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Co-cultivation and effective downstream processing of microalgae and oleaginous yeast are potential strategies to enhance lipid yield. The findings of this work suggest that each cultivable partner should be screened and optimized for the best mutualistic co-cultures. In this case, T. pullulans was found to be the most effective yeast culture with microalgae S. obliquus, C. sorokiniana, and C. protothecoides along with additional cell disruption techniques. Co-cultures of C.protothecoides and T.pullulans had the highest relative lipid yield (RLY) of 68.71%, 59.32%, 55.33%, 53.19%, and 47.3% with sonication, microwave, osmotic shock, freeze-drying, and autoclave, respectively. Sonication was concluded as the best disruption technique with five out of nine co-cultures showing significant lipid enhancement. Even though T. pullulans was the best yeast partner with disruption techniques, co-culture of Y. lipolytica and S.obliquus (RLY 37.11%) produced lipids which was significantly higher than that of their respective monocultures (S. obliquus RLY 23.96%, Y. lipolytica RLY 4.96%) without any disruption process. R. glutinis and Y. lipolytica produced significantly enhanced lipid yield with C.sorokiniana and S. obliquus with sonication (RLY 51.44%) and osmotic shock (RLY 57.70%), respectively. FAME analysis reported that the co-cultures produced higher percentage of total FAME nearly 100% in the case of C. sorokiniana and R. glutinis with high content of saturated fatty acids (SFAs). The presence of biofuel precursors like palmitic acid, linoleic acid, oleic acid, and heptadecanoic acid, confirms their suitability for biofuel production. [ABSTRACT FROM AUTHOR]

Overuse of the fossil fuels to fulfill existing energy requirements has generated various environmental problems like global warming. Emergence of environmental issues due to burning of the fossil fuel resources has provoked researchers to explore alternative sources of fuel. In this scenario, microalgal biofuels could present a promising alternative fuel if produced cost‐effectively without competing for freshwater resources and arable land. Aim of the present study was to grow microalgae by employing lignocellulosic waste for production of lipids. Scenedesmus dimorphus NT8c was chosen based on its ability to tolerate heat, rapid growth, and ease of harvesting by overnight settling. Biochemical composition and growth parameters of microalgae were analyzed when cultivated mixotrophically on sugarcane bagasse hydrolysate, a low‐value agricultural by‐product, that is, currently underutilized. Despite a slight increase in turbidity in the medium, S. dimorphus NT8c cultures raised mixotrophically in 5 g/L sugarcane bagasse hydrolysate displayed significantly higher growth rates compared to photoautotrophic cultivation with an overall biomass productivity of 119.5 mg L d−1, protein contents of 34.82% and fatty acid contents of 15.41%. Thus, microalgae cultivated mixotrophically are capable of photosynthesizing while metabolizing and assimilating organic carbon, significant increases of biomass and lipid productivity can be achieved. However, high supplementation with organic carbon can result in unfavorable levels of turbidity and bacterial growth, reducing microalgal biomass productivity. [ABSTRACT FROM AUTHOR]

Microalgae are the unicellular or multicellular photosynthetic microorganisms that can efficiently fix carbon dioxide (CO2) from various sources such as the environment, industrial flue gas, and some carbonate salts. In the present study, one green microalgal strain and a cyanobacterial consortium were used separately for the sequestration of CO2 at different pHs (7–11), at different initial concentrations of CO2 (5–20%), and at various inoculum sizes (5–12.5%). The maximum sequestration of CO2 was found to be 74.37 ± 0.49% and 71.12 ± 0.05% at 5% and 15% CO2 for green algae and cyanobacterial consortium. The biomass generated after sequestration of CO2 was utilized for the synthesis of biomolecules. [ABSTRACT FROM AUTHOR]

The purpose of this study was to investigate the diversity of cultivable nitrogen fixing, phosphate solubilising and total bacteria originated from 580 rhizospheric acidic soils samples of tea plants grown at 62 locations. Based on FAME profiles of over 1428 rhizoplane bacteria, 63 bacterial genera were identified with a similarity index > 0.3, but 56.4% of the identified isolates belonged to six genera: Bacillus (37.02%), Pseudomonas (12.67%), Stenotrophomonas (5.71%), Paenibacillus (6.58%), Arthrobacter (4.35%) and Brevibacillus (3.98%). Most of the total, N2-fixing and P-solubilizing bacteria isolated were Gram positive (59.9, 58.8 and 56.3%) and Gram negative constituted only 40.1, 41.2 and 43.7%. Among different groups, Firmicutes, Gammaproteobacteria and Actinobacteria comprised the largest groups contributing to about 50.3 and 46.6%, 30.8 and 32.5%, and 8.3 and 9.6% of the total N2-fixing and P-solubilizing isolates, respectively. B. cereus, P. fluorescens, B. megaterium, S. maltophilia, P. putida, B. licheniformis, B. pumilus, B. subtilis and P. polymyxa were the most frequent N2-fixing and P-solubilizing species in the acidic tea rhizosohere soils. In these studies were evaluated to represent the dominant culturable diversity of diazotrophs and phosphobacteria, and thus potentially beneficial to the growth and survival of tea plants in that specific acidic ecosystem of eastern Black Sea region. [ABSTRACT FROM AUTHOR]

Solibacillus silvestris AM1 was the first strain from the genus to be reported for the production of a functional amyloid and its potential use as a surface active agent, a thermostable glycoprotein amyloid bioemulsifier BE‐AM1 capable of influencing environment and biofilm formation. Phylogenetic analysis based on 16S rRNA gene, molecular characterization studies on the basis of DNA‐DNA hybridization and chemotaxonomic fatty acid methyl ester (FAME) analysis showed that S. silvestris AM1 as a strain matches with the type strain S. silvestris HR3‐23. But strain AM1 differs from the type strain HR3‐23 in carbon substrate utilization studies along with amyloid bioemulsifier production ability with potential industrial and environmental applications. S. silvestris AM1 exhibited bioemulsifier production at wide range of factors like pH and NaCl concentrations, while temperature influenced the bioemulsifier production indirectly (since it affected the growth). Bioemulsifier production was observed even at oligotrophic conditions (0.5 mg ml−1) seen usually in its native environment. In this study, we have characterized the amyloid producing S. silvestris AM1 taxonomically and also analyzed 16S rDNA of 103 sequences of Solibacillus sp. available, which indicated the possibility of new species in this genus and can be studied for industrially and environmentally important biomolecules. [ABSTRACT FROM AUTHOR]

The eftA gene in Bacillus subtilis has been suggested to be involved in the oxidation/reduction reactions during fatty acid metabolism. Interestingly etfA deletion in B. subtilis results in impairment in CaCO3 precipitation on the biofilm. Comparisons between the wild type B. subtilis 168 and its etfA mutant during in vitro CaCO3 crystal precipitation (calcite) revealed changes in phospholipids membrane composition with accumulation of up to 10% of anteiso-C17:0 and 11% iso-C17:0 long fatty acids. Ca2+ nucleation sites such as dipicolinic acid and teichoic acids seem to contribute to the CaCO3 precipitation. etfA mutant strain showed up to 40% less dipicolinic acid accumulation compared with B. subtilis 168, while a B. subtilis mutant impaired in teichoic acids synthesis was unable to precipitate CaCO3. In addition, B. subtilis etfA mutant exhibited acidity production leading to atypical flagella formation and inducing extensive lateral growth on the biofilm when grown on 1.4% agar. From the ecological point of view, this study shows a number of physiological aspects that are involved in CaCO3 organomineralization on biofilms. [ABSTRACT FROM AUTHOR]

The first major challenge for the bioremediation field is to select the most promising types of biomass. Hence, the objective of this study was to isolate and identify a novel species which has the potential to remediate tin in freshwaters. For this reason, a bacterium designated as Sn11, with 59 μg ml−1 maximum tolerable concentration of tin was isolated selectively from the freshwater samples collected along the river Kırıkkale-Kızılırmak, Turkey. Identification of the isolate was done using biochemical tests, fatty acid methyl ester analysis, and 16S rRNA sequencing. Fatty acids produced by the isolate investigated were assumed as typical for the genus Pantoea. Pantoea were highly homogeneous by dominant C16:0 and C16:1 cis 9 fatty acids. 16S rRNA sequence analysis also confirmed that the isolate Sn11 had 98% homology with Pantoea agglomerans. The complete sorption of 59 μg ml−1 tin by P. agglomerans was recorded at about 20 h incubation. Due to higher affinity toward tin sorption, P. agglomerans can be an important isolate for the natural attenuation of tin toxicity in contaminated freshwaters. [ABSTRACT FROM AUTHOR]

Frankia strains, isolated from Hippöphae salicifolia D. Don, were utilized to examine the utility of lipid amendments in the strains' strategic survival against salinity. Frankia strains are known to withstand severe temperature fluctuations (−20 °C to +30 °C), nitrogen deprivation and low soil water content. It was interesting to note that these strains were also able to tolerate a considerable range of salinity. Strains were subjected to 250 mM (500 mM for HsIi10) and 750 mM NaCl treatment, which were the critical and inhibitory NaCl concentrations, respectively, for the experimental strains. Their lipid profiles showed dynamic modifications in saline environment; 16-18 carbon chain fatty acids were of predominant occurrence in the lipid membrane. In the critical NaCl environment, there was an increase in fatty acid unsaturation (measured in terms of MUFA/PUFA ratio), which preserved normal membrane fluidity. Conversely, at the inhibitory salinity level, increased fatty acid saturation made the membrane highly rigid and susceptible to breakage and electrolyte loss. The differential capability of fatty acid desaturation could be a major factor in variation of salt sensitivity/tolerance patterns among these strains. Also, management of the lipid profile in response to salinity was found to be a strain-specific character. [ABSTRACT FROM AUTHOR]

Biofuels derived from non-crop sources, such as microalgae, offer their own advantages and limitations. Despite high growth rates and lipid accumulation, microalgae cultivation still requires more energy than it produces. Furthermore, invading organisms can lower efficiency of algae production. Simple environmental changes might be able to increase algae productivity while minimizing undesired organisms like competitive algae or predatory algae grazers. Microalgae are susceptible to pH changes. In many production systems, pH is kept below 8 by CO addition. Here, we uncouple the effects of pH and CO input, by using chemical pH buffers and investigate how pH influences Nannochloropsis salina growth and lipid accumulation as well as invading organisms. We used a wide range of pH levels (5, 6, 7, 8, 9, and 10). N. salina showed highest growth rates at pH 8 and 9 (0.19 ± 0.008 and 0.19 ± 0.011, respectively; mean ± SD). Maximum cell densities in these treatments were reached around 21 days into the experiment (95.6 × 10 ± 9 × 10 cells mL for pH 8 and 92.8 × 10 ± 24 × 10 cells mL for pH 9). Lipid accumulation of unbuffered controls were 21.8 ± 5.8 % fatty acid methyl esters content by mass, and we were unable to trigger additional significant lipid accumulation by manipulating pH levels at the beginning of stationary phase. Ciliates (grazing predators) occurred in significant higher densities at pH 6 (56.9 ± 39.6 × 10 organisms mL) than higher pH treatments (0.1-6.8 × 10 organisms mL). Furthermore, the addition of buffers themselves seemed to negatively impact diatoms (algal competitors). They were more abundant in an unbuffered control (12.7 ± 5.1 × 10 organisms mL) than any of the pH treatments (3.6-4.7 × 10 organisms mL). In general, pH values of 8 to 9 might be most conducive to increasing algae production and minimizing invading organisms. CO addition seems more valuable to algae as an inorganic carbon source and not as an essential mechanism to reduce pH. [ABSTRACT FROM AUTHOR]

Evaluation of biofuel production cropping systems should address not only energy yields but also the impacts on soil attributes. In this study, forage sorghum ( Sorghum bicolor L. Moench) cropping systems were initiated on a low organic matter soil (<0.9 %) with a history of intensively tilled low-input cotton production in the semiarid Southern High Plains of the U.S. Sorghum cropping systems were evaluated in a split-plot design with sorghum cultivar as the main plot and the combination of irrigation level (non-irrigated and deficit irrigated) and aboveground biomass removal rate (50 % and 100 %) as the split plot. The sorghum cultivars used varied in yield potential and lignin content, which are important features for feedstock-producing crops. Within 1 year, the transition from long-term cotton cropping systems to sorghum biofuel cropping systems resulted in increased soil microbial biomass C (16 %) and N (17 %) and shifts in the microbial community composition as indicated by differences in fatty acid methyl ester (FAME) profiles. Additionally, enzyme activities targeting C, N, P and S cycles increased 15-75 % (depending on the enzyme) after two growing seasons. Increased enzyme activities (16-19 %) and differences in FAME profiles were seen due to irrigation regardless of aboveground biomass removal rate. Biomass removal rate and the cultivar type had little effect on the soil microbial properties during the time frame of this study. Early results from this study suggest improvements in soil quality and the sustainability of sorghum biofuel cropping for low organic matter agricultural soils. [ABSTRACT FROM AUTHOR]

A bacterial leaf blight of Christ's thorn plants (Paliurus spina-christi) observed in the Kurdistan province of Iran is described for the first time. Main symptoms of the disease are foliar water-soaked, irregular spots with yellow halo, 5-8 mm in diameter, which eventually turn brown. Due to it is relatively recent detection in Iran, very little is known about the pathogen. Yellow, non-mucoid colonies consistently isolated from leaf lesions were produced by a Gram-negative, catalase positive and oxidase negative bacterium, 15 isolates of which showed more than 90% similarity. Comparative 16S rDNA gene sequence analysis positioned this bacterium in the genus Sphingomonas with the highest sequence similarity (97%) to Sphingomonas melonis. Chemotaxonomically, fatty acid methyl ester analysis revealed that the bacterial isolates contained C16:0 (9%), C18:1 ω 9 (51%) as predominant fatty acids and C14:0 2OH (25%) as a major 2-hydroxy fatty acid, confirming their belonging to the genus Sphingomonas. [ABSTRACT FROM AUTHOR]

During screening for poly-β-hydroxybutyrate (PHB) producing bacteria from distillery effluent sample, six out of 30 isolates comprising of three strains of Alcaligenes sp., two strains of Bacillus sp., and one strain of Pseudomonas sp. were found to accumulate varying levels of intracellular PHB. Amongst the various isolates, Alcaligenes sp. RZS4 was found as the potent PHB-producing organism, accumulating higher amounts of PHB. PHB productivity was further enhanced in the presence of oxygen, nitrogen-limiting conditions, and cloning of PHB synthesizing genes of Alcaligenes sp. RZS 4 into Escherichia coli. A twofold increase in PHB yield was obtained from recombinant E. coli vis-à-vis Alcaligenes sp.; the recombinant E. coli accumulated more PHB in NDMM, produced good amount of PHB in a single-stage cultivation process under both nutrient-rich and nutrient-deficient conditions. Extraction of PHB with acetone-alcohol (1:1) was found as suitable method for optimum extraction of PHB as this mixture selectively extracted PHB without affecting the non-PHB cell mass. PHB extract from recombinant E. coli showed the presence of C-H, =O stretching, =C-H deformation, =C-H, =CH, and =C-O functional groups characteristic of PHB. [ABSTRACT FROM AUTHOR]

Indicators of soil quality, such as microbial biomass C and N (MBC, MBN) and enzyme activities (EAs), involved in C, P, N, and S cycling, as affected by dryland cropping systems under conventional (ct) and no tillage (nt) practices were evaluated for 5 years. The soil is sandy loam with an average of 16.4% clay, 67.6% sand, and 0.65 g kg OM at 0-10 cm. The crops evaluated were rotations of grain sorghum ( Sorghum bicolor L.) or forage sorghum (also called haygrazer), cotton ( Gossypium hirsutum), and winter rye ( Secale cereale): grain sorghum-cotton (Sr-Ct), cotton-winter rye-sorghum (Ct-Rye-Sr), and forage sorghum-winter rye (Sr-Rye). The tillage treatments did not affect soil MB and EAs of C cycling (i.e., β-glucosidase, β-glucosaminidase, α-galactosidase), P cycling (alkaline phosphatase, phosphodiesterase), and S cycling (arylsulfatase)-except for separation due to tillage for Sr-Rye and Ct-Rye-Sr observed in PCA plots when all EAs were evaluated together. After 3 years, rotations with a winter cover crop history (Ct-Rye-Sr and Sr-Rye) enhanced soil MBN (up to 63%) and EAs (21-37%) compared to Sr-Ct. After 5 years, Sr-Ct and Ct-Rye-Sr showed similar soil MBC, MBN, EAs, total carbon (TC), and organic carbon (OC). A comparison of Sr-Ct plots with nearby continuous cotton (Ct-Ct) research plots in the same soil revealed that it took 5 years to detect higher TC (12%), MBC (38%), and EAs (32-36%, depending on the enzyme) under Sr-Ct. The significant improvements in MB and EAs found, as affected by dryland cropping systems with a history of winter cover crops and/or higher biomass return crops than cotton, can represent changes in soil OM, nutrient cycling, and C sequestration for sandy soils in the semiarid Texas High Plains region. It is significant that these soil changes occurred despite summer crop failure (2003 and 2006) and lack of winter cover crops (2006) due to lack of precipitation in certain years. [ABSTRACT FROM AUTHOR]

Evaluation of the soil rhizosphere has been limited by the lack of robust assessments that can explore the vast complex structure and diversity of soil microbial communities. Our objective was to combine fatty acid methyl ester (FAME) and pyrosequencing techniques to evaluate soil microbial community structure and diversity. In addition, we evaluated biogeochemical functionality of the microbial communities via enzymatic activities of nutrient cycling. Samples were taken from a silt loam at 0-10 and 10-20 cm in an organic farm under lettuce (Lactuca sativa), potato (Solanum tuberosum), onion (Allium cepa L), broccoli (Brassica oleracea var. botrytis) and Tall fescue pasture grass (Festuca arundinacea). Several FAMEs (a15:0, i15:0, i15:1, i16:0, a17:0, i17:0, 10Me17:0, cy17:0, 16:1ω5c and 18:1ω9c) varied among the crop rhizospheres. FAME profiles of the soil microbial community under pasture showed a higher fungal:bacterial ratio compared to the soil under lettuce, potato, onion, and broccoli. Soil under potato showed higher sum of fungal FAME indicators compared to broccoli, onion and lettuce. Microbial biomass C and enzyme activities associated with pasture and potato were higher than the other rhizospheres. The lowest soil microbial biomass C and enzyme activities were found under onion. Pyrosequencing revealed significant differences regarding the maximum operational taxonomic units (OTU) at 3% dissimilarity level (roughly corresponding to the bacterial species level) at 0-10 cm (581.7-770.0) compared to 10-20 cm (563.3-727.7) soil depths. The lowest OTUs detected at 0-10 cm were under broccoli (581.7); whereas the lowest OTUs found at 10-20 cm were under potato (563.3). The predominant phyla (85%) in this soil at both depths were Bacteroidetes (i.e., Flavobacteria, Sphingobacteria), and Proteobacteria. Flavobacteriaceae and Xanthomonadaceae were predominant under broccoli. Rhizobiaceae, Hyphomicrobiaceae, and Acidobacteriaceae were more abundant under pasture compared to the cultivated soils under broccoli, potato, onion and lettuce. This study found significant differences in microbial community structure and diversity, and enzyme activities of nutrient cycling in this organic farming system under different rhizospheres, which can have implications in soil health and metabolic functioning, and the yield and nutritional value of each crop. [ABSTRACT FROM AUTHOR]

