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Simple Summary: Coral reef fish diversity forms the foundation of their adaptability. A comprehensive understanding of coral reef fish diversity is crucial for the conservation of both coral reefs and their associated fish species. In this study, we employed three taxonomic diversity indices to analyze the characteristics and changes in taxonomic diversity within a representative coral reef (Meiji Reef) located in the South China Sea from 1998 to 2018. Fish species richness played a significant role in shaping the diversity of coral reef fish families and genera within the South China Sea region. Contrary to findings from 1998–1999, there had been a relative increase in fish family diversity at Meiji Reef during 2017–2018. Distribution patterns among different coral reef fish communities across taxonomic levels exhibited varying degrees of unevenness within the South China Sea region. The changes observed in the taxonomic distinctness index between 1998–1999 and 2016–2018 indicated greater dissimilarity among species relationships and reduced taxonomic uniformity. Coral reef fish are important groups of coral reefs, which have great economic and ecological value. Meiji Reef is a representative tropical semi-enclosed atoll in the South China Sea, with rich fish resources. Based on the data from hand-fishing, line-fishing, and gillnet surveys of fish in Meiji Reef from 1998 to 2018, this study summarized the fish species list of Meiji Reef and analyzed the species composition, inclusion index at the taxonomic level (TINCL), genus–family diversity index (G–F index), average taxonomic distinctness index (Δ+), and variation in taxonomic distinctness (Λ+) and their changes. The results revealed that from 1998 to 2018, there were 166 reef-dwelling fish species on Meiji Reef, belonging to 69 genera, 33 families, and 11 orders, of which 128 species were from 20 families of Perciformes, accounting for 77.10% of the total cataloged species. Regarding the dependence of fish on coral reefs, there were 155 reef-dependent species or resident species (accounting for 93.37%) and 11 reef-independent species or wandering species (accounting for 6.63%). The TINCL of the order, families, and genus of fish in Meiji Reef were very high. The genus diversity index (G index), family diversity index (F index), and G–F index of fish in Meiji Reef were very high, and the G index of fish in Meiji Reef in 1998–1999 was higher than that in 2016–2018. The Δ+ and Λ+ values of fish in Meiji Reef from 1998 to 2018 were 56.1 and 148.5, respectively. Compared with 1998–1999, Δ+ and Λ+ of fish increased during 2016–2018, reflecting that the relatives of fish in Meiji Reef became further distant, and the uniformity of taxonomic relationships among species decreased. The research findings indicated that fish exhibited a high taxonomic diversity in Meiji Reef; however, it also revealed significant fluctuations in the fish diversity of Meiji Reef over an extended period, emphