9 results on '"Eshaghi Malekshah, Rahime"'
Search Results
2. Insights from molecular dynamics and DFT calculations into the interaction of 1,4-benzodiazepines with 2-hydroxypropyl-βCD in a theoretical study.
- Author
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Ganjali Koli, Mokhtar, Eshaghi Malekshah, Rahime, and Hajiabadi, Hossein
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MONTE Carlo method ,MOLECULAR dynamics ,BENZODIAZEPINES ,BINDING energy ,DRUG carriers ,HYDROGEN bonding ,CYCLODEXTRINS - Abstract
This study delves into the interaction between benzodiazepine (BZD) drugs and 2-hydroxypropyl-β-cyclodextrin (2HPβCD), a cyclodextrin (CD) known to improve drug delivery and enhance therapeutic outcomes. We find that the 2HPβCD's atoms become more rigid in the presence of chlordiazepoxide (CDP), clonazepam (CLZ), and diazepam (DZM), whereas they become more flexible in the presence of nordazepam (NDM) and nitrazepam (NZP). We also investigated the structure of 2HPβCD and found that loading these drugs increases both the area and volume of the 2HPβCD cavity, making it more suitable for drug delivery. Moreover, this research found that all drugs exhibited negative values for the binding free energy, indicating thermodynamic favorability and improved solubility. The binding free energy order of the BZDs was consistent in both molecular dynamics and Monte Carlo methods, with CDP and DZM having the highest affinity for binding. We also analyzed the contribution of different interaction energies in binding between the carrier and the drugs and found that Van der Waals energy is the primary component. Our results indicate that the number of hydrogen bonds between 2HPβCD/water slightly decreases in the presence of BZDs, but the hydrogen bond's quality remains constant. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
3. Phytic acid-modified graphene/cobalt oxide nanocomposites: synthesis, characterization, theoretical studies, antiproliferative properties, and catalytic activities.
- Author
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Gholivand, Khodayar, Sabaghian, Marzie, Babaei, Azam, Eshaghi Malekshah, Rahime, Sadeghi-Mohammadi, Sanam, and Naderi-Manesh, Hossein
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DNA topoisomerase I ,COBALT oxides ,NANOCOMPOSITE materials ,CATALYTIC activity ,PHYTIC acid ,BCL-2 proteins ,GRAPHENE oxide ,POLYMERIC nanocomposites - Abstract
Graphene oxide (GO) nanocomposites have attracted much attention in biomedical and catalytic fields due to their outstanding water dispersibility, cell permeability, high mobility of charge carriers, etc. This article reports the successful synthesis of GO–Co
3 O4 and phytic acid (PA)-modified GO–Co3 O4 (GO–Co3 O4 –PA) nanocomposites by a facile hydrothermal method and studies of their antiproliferative properties. Various analyses were performed to characterize the synthesized nanocomposites. XRD revealed the characteristic crystallinity of GO–Co3 O4 and GO–Co3 O4 –PA. FT-IR spectroscopy identified the different functional groups of nanocomposites. FE-SEM, AFM, EDX, and DLS analyses of GO–Co3 O4 –PA demonstrated multigonal particles with an average size of 837 nm on the basal planes of GO with signatures of Co and P. The zeta potential was −49.9 mV for GO–Co3 O4 –PA, which showed the moderate stability of nanocomposites. The Raman spectra of GO–Co3 O4 and GO–Co3 O4 –PA nanocomposites indicated an increase in the surface defect density of GO due to the adsorption of Co3 O4 and PA on the surface of GO. The use of nanocomposites for targeted breast cancer therapy was evaluated via an MTT assay. GO–Co3 O4 –PA showed considerable cytotoxicity with an IC50 value of 12.94 μg mL−1 towards the breast cancer cell line (MCF-7), which was five times lower than that of GO–Co3 O4 (64.36 μg mL−1 ). As an anticancer agent, PA enhances the interaction of MCF-7 cell lines with nanocomposites and leads to higher cytotoxicity. MTT cytotoxicity, Annexin V/PI double staining, and intracellular reactive oxygen species (ROS) assays were performed. The GO–Co3 O4 –PA nanocomposite is a promising candidate for breast cancer therapy. Quantum mechanical calculations based on the DFT-D correction and PA adsorption on GO and GO–Co3 O4 (1 0 0) in the presence of water were done in the adsorption locator module. Free energy calculations showed that adsorption is a spontaneous and more favorable process. Molecular docking studies were conducted to investigate the interaction of compounds on human topoisomerase IIα bound to DNA (4fm9) and Bcl-2 protein. The results indicated that GO–Co3 O4 –PA could properly dock into more amino acids with high negative energy scores and confirmed the MTT data. Moreover, GO–Co3 O4 –PA nanocomposites exhibited excellent catalytic ability towards the Biginelli reaction and showed significant advantages including excellent yields, mild reaction conditions, and short reaction times. [ABSTRACT FROM AUTHOR]- Published
- 2023
- Full Text
- View/download PDF
4. Fabrication and examination of polyorganophosphazene/polycaprolactone-based scaffold with degradation, in vitro and in vivo behaviors suitable for tissue engineering applications.
- Author
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Gholivand, Khodayar, Mohammadpour, Mahnaz, Alavinasab Ardebili, Seyed Alireza, Eshaghi Malekshah, Rahime, and Samadian, Hadi
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TISSUE scaffolds ,POLYCAPROLACTONE ,TISSUE engineering ,MOLECULAR shapes ,POLYMERIC membranes ,PROPYLENE glycols ,CELL adhesion - Abstract
The present study aimed to synthesis a proper scaffold consisting of hydroxylated polyphosphazene and polycaprolactone (PCL), focusing on its potential use in tissue engineering applications. The first grafting of PCL to poly(propylene glycol)phosphazene (PPGP) was performed via ROP of ε-caprolactone, whereas PPGP act as a multisite macroinitiator. The prepared poly(propylene glycol phosphazene)-graft-polycaprolactone (PPGP-g-PCL) were evaluated by essential tests, including NMR, FTIR, FESEM-EDS, TGA, DSC and contact angle measurement. The quantum calculations were performed to investigate molecular geometry and its energy, and HOMO and LUMO of PPGP-g-PCL in Materials Studio2017. MD simulations were applied to describe the interaction of the polymer on phospholipid membrane (POPC128b) in Material Studio2017. The C2C12 and L929 cells were used to probe the cell–surface interactions on synthetic polymers surfaces. Cells adhesion and proliferation onto scaffolds were evaluated using FESEM and MTT assay. In vitro analysis indicated enhanced cell adhesion, high proliferation rate, and excellent viability on scaffolds for both cell types. The polymer was further tested via intraperitoneal implantation in mice that showed no evidence of adverse inflammation and necrosis at the site of the scaffold implantation; in return, osteogenesis, new-formed bone and in vivo degradation of the scaffold were observed. Herein, in vitro and in vivo assessments confirm PPGP-g-PCL, as an appropriate scaffold for tissue engineering applications. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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5. Solution-phase polyol synthesis and coadsorption MD calculations from faceted platinum nanoparticles: NOVEL NPs‒polymer morphology controlling.
- Author
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Akbarzadeh, Ali Reza, Mesgarzadeh, Iraj, and Eshaghi Malekshah, Rahime
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In this study, the polyol reduction process is applied to synthesize the platinum nanoparticles using polyethylene glycol (PEG) as a complexing/reducing agent and polyvinylpyrrolidone (PVP) as a stabilizer. The platinum nanoparticles were characterized by TEM, XRD, EDX, FT-IR, and UV–Vis spectroscopy indicating the formation of polydisperse faceted Pt nanoparticles. By binding PVP to (200) facets of platinum nanoparticles compared with (111) facets, it played a vital role in controlling the morphology of platinum nanocrystallines. Meanwhile, the (111) surfaces were used for reactions. Due to their nanocrystalline nature, the so-obtained platinum nanoparticles displayed different faceted shapes, including faceted and quasi-spherical morphologies. The molecular dynamics simulations were applied for coadsorption of PEG and PVP on PtCl
4 (111), and K2 PtCl6 (111) surfaces in Material Studio 2017 using the Forcite module. The results showed that coadsorption of PEG and PVP on PtCl4 (111) was higher than coadsorption of PEG and PVP on K2 PtCl6 (111). [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
6. Preparation and examination of a scaffold based on hydroxylated polyphosphazene for tissue engineering: In vitro and in vivo studies.
- Author
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Gholivand, Khodayar, Alavinasab Ardebili, Seyed Alireza, Mohammadpour, Mahnaz, Eshaghi Malekshah, Rahime, Hasannia, Sadegh, and Onagh, Bahman
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TISSUE scaffolds ,TISSUE engineering ,CROSSLINKED polymers ,FOURIER transform infrared spectroscopy ,IN vivo studies ,BONE substitutes - Abstract
In the current study, we introduced a new water‐soluble polyphosphazene containing hydroxyl groups, poly(propyleneglycol)phosphazene (PPGP). The PPGP is converted to PPGP‐TiO2 cross‐linked polymer via hydrothermal reaction with Ti(OBu)4. The properties of the obtained polymers were assessed by 1H‐NMR, 31P‐NMR, Fourier transform infrared spectroscopy (FTIR) and X‐ray diffraction (XRD) spectroscopic methods, thermal techniques (DSC‐TGA), FESEM–EDX investigations, cyclic voltammetry (CV) and Zeta potential measurements. In order to predict PPGP‐TiO2 cross‐linked polymer structure and obtain HOMO–LUMO maps and COMSO sigma profile, quantum calculations were used by DMol3 module based on Dispersion‐corrected density functional theory (DFT‐D) in Materials Studio Software2017. As a common bone substitute material, hydroxyapatite (HAp) was prepared using a modified method and closely characterized by appropriate analysis. The PPGP cytotoxicity was examined using C2C12 and L929 cell lines and Escherichia coli. The C2C12 differentiation using PPGP (as media supplement) was quantified by alkaline phosphatase activity assay. The biocompatibility of PPGP‐TiO2 was compared with HAp using mentioned cell lines and acute inflammatory testing. The results demonstrated that cell proliferation and osteoblastic differentiation increased in presence of PPGP. Both in vitro and in vivo evidence indicated that the novel scaffold had significant viability, exhibiting notable adaptability with its surrounding living tissue. [ABSTRACT FROM AUTHOR]
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- 2022
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7. Synthesis and toxicity assessment of Fe3O4 NPs grafted by ∼ NH2-Schiff base as anticancer drug: modeling and proposed molecular mechanism through docking and molecular dynamic simulation.
- Author
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Eshaghi Malekshah, Rahime, Fahimirad, Bahareh, Aallaei, Mohammadreza, and Khaleghian, Ali
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MOLECULAR docking ,DYNAMIC simulation ,TOLUENE diisocyanate ,FIELD emission electron microscopy ,IRON oxide nanoparticles ,MOLECULAR models ,MYELOID leukemia - Abstract
Superparamagnetic iron oxide nanoparticles have been synthesized using chain length of (3-aminopropyl) triethoxysilane for cancer therapy. First, we have developed a layer by layer functionalized with grafting 2,4‐toluene diisocyanate as a bi‐functional covalent linker onto a nano-Fe
3 O4 support. Then, they were characterized by Fourier transform infrared, X-ray powder diffraction, field emission scanning electron microscopy, energy-dispersive X-ray spectroscopy, and VSM techniques. Finally, all nanoparticles with positive or negative surface charges were tested against K562 (myelogenous leukemia cancer) cell lines to demonstrate their therapeutic efficacy by MTT assay test. We found that the higher toxicity of Fe3 O4 @SiO2 @APTS ∼ Schiff base-Cu(II) (IC50 : 1000 μg/mL) is due to their stronger in situ degradation, with larger intracellular release of iron ions, as compared to surface passivated NPs. For first time, the molecular dynamic simulations of all compounds were carried out afterwards optimizing using MM+, Semi-empirical (AM1) and Ab-initio (STO-3G), Forcite Gemo Opt, Forcite Dynamics, Forcite Energy and CASTEP in Materials studio 2017. The energy (eV), space group, lattice parameters (Å), unit cell parameters (Å), and electron density of the predicted structures were taken from the CASTEP module of Materials Studio. The docking methods were used to predict the DNA binding affinity, ribonucleotide reductase, and topoisomerase II. [ABSTRACT FROM AUTHOR]- Published
- 2020
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8. Biological studies and computational modeling of two new copper complexes derived from β-diketones and their nano-complexes.
- Author
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Eshaghi Malekshah, Rahime, Salehi, Mehdi, Kubicki, Maciej, and Khaleghian, Ali
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COPPER ions ,BASE pairs ,SCANNING electron microscopy ,MOLECULAR docking ,ULTRAVIOLET-visible spectroscopy - Abstract
The present study was conducted to design and develop new complexes and their metal-based nanodrug (registered as Casiopeínas
® for cancer) with a low toxicity, high efficiency, and high selectivity. First, complexes ([Cu(TTA)(bpy)2 ] (1) and [Cu(TTA)2 (en)] (2) (TTA = 4,4,4-trifluoro-1-(2-furyl)-1,3-butanedione) were synthesized and characterized by X-ray diffraction studies, CHN analysis, conductivity measurements, FT-IR and UV-vis spectroscopy. Second, nanoparticles (NPs) of 3 and 4 with the average size of 63.04 and 85.39 nm were prepared with ultrasound. Scanning electron microscopy patterns of 3 and 4 showed irregular spherical and nanorod particles with spongy surface. Furthermore, the anticancer properties of compounds and nano-compounds were studied in MKN-45 cell line. Then, apoptosis studies were carried out utilizing AO/EB staining methods. Finally, to confirm the in vitro experimental data, the theoretical study was carried out by molecular docking studies. The results of DNA docking analysis revealed that 1 and 2 were inserted with DNA via the minor groove. The binding affinity monitors the order of 1 > 2, with a preference of binding to A-T over G-C base pairs sequences. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
9. New mononuclear copper(II) complexes from β-diketone and β-keto ester N-donor heterocyclic ligands: structure, bioactivity, and molecular simulation studies.
- Author
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Eshaghi Malekshah, Rahime, Salehi, Mehdi, Kubicki, Maciej, and Khaleghian, Ali
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COPPER compounds ,METHYL acetate ,FOURIER transform infrared spectroscopy ,ULTRAVIOLET-visible spectroscopy ,MOLECULAR structure ,SINGLE crystals ,X-ray diffraction - Abstract
Four new mononuclear copper(II) complexes with methyl acetoacetate and benzoylacetone in the presence of 1,10-phenanthroline and 2,2′-bipyridine were synthesized and characterized by elemental analyses, FT-IR, and UV-Vis spectroscopy. The molecular structures of complexes [Cu(MAA)(bpy)(ClO
4 )] (1a), [Cu(bzac)(bpy)]ClO4 (2a), [Cu(MAA)(phen)(ClO4 )] (1b) and [Cu(bzac)(phen)(ClO4 )] (2b) were determined by single crystal X-ray diffraction technique. 1a, 1b, and 2b are five coordinate with a distorted square pyramidal geometry and the structure of 2a consists of isolated [Cu(bzac)(bpy)]+ cations and perchlorate counter anions. The electrochemical studies of copper complexes in acetonitrile solution showed that CuII /CuI reduction processes are electrochemically irreversible. Cytotoxic activity of complexes was screened, including an MTT assay against gastric cancer cell line (MKN-45). The four Cu(II) complexes exhibited lethal effects against MKN-45 cell lines and the half maximal inhibitory concentration (IC50 ) values obtained were much lower in comparison with 5-fluorouracil. In addition, MTT and migration studies revealed that benzoylacetone complexes are more active than complexes of methyl acetoacetate against the MKN-45 cancer cell lines. Docking simulations of Cu(II) complexes on DNA revealed that the most stable adducts with DNA bind in the minor groove. All complexes display a binding specificity to the A/T rich regions. [ABSTRACT FROM AUTHOR]- Published
- 2018
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