The purpose of this study was to investigate the diversity of cultivable phosphate solubilising (PSB) and total bacteria originated from 384 rhizospheric acidic soils samples of tea plants grown at 32 locations. Over 900 rhizoplane bacteria were randomly selected from agar-solidified trypticase soy broth, and identified using fatty acid methyl ester (FAME) profiles. Based on FAME profiles, 53 bacterial genera were identified with a similarity index >0.3, but 60.3% of the identified isolates belonged to five genera: Bacillus (34.6%), Pseudomonas (8.9%), Stenotrophomonas (6.1%), Paenibacillus (5.9%) and Arthrobacter (4.8%). The bacilli group comprised many different species, with the most abundant being B. cereus, B. megaterium and B. sphaericus. The main identified Pseudomonads included P. fluorescens, P. putida, and P. alcaligenes. About 30.4% of the bacterial isolates could not be classified to genus since their similarity indices were <0.3 indicating no close matches. Most of the total and P-solubilizing bacteria isolated were Gram positive (61.3 and 52.3%), and Gram negative constituted only 38.7 and 47.7%. Out of the 214 PSB from a pool of 506 bacterial isolates recovered on the selective media from the rhizosphere of tea, 74 of them were characterized by carbon sources using BIOLOGM GN2 and GP2 plates. Bacillus, Pseudomonas, Paenibacillus and Stenotrophomonas genera were the most prominent P-solubilizing groups in the rhizosphere and soil populations analyzed. B. cereus, P. fluorescens, S. maltophilia, B. megaterium, P. putida, B. sphaericus and Paenibacillus polymyxa were the most frequent P-solubilizing species in the acidic tea rhizosohere soils. Selected Gram-positive PSB appeared to favour carbohydrates, and Gram-negative bacteria appeared to favour carboxylic acids, amino acids and carbohydrates as carbon sources. Selected phosphate solubilizing acid tolerant strains showed high variability in utilizing various carbon sources. [ABSTRACT FROM AUTHOR]

This study evaluated microbial communities of soil (0-10 cm) as affected by dryland cropping systems under different tillage practices after 5 years. The soil type was an Olton sandy loam with an average of 16.4% clay, 67.6% sand and 0.65 g kg-1 of organic matter (OM). The cropping systems evaluated were grain sorghum (Sorghum bicolor L.)-cotton (Gossypium hirsutum) (Srg-Ct), cotton-winter rye (Secale cereale)-grain sorghum (Ct-Rye-Srg), and a rotation of forage (f) sorghum (Sorghum bicolor L. and Sorghum sudanense) with winter rye (Srf-Rye), which were under no-tillage (nt) and conventional tillage (ct) practices. Soil microbial communities under cotton based cropping systems (Srg-Ct and Ct-Rye-Srg) showed lower fungal:bacterial ratios compared to the soil under Srf-Rye. Soil under Srf-Rye showed higher population densities of Bacteroidetes and Proteobacteria while lower Actinobacteria compared to Srg-Ct and Ct-Rye-Srg. Chloroflexi, Gemmatimonadetes and Verrucomicrobiae were higher in tilled soil compared to the no-tilled plots. Regardless the limited irrigation available to sustain agricultural production within these dryland cropping systems, this study demonstrated that differences in microbial communities are more affected by crop rotation than tillage management history. Although soil fungal diversity was not analyzed in this study, pyrosequencing suggests that tillage practices can affect bacterial phyla distribution in this sandy soil. [ABSTRACT FROM AUTHOR]

The use of fatty acid methyl esters (FAME) as biomarkers to identify groups of microorganisms was studied. A database was constructed using previously published results that identify FAME biomarkers for aerobic, anaerobic and facultatively aerobic bacteria. FAME profiles obtained from pure cultures were utilized to confirm the predicted presence of biomarkers. Principal component analysis demonstrated that the FAME profiles can be used to determine the incidence of these bacterial groups. The presence of aerobic, anaerobic and facultatively aerobic bacteria in the communities, in four bioreactors being used to treat different wastewaters, was investigated by applying FAME biomarkers. [ABSTRACT FROM AUTHOR]

The existence of Pseudomonas aurantiaca DNA-bound fatty acids and lipids is presented in this work. The isolation of DNA was carried out by two different procedures, namely, phenol and detergent-based phenol isolation in order to prove the presence of DNA-bound lipids. The lipid content of DNA is expressed in terms of fatty acid profile. A high level of 16:0, 18:0 and 18:1 is characteristic for tightly bound DNA lipids. On the other hand, the fatty acids such as 14:1, iso14:0 and iso16:0 are found in trace amounts only in DNA lipid fraction, but these fatty acids are not found in the whole-cell lipids. Absolutely no 3-hydroxy fatty acids were found in DNA lipids. However, both C16 and C18 species represent the main fatty acids of whole-cell and DNA-bound lipids. The presence of DNA-bound lipids even under tough treatment of DNA allows to conclude that these lipids represent a special pool among cellular lipids. [ABSTRACT FROM AUTHOR]