyridis are important biocontrol agents for the small walnut aphid Chromaphis juglandicola, a key walnut pest. C. juglandicola outbreaks occur in walnut orchards, and walnut yields have declined. Intraguild predation (IGP) is prevalent among natural enemies that coexist in shared habitats and prey upon the same extraguild prey. We designed laboratory experiments to evaluate the potential for IGP between these two ladybirds at different temperatures and extraguild (EG) prey densities, and the ability of IGP to control EG prey under different conditions. We measured IGP rates in first instar larvae, female adults, and male adults (both starved for 24 h) in the vulnerable immature life stages of two ladybird eggs. Intraguild (IG) prey (H. axyridis eggs or C. septempunctata eggs) and EG prey (C. juglandicola) consumption were tallied after 24 h. Temperature and EG prey density influenced IGP rates, with temperature contributing the most to the variance. IGP increased with increasing temperature (15–35 °C), with both factors interactively influencing the EG prey consumption rate and exhibiting highly significant effects. EG prey consumption increased with temperature and density. This research provides theoretical support for the rational use of H. axyridis and C. septempunctata in the joint biological control of C. juglandicola [ABSTRACT FROM AUTHOR]

As global biodiversity hotspots, wild fruit forests play key ecological functions, providing essential ecosystem services such as carbon storage, soil retention, and water conservation, and support food chains and biodiversity conservation through key species. Climate change, with rising temperatures and altered precipitation patterns, threatens wild fruit forests by reducing the habitats and numbers of key species, potentially turning these ecosystems from carbon sinks to sources and diminishing overall biodiversity and ecosystem services. However, research on how these changes affect important species' habitats and carbon dynamics remains insufficient. To address this, we analysed habitat suitability for three important species (Prunus armeniaca L., Malus sieversii, and Prunus ledebouriana (Schltdl.) Y.Y.Yao with the aim of informing conservation strategies. We used biomod2 to integrate environmental and species data using six methods, encompassing 12 models. We predicted overlapping geographical distributions of three species, analysing their ecological niches and environmental interactions using global datasets to understand their adaptations. This analysis revealed ecological niche shifts and reductions in resource utilisation in both current and future scenarios. Their distribution centres will move poleward under the influence of bioclimatic factors and human activities. In conclusion, protecting P. armeniaca, M. sieversii, and P. ledebouriana is essential for the conservation and overall health of wild fruit forest ecosystems. This study provides new insights into climate change, habitat loss, informing conservation and resilience strategies. [ABSTRACT FROM AUTHOR]

As an important ecosystem, the wild fruit forest in the Tianshan Mountains is one of the origins of many fruit trees in the world. The wild fruit forest in Emin County, Xinjiang, China, was taken as the research area, the spatial and temporal distribution of the wild fruit forest was inverted using random forest and PLUS models, and the 2027 distribution pattern of the wild fruit forest was simulated and predicted. From 2007 to 2013, damage to the wild fruit forest from tourism and overgrazing was very serious, and the area occupied by the wild fruit forest decreased rapidly from 9.59 km2 to 7.66 km2. From 2013 to 2020, suitable temperatures and reasonable tourism management provided strong conditions for the rejuvenation of wild fruit forests. The distance of the center of gravity of the wild fruit forest increased, and the density of distribution of the wild fruit forest in the northwest direction of the study area also increased. It is predicted that the wild fruit forest in the study area will show a steady and slowly increasing trend in places far away from tourist areas and with more complex terrain. It is suggested that non-permanent fences be set up as buffer zones between wild fruit forests, ensuring basic maintenance of wild fruit forests, limiting human disturbance such as overgrazing, and reducing the risk of soil erosion. [ABSTRACT FROM AUTHOR]

Simple Summary: Invasive alien species, such as Carpomya vesuviana Costa (Diptera: Tephritidae), threaten global biodiversity, agriculture, and public health. This study used advanced modelling techniques to predict the potential distribution of C. vesuviana and understand its environmental impacts. The findings suggest that climate change is driving the geographic expansion of C. vesuviana, primarily in Asia, Africa, and Australia. The species is projected to shift poleward by the 2090s, as the species will have shifted to the polar regions under the influence of climate change. Effective management strategies are crucial to mitigate the environmental and health impacts of its expansion. Invasive alien species (IAS) significantly affect global native biodiversity, agriculture, industry, and human health. Carpomya vesuviana Costa, 1854 (Diptera: Tephritidae), a significant global IAS, affects various date species, leading to substantial economic losses and adverse effects on human health and the environment. This study employed biomod2 ensemble models, multivariate environmental similarity surface and most dissimilar variable analyses, and ecological niche dynamics based on environmental and species data to predict the potential distribution of C. vesuviana and explore the environmental variables affecting observed patterns and impacts. Compared to native ranges, ecological niche shifts at invaded sites increased the invasion risk of C. vesuviana globally. The potential geographical distribution was primarily in Asia, Africa, and Australia, with a gradual increase in suitability with time and radiation levels. The potential geographic distribution centre of C. vesuviana is likely to shift poleward between the present and the 2090s. We also show that precipitation is a key factor influencing the likely future distribution of this species. In conclusion, climate change has facilitated the expansion of the geographic range and ecological niche of C. vesuviana, requiring effective transnational management strategies to mitigate its impacts on the natural environment and public health during the Anthropocene. This study aims to assess the potential threat of C. vesuviana to date palms globally through quantitative analytical methods. By modelling and analysing its potential geographic distribution, ecological niche, and environmental similarities, this paper predicts the pest's dispersal potential and possible transfer trends in geographic centres of mass in order to provide prevention and control strategies for the global date palm industry. [ABSTRACT FROM AUTHOR]

The cultivated diploid Brassica oleracea is an important vegetable crop, but the genetic basis of its domestication remains largely unclear in the absence of high-quality reference genomes of wild B. oleracea. Here, we report the first chromosome-level assembly of the wild Brassica oleracea L. W03 genome (total genome size, 630.7 Mb; scaffold N50, 64.6 Mb). Using the newly assembled W03 genome, we constructed a gene-based B. oleracea pangenome and identified 29 744 core genes, 23 306 dispensable genes, and 1896 private genes. We re-sequenced 53 accessions, representing six potential wild B. oleracea progenitor species. The results of the population genomic analysis showed that the wild B. oleracea populations had the highest level of diversity and represents the most closely related population to modern-day horticultural B. oleracea. In addition, the WUSCHEL gene was found to play a decisive role in domestication and to be involved in cauliflower and broccoli curd formation. We also illustrate the loss of disease-resistance genes during selection for domestication. Our results provide new insights into the domestication of B. oleracea and will facilitate the future genetic improvement of Brassica crops. [ABSTRACT FROM AUTHOR]

The globose scale (GS) (Sphaerolecanium prunastri Boyer de Fonscolombe) is a sucking insect that feeds on saps of wild apricot tree (Prunus armeniaca L.) in the Xinjiang Uygur Autonomous Region of northwestern China. It feeds on branches of wild apricot leading to poor growth, leaf yellowing and leaf drop, and sometimes mortality. Since the initial infestation in 2018, all the main valleys of wild apricot trees have been affected, but there is little research on the host's physiological response to GS infestation. We measured the differences in growth between infested and non-infested wild apricots. The results showed that the diameter of shoot branches, the fresh weight, dry weight, length, width, area, and chlorophyll content of leaves, and the longitudinal diameter of fruit, were all significantly less for infested wild apricot trees than for un-infested wild apricot. The branch length of shoots, cross diameter, and weight of fruit also decreased, although the differences were not significant. Overall, GS infestation significantly reduced the growth of wild apricot trees. [ABSTRACT FROM AUTHOR]

Rapeseed (Brassica napus L.) is not only one of the most important oil crops in the world, but it is also an important vegetable crop with a high value nutrients and metabolites. However, rapeseed is often severely damaged by adverse stresses, such as low temperature, pathogen infection and so on. Glyoxalase I (GLYI) and glyoxalase II (GLYII) are two enzymes responsible for the detoxification of a cytotoxic metabolite methylglyoxal (MG) into the nontoxic S-D-lactoylglutathione, which plays crucial roles in stress tolerance in plants. Considering the important roles of glyoxalases, the GLY gene families have been analyzed in higher plans, such as rice, soybean and Chinese cabbage; however, little is known about the presence, distribution, localizations and expression of glyoxalase genes in rapeseed, a young allotetraploid. In this study, a total of 35 BnaGLYI and 30 BnaGLYII genes were identified in the B. napus genome and were clustered into six and eight subfamilies, respectively. The classification, chromosomal distribution, gene structure and conserved motif were identified or predicted. BnaGLYI and BnaGLYII proteins were mainly localized in chloroplast and cytoplasm. By using publicly available RNA-seq data and a quantitative real-time PCR analysis (qRT-PCR), the expression profiling of these genes of different tissues was demonstrated in different developmental stages as well as under stresses. The results indicated that their expression profiles varied among different tissues. Some members are highly expressed in specific tissues, BnaGLYI11 and BnaGLYI27 expressed in flowers and germinating seed. At the same time, the two genes were significantly up-regulated under heat, cold and freezing stresses. Notably, a number of BnaGLY genes showed responses to Plasmodiophora brassicae infection. Overexpression of BnGLYI11 gene in Arabidopsis thaliana seedlings confirmed that this gene conferred freezing tolerance. This study provides insight of the BnaGLYI and BnaGLYII gene families in allotetraploid B. napus and their roles in stress resistance, and important information and gene resources for developing stress resistant vegetable and rapeseed oil. [ABSTRACT FROM AUTHOR]

Walnut dusky-veined aphid Panaphis juglandis (Goeze) and walnut green aphid Chromaphis juglandicola (Kaltenbach) cause economic losses and co-occur on walnut trees, but they have separate niche. Panaphis juglandis feeds on the upper (adaxial) surface of leaves while C. juglandicola feeds on the lower (abaxial) surface. Field surveys and controlled experiments in the field and laboratory were conducted to determine microhabitat selection by P. juglandis and C. juglandicola and the factors associated with this behavior. In the field, the two aphid species colonized a leaflet as follows: P. juglandis only, 16.5%; C. juglandicola only, 44.5%; and both species on same leaflet, 39%. C. juglandicola settled on the abaxial surface earlier than P. juglandis settled on the adaxial surface. P. juglandis showed the highest reproduction rate when they were in the erect position on the adaxial surface. C. juglandicola exhibited the highest reproduction rate when they were inverted and on the abaxial surface. Under a light intensity of 50,000 lux, 60.5% of C. juglandicola remained on the illuminated surface, while P. juglandis did not move from the illuminated surface. Through field and laboratory experiments, we found that P. juglandis preferred to settle on the adaxial surface and C. juglandicola preferred to settle on the abaxial surface. Leaf surface, gravity, and light were three physical factors affecting microhabitat selection by the two aphid species but light intensity was the key factor. This information will help to better understand the habitats of two aphid species, which may be helpful for walnut aphids management strategies such as the usage of insecticides option and spraying. [ABSTRACT FROM AUTHOR]

Rapeseed (Brassica napus L.) is an important oil-bearing cash crop. Effective identification of the rapeseed flowering date is important for yield estimation and disease control. Traditional field measurements of rapeseed flowering are time-consuming, labour-intensive and strongly subjective. In this study, red, green and blue (RGB) images of rapeseed flowering derived from unmanned aerial vehicles (UAVs) were acquired with a total of seventeen available orthomosaic images, covering the whole flowering period for 299 rapeseed varieties. Five different machine learning methods were employed to identify and to extract the flowering areas in each plot. The results suggested that the accuracy of flowering area extraction by the decision tree-based segmentation model (DTSM) was higher than that of naive Bayes, K-nearest neighbours (KNN), random forest (RF) and support vector machine (SVM) in all varieties and flowering dates, with R2 = 0.97 and root mean square error (RMSE) = 0.051 pixels/pixels. Data on the proportion of flowering area and its dynamics showed differences in the time and duration of each flowering date among varieties. All varieties were classified into four clusters based on k-means clustering analysis. There were significant differences in eight phenotypic parameters among the four clusters, especially in the time of maximum flowering ratio and the time entering the early and medium flowering dates. The results from this study could provide a basis for rapeseed breeding based on flowering dynamics. [ABSTRACT FROM AUTHOR]

Evaluating quality traits is important to the selection of elite lines in Brassica napus L. In this study, the quality traits of 488 global collections of B. napus L were evaluated for two consecutive years under central Chinese growing conditions, and a series of phenotypic data was obtained. The measured total glucosinolate content (GLC) and erucic acid content (ERU) values for 95.5% of the accessions were consistent with the original values, and large variations in quality traits were found among these accessions, thus enabling selection for these characters. In general, Chinese accessions tended to have a higher oil content (OC) than foreign accessions, while compared with winter and spring accessions, semi-winter accessions tended to have the highest OC. The mean GLC and ERU of Chinese rapeseed accessions showed gradual downward trends over time, and the genotypic variation in ERU accounted for 98.44% of the total variation, which was the highest among all 10 of the quality traits. Additionally, the heritability for ERU was largest among all 10 of the quality traits. Significant correlations were observed between different traits; OC had significantly (P < 0.01) negative correlation coefficients with oleic acid content, whereas OC had significantly (P < 0.01) positive correlation coefficients with ERU. Principal component analysis revealed that there was no clear boundary among materials of different geographic origins and different ecotypes according to the first two principal coordinates, respectively. This information about variations in quality traits revealed in this study could identify parents for improved rapeseed breeding. [ABSTRACT FROM AUTHOR]

The glyoxalase pathway is composed of glyoxalase I (GLYI) and glyoxalase II (GLYII) and is responsible for the detoxification of a cytotoxic metabolite methylglyoxal (MG) into the nontoxic S-D-lactoylglutathione. The two glyoxalase enzymes play a crucial role in stress tolerance in various plant species. Recently, the GLY gene families have well been analyzed in Arabidopsis, rice and soybean, however, little is known about them in Chinese cabbage (Brassica rapa). Here, 16 BrGLYI and 15 BrGLYII genes were identified in the B. rapa genome, and the BrGLYI and BrGLYII proteins were both clustered into five subfamilies. The classifications, chromosomal distributions, gene duplications, exon–intron structures, localizations, conserved motifs and promoter cis-elements were also predicted and analyzed. In addition, the expression pattern of these genes in different tissues and their response to biotic and abiotic stresses were analyzed using publicly available data and a quantitative real-time PCR analysis (RT-qPCR). The results indicated that the expression profiles of BrGLY genes varied among different tissues. Notably, a number of BrGLY genes showed responses to biotic and abiotic stress treatments, including Plasmodiophora brassicae infection and various heavy metal stresses. Taken together, this study identifies BrGLYI and BrGLYII gene families in B. rapa and offers insight into their roles in plant development and stress resistance, especially in heavy metal stress tolerance and pathogen resistance. [ABSTRACT FROM AUTHOR]

The selection of cultivars with high carotenoid content represents a novel goal in the genetic improvement of oilseed rape. The successful development of an efficient method for the quantification of carotenoids in oilseed rape is a prerequisite for this breeding initiative. In the present study, ultrasound-assisted extraction was combined with a spectrophotometric method to quantify seed carotenoid levels in oilseed rape. The key variables were optimised as follows: the solvent used was a 1 : 1 (v : v) mixture of petroleum ether and acetone, the solid to solvent concentration was 0.08 g/mL, the ultrasound frequency and power were set at 45/100 (kHZ/w), and three extractions of 15 min each were performed. Compared with the conventional solvent extraction method, the time required for extraction using the ultrasound-assisted extraction method was significantly shortened (by 24 times), and the reproducibility was also remarkably improved. These results indicate that ultrasound-assisted spectrophotometric quantification is a rapid, accurate, simple and low cost tool for the screening and selection of rapeseed cultivars with high carotenoid content. [ABSTRACT FROM AUTHOR]

The coexistence of species competing for resources can be facilitated by differential effects of temperature on fitness components. The coexisting cotton aphidsAphis gossypiiGlover andAcyrthosiphon gossypiiMordvilko show seasonal differences in abundance in North-Western China, the former reaching higher field abundances and declining later in the season than the latter. We hypothesized that differences in responses to temperature might be the proximate mechanism driving this difference in population dynamics between the two species. Aphids from laboratory-reared colonies and directly collected from the field in early summer were used to study their development, survival and reproduction under a range of constant temperatures. Life-table parameters suggest thatA. gossypiiperformed better thanAc. gossypiiunder all temperature treatments tested, and the difference tended to be strongest under high temperatures. These observations are consistent with the higher numbers and the later decline ofA. gossypiiin the field compared withAc. gossypii. Our findings help in understanding the seasonal population dynamics of both species, as well as in forecasting pest trends under global warming scenarios. [ABSTRACT FROM AUTHOR]

Brassica napus (rapeseed) is a recent allotetraploid plant and the second most important oilseed crop worldwide. The origin of B. napus and the genetic relationships with its diploid ancestor species remain largely unresolved. Here, chloroplast DNA (cpDNA) from 488 B. napus accessions of global origin, 139 B. rapa accessions and 49 B. oleracea accessions were populationally resequenced using Illumina Solexa sequencing technologies. The intraspecific cpDNA variants and their allelic frequencies were called genomewide and further validated via EcoTILLING analyses of the rpo region. The cpDNA of the current global B. napus population comprises more than 400 variants (SNPs and short InDels) and maintains one predominant haplotype (Bncp1). Whole-genome resequencing of the cpDNA of Bncp1 haplotype eliminated its direct inheritance from any accession of the B. rapa or B. oleracea species. The distribution of the polymorphism information content (PIC) values for each variant demonstrated that B. napus has much lower cpDNA diversity than B. rapa; however, a vast majority of the wild and cultivated B. oleracea specimens appeared to share one same distinct cpDNA haplotype, in contrast to its wild Cgenome relatives. This finding suggests that the cpDNA of the three Brassica species is well differentiated. The predominant B. napus cpDNA haplotype may have originated from uninvestigated relatives or from interactions between cpDNA mutations and natural/artificial selection during speciation and evolution. These exhaustive data on variation in cpDNA would provide fundamental data for research on cpDNA and chloroplasts. [ABSTRACT FROM AUTHOR]

Most studies on the liver toxicity of perfluorinated compounds (PFCs) are focused on healthy individuals, whereas the effects of PFCs on individuals with diabetes mellitus have not been fully characterized. This study aimed to investigate the acute exposure of perfluorononanoic acid (PFNA) on the metabolism of lipid in the liver of streptozotocin-induced diabetic rats. Male diabetic rats were orally dosed by gavage for 7 days with 0, 0.2, 1 and 5 mg/kg/day PFNA. The contents of lipid, the activities of enzyme, the expressions of protein in the liver and the serum parameters were detected. The results indicate that dose-dependent accumulation of triglyceride and total cholesterol occurred in the livers of diabetic rats after PFNA treatment. PFNA increased the activities of lipid synthetase, fatty acid synthease, glucose-6-phosphate dehydrogenase and decreased the activity of lipolytic enzyme, hepatic lipase, in the liver of diabetic rats. The changes of the isocitrate dehydrogenase, malicenzyme and lipoprotein lipase were not obvious. The expressions of protein related to lipid homeostasis, liver X receptor α and apolipoprotein E, were decreased after PFNA administration. Exposure to PFNA also increased the activity of serum alanine aminotransferase in diabetic rats. In conclusion, this study discloses that exposure to PFNA impacts on enzymes and proteins related to liver lipid metabolism and lead to obvious accumulation of lipid in the liver of diabetic rats, which may be responsible for hepatotoxicity of this compound in individuals with diabetes mellitus. [ABSTRACT FROM AUTHOR]

Association mapping can quickly and efficiently dissect complex agronomic traits. Rapeseed is one of the most economically important polyploid oil crops, although its genome sequence is not yet published. In this study, a recently developed 60K Brassica Infinium® SNP array was used to analyse an association panel with 472 accessions. The single-nucleotide polymorphisms (SNPs) of the array were in silico mapped using ‘pseudomolecules’ representative of the genome of rapeseed to establish their hypothetical order and to perform association mapping of seed weight and seed quality. As a result, two significant associations on A8 and C3 of Brassica napus were detected for erucic acid content, and the peak SNPs were found to be only 233 and 128 kb away from the key genes BnaA.FAE1 and BnaC.FAE1. BnaA.FAE1 was also identified to be significantly associated with the oil content. Orthologues of Arabidopsis thaliana HAG1 were identified close to four clusters of SNPs associated with glucosinolate content on A9, C2, C7 and C9. For seed weight, we detected two association signals on A7 and A9, which were consistent with previous studies of quantitative trait loci mapping. The results indicate that our association mapping approach is suitable for fine mapping of the complex traits in rapeseed. [ABSTRACT FROM PUBLISHER]

Key message: Considerable genome variation had been incorporated within rapeseed breeding programs over past decades. Abstract: In past decades, there have been substantial changes in phenotypic properties of rapeseed as a result of extensive breeding effort. Uncovering the underlying patterns of allelic variation in the context of genome organisation would provide knowledge to guide future genetic improvement. We assessed genome-wide genetic changes, including population structure, genetic relatedness, the extent of linkage disequilibrium, nucleotide diversity and genetic differentiation based on F outlier detection, for a panel of 472 Brassica napus inbred accessions using a 60 k Brassica Infinium SNP array. We found genetic diversity varied in different sub-groups. Moreover, the genetic diversity increased from 1950 to 1980 and then remained at a similar level in China and Europe. We also found ~6-10 % genomic regions revealed high F values. Some QTLs previously associated with important agronomic traits overlapped with these regions. Overall, the B. napus C genome was found to have more high F signals than the A genome, and we concluded that the C genome may contribute more valuable alleles to generate elite traits. The results of this study indicate that considerable genome variation had been incorporated within rapeseed breeding programs over past decades. These results also contribute to understanding the impact of rapeseed improvement on available genome variation and the potential for dissecting complex agronomic traits. [ABSTRACT FROM AUTHOR]

A new method for the synthesis of γ-glutamylmethylamide is presented. Glutamic acid γ-methyl ester was used as substrate for γ-glutamylmethylamide synthesis catalyzed by Escherichia coli with γ-glutamyltranspeptidase activity. Reaction conditions were optimized by using 300 mM glutamic acid γ-methyl ester and 3,000 mM methylamine at pH 10 and 40 °C. Bioconversion rate of γ-glutamylmethylamide reached 87 % after 10 h. γ-Glutamyltranspeptidase was reversibly inhibited only when glutamic acid γ-methyl ester was above 300 mM. [ABSTRACT FROM AUTHOR]

It is important to evaluate yield and agronomic traits when selecting for elite lines in Brassica napus L. In this study, 488 global collections of B. napus L. were evaluated for yield and agronomic traits during two consecutive years under growing conditions in central China. A series of phenotypic data for yield and agronomic traits were obtained. Large variations in yield and agronomic traits were found among these accessions, making selection possible for these characters. Chinese accessions, in general, tended to have higher plot yield (POY), higher seed yield per plant (PY), higher thousand-seed weight (TSW), more seeds per silique (SS), and fewer siliques per plant (PS) than foreign accessions. Comparing winter, semi-winter, and spring accessions, semi-winter accessions tended to have the highest POY, highest PY, highest TSW, most SS and fewest PS. Genotypic variation for TSW accounted for 71.23 % of the total variation, and it was the highest for all 12 of the phenotypic traits. Significant correlations were observed between different traits. Principal component analysis (PCA) revealed that significant variation among the traits with the first four principal components could explain 49.8 % of the total variation. Three major groups (winter, spring and semi-winter oilseed rape accessions) could be distinguished when projecting the accessions onto the first two PCAs. The information on variations in yield and agronomic traits detected in this study provided useful parents for rapeseed breeding. Moreover, the phenotypic data on yield and agronomic traits obtained may be used in our subsequent genome-wide association studies for B. napus. [ABSTRACT FROM AUTHOR]

Background: Plant non-specific lipid transfer proteins (nsLtps) are small, basic proteins encoded by multigene families and have reported functions in many physiological processes such as mediating phospholipid transfer, defense reactions against phytopathogens, the adaptation of plants to various environmental conditions, and sexual reproduction. To date, no genome-wide overview of the Brassica rapa nsLtp (BrnsLtp) gene family has been performed. Therefore, as the first step and as a helpful strategy to elucidate the functions of BrnsLtps, a genome-wide study for this gene family is necessary. Methodology/Principal Finding: In this study, a total of 63 putative BrnsLtp genes were identified through a comprehensive in silico analysis of the whole genome of B. rapa. Based on the sequence similarities, these BrnsLtps was grouped into nine types (I, II, III, IV, V, VI, VIII, IX, and XI). There is no type VII nsLtps in B. rapa, and a new type, XI nsLtps, was identified in B. rapa. Furthermore, nine type II AtLtps have no homologous genes in B. rapa. Gene duplication analysis demonstrated that the conserved collinear block of each BrnsLtp is highly identical to those in Arabidopsis and that both segmental duplications and tandem duplications seem to play equal roles in the diversification of this gene family. Expression analysis indicated that 29 out of the 63 BrnsLtps showed specific expression patterns. After careful comparison and analysis, we hypothesize that some of the type I BrnsLtps may function like Arabidopsis pathogenesis-related-14 (PR-14) proteins to protect the plant from phytopathogen attack. Eleven BrnsLtps with inflorescence-specific expression may play important roles in sexual reproduction. Additionally, BrnsLtpI.3 may have functions similar to Arabidopsis LTP1. Conclusions/Significance: The genome-wide identification, bioinformatic analysis and expression analysis of BrnsLtp genes should facilitate research of this gene family and polyploidy evolution and provide new insight towards elucidating their biological functions in plants. [ABSTRACT FROM AUTHOR]

Phytocyanins (PCs) are a plant-specific family of small copper-containing electron transfer proteins. PCs may bind with a single copper atom to function as electron transporters in various biological systems, such as copper trafficking and plant photosynthesis. Evidence indicates that PCs may also be involved in plant developmental processes and stress responses. Many PCs possess arabinogalactan protein-like regions and are therefore termed chimeric arabinogalactan proteins (CAGPs). Previously, 38 and 62 PC genes have been identified in Arabidopsis ( Arabidopsis thaliana) and rice ( Oryza sativa), respectively. The recent release of the Chinese cabbage genome ( B. rapa ssp. Pekinensis line Chiifu-401-42) enabled us to perform a genome-wide identification and analysis. In this study we identified 84 putative PC genes in the B. rapa genome. All of the Brassica rapa phytocyanins ( BrPCs) described here could be divided, based on motif constitution, into the following three main subclasses: 52 early nodulin-like proteins (ENODLs), 16 uclacyanin-like proteins (UCLs), and 11 stellacyanin-like proteins (SCLs). A structural analysis predicted that 71 BrPCs contained N-terminal secretion signals and 45 BrPCs may be glycosylphosphatidylinositol-anchored to the plasma membrane. Glycosylation prediction revealed that 48 BrPCs were CAGPs with putative arabinogalactan glycomodules, and 57 BrPCs had N-glycosylation sites. Additionally, gene duplication analysis demonstrated that almost all of the duplicated BrPC genes shared the same conserved collinear blocks and that segmental duplications play an important role in the diversification of this gene family. Surprisingly, all BrUCL genes were duplicated except for BrUCL16. Expression analyses indicated that BrENODL22/27 and BrSCL8/9 were highly expressed in reproductive organs; BrUCL6/16 was strongly expressed in roots and even more strongly expressed in stems. The genome-wide identification, classification and expression analysis of BrPCs will provide a fundamental basis for the evolution and modification of the gene family after a polyploidy event and enable the functional study of PC genes in a polyploid crop species. [ABSTRACT FROM AUTHOR]

Salinity is an important limiting environmental factor for rapeseed production worldwide. In this study, we assessed the extent and pattern of DNA damages caused by salt stress in rapeseed plants. Amplified fragment length polymorphism (AFLP) analysis revealed dose-related increases in sequence alterations in plantlets exposed to 10–1 000 mmol/L sodium chloride. In addition, individual plantlets exposed to the same salt concentration showed different AFLP and selected region amplified polymorphism banding patterns. These observations suggested that DNA mutation in response to salt stress was random in the genome and the effect was dose-dependant. DNA methylation changes in response to salt stress were also evaluated by methylation sensitive amplified polymorphism (MSAP). Three types of MSAP bands were recovered. Type I bands were observed with both isoschizomers Hpa II and Msp I, while type II and type III bands were observed only with Hpa II and Msp I, respectively. Extensive changes in types of MSAP bands after NaCl treatments were observed, including appearance and disappearance of type I, II and III bands, as well as exchanges between either type I and type II or type I and type III bands. An increase of 0.2–17.6% cytosine methylated CCGG sites were detected in plantlets exposed to 10–200 mmol/L salt compared to the control, and these changes included both de novo methylation and demethylation events. Nine methylation related fragments were also recovered and sequenced, and one sharing a high sequence homology with the ethylene responsive element binding factor was identified. These results demonstrated clear DNA genetic and epigenetic alterations in plantlets as a response to salt stress, and these changes may suggest a mechanism for plants adaptation under salt stress. [ABSTRACT FROM AUTHOR]

DNA methylation is known to play a crucial role in regulating plant development and organ or tissue differentiation. In this study, we assessed the extent and pattern of cytosine methylation during rapeseed (Brassica napus L.) seed germination, and compared the methylation level of various tissues in seedling, using the techniques of methylation-sensitive amplified polymorphism (MSAP) and HPLC separation and quantification of nucleosides. In all, 484 bands, each representing a recognition site cleaved by either or both of the isoschizomers, were amplified by 12 pairs of selective primers in DNA obtained from dry seeds. A total of 76 sites were found to be differentially digested by the isoschizomers, indicating that approximately 15.7% of 5'-CCGG-3' sites in the genome were cytosine methylated. Four classes of patterns were observed in a comparative assay of cytosine methylation in the dry and germinating seeds; a small number of hypermethylation events occurred at 5'-CCGG-3' sites in germinating seeds compared with dry seeds, while many more hypomethylation events were detected after seed germination. Differences in DNA methylation level in various tissues were also detected; radicel was less methylated than hypocotyl and cotyledon. These observations were further confirmed by HPLC analysis. In addition, sequencing of eleven differentially methylated fragments and the subsequent blast search revealed that cytosine methylated 5'-CCGG- 3' sequences were equally distributed between coding and non-coding regions. These results clearly demonstrate the power of MSAP technique for large-scale DNA methylation detection in rapeseed genome, and the complexity of DNA methylation change during seed germination. DNA Hypomethylation going with seed germination appears to be a necessary step toward transcriptional activation in gene expression, and may well contribute to the developmental gene regulation. [ABSTRACT FROM AUTHOR]

The influence of Gd doping at La-site on the electrical transport properties and the colossal magnetoresistance of La0.7− x Gd x Sr0.3MnO3 ( x=0.00, 0.10, 0.15, 0.20, 0.30, 0.40, 0.50, 0.60, and 0.70) is studied. The experimental results indicate that the transport properties exhibit abnormal behavior under high doping condition. For x=0.50, we find that a transition from metal to insulator occurs after the occurrence of insulator-metal transition near T c, which seldom occurs in ABO3 structure. For samples x=0.60 and 0.70, it exhibits insulator behavior far above T c. These abnormal behaviors are attributed to different magnetic background, i.e. the system undergoes a transition from long range ferromagnetic order to the cluster-spin glass state and further to antiferromagnetic order. [ABSTRACT FROM AUTHOR]

Lotus Receptaculum Nelumbinis has been sparking wide research interests due to its rich phenolic compounds. In the present work, ultrasonic-assisted extraction coupled with glycerol was employed to extract phenolic compounds from Receptaculum Nelumbinis and the process was optimized using a response surface methodology with Box-Behnken design (BBD). The optimal conditions for the total phenolic content (TPC) extract were obtained: glycerol concentration of 40%, an extraction temperature of 66 °C, ultrasonic time of 44 min, and the solvent-to-solid ratio of 55 mL/g. Under these optimum extraction conditions, the extraction yield of TPC was 92.84 ± 2.13 mg gallic acid equivalents (GAE) /g. Besides, the antioxidant activities demonstrated the ability of free radical scavenging by four different methods that included 2,2-Diphenyl-1-picrylhydrazyl (DPPH), ferric reducing antioxidant power (FRAP), 2,2′-azinobis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), and reducing activity (RA) were 459.73 ± 7.07, 529.97 ± 7.30, 907.61 ± 20.28, and 983.66 ± 11.80 μmol TE/g, respectively. Six phenolic compounds were identified by ultra-high pressure liquid chromatography combined with triple-time-of-flight mass spectrophotometry (UPLC-Triple-TOF/MS) from the extracts. Meanwhile, Fourier transform infrared (FTIR) was conducted to identify the characteristic functional groups of the extracts and thus reflected the presence of polyphenols and flavonoids. Scanning electron microscopy (SEM) illustrated the microstructure difference of four treatments, which might explain the relationships between antioxidant activities and the structures of phenolic compounds. [ABSTRACT FROM AUTHOR]

Simple Summary: Walnut aphids are major pests of walnut orchards with few commercially available natural enemies except parasitoids. The predatory bug (Orius sauteri) was assessed as a potential biological control agent against two walnut aphid species. This bug has a strong capacity for consuming both aphid species. Biocontrol efficacy of O. sauteri for each species was high (more than 70%), but declined about 20% when both aphid species present on the same leaf together. This might be due to the competition among two species of aphids tested. Three statistical approaches were employed to show that O. sauteri is a promising biocontrol agent. The commercial release of O. sauteri should be considered for the coexisting aphids in walnut orchards to promote economic and environmental benefits. Walnut aphids are major pests of walnut production with few commercially available natural enemies. We conducted laboratory and field experiments to evaluate the potential of Orius sauteri Poppius (Anthocoridae), a predatory bug, as a biological control agent against two walnut aphid species: the dusky-veined aphid (Panaphis juglandis Goeze) and the walnut aphid (Chromaphis juglandicola Kaltenbach). Both species co-occur on walnut trees; P. juglandis is distributed on the upper surface (adaxial) of leaves while C. juglandicola is found on the lower surface (abaxial) of leaves. Based on functional response experiments, O sauteri had a strong capacity for consuming both aphid species. Biocontrol efficacy of O. sauteri for each species in the laboratory and field experiments was high, 77% for P. juglandis and 80% for C. juglandicola, regardless if one or two predators being present. However, biocontrol efficacy declined 15–25% for C. juglandicola and 20–50% for P. juglandis when both aphid species were present on the same leaf. The efficacy of O. sauteri under (semi)-field conditions gave similar findings based on the percentage reduction of aphids and change in population growth rates of aphids. The reduced biocontrol efficacy of the predatory bug against mixed species populations of aphids can be explained by competition between the aphid species and differences in their preferred location on leaves. Our experiments showed that O. sauteri is a promising biocontrol agent, but biocontrol efficacy may decline when both aphid species are present on walnut trees. This should be considered in the commercial release of O. sauteri in walnut orchards to promote economic and environmental benefits of walnuts production. [ABSTRACT FROM AUTHOR]

Background: S-Phenyl-L-cysteine is regarded as having potential applicability as an antiretroviral/protease inhibitor for human immunodeficiency virus (HIV). In the present study, optically active S-phenyl-L-cysteine was prepared in a highly efficient manner from inexpensive bromobenzene using tryptophan synthase through a chemoenzymatic method. Results: The chemoenzymatic method used a four-step reaction sequence. The process started with the reaction of magnesium and bromobenzene, followed by a Grignard reaction, and then hydrolysis and enzymatic synthesis using tryptophan synthase. Through this approach, S-phenyl-L-cysteine was chemoenzymatically synthesized using tryptophan synthase from thiophenol and L-serine as the starting material. Conclusions: High-purity, optically active S-phenyl-L-cysteine was efficiently and inexpensively obtained in a total yield of 81.3% (> 99.9% purity). [ABSTRACT FROM AUTHOR]

Heat stress can induce the cultured microspores into embryogenesis. In this study, whole genome bisulphite sequencing was employed to study global DNA methylation variations after short-term heat shock (STHS) treatments in cultured microspores of Brassica napus cv. Topas. Our results indicated that treatment on cultured Topas microspores at 32 °C for 6 h triggered DNA hypomethylation, particularly in the CG and CHG contexts. And the total number of T32 (Topas 32 °C for 6 h) vs. T0 (Topas 0 h) differentially methylated region-related genes (DRGs) was approximately two-fold higher than that of T18 (Topas 18 °C for 6 h) vs. T0 DRGs, which suggested that 32 °C might be a more intense external stimulus than 18 °C resulting in more changes in the DNA methylation status of cultured microspores. Additionally, 32 °C treatment for 6 h led to increased CHG differential methylations of transposons (DMTs), which were mainly constituted by overlaps between the hypomethylated differentially methylated regions (hypo-DMRs) and transposon elements (TEs). Further analysis demonstrated that the DRGs and their paralogs exhibited differential methylated/demethylated patterns. To summarize, the present study is the first methylome analysis of cultured microspores in response to STHS and may provide valuable information on the roles of DNA methylation in heat response. [ABSTRACT FROM AUTHOR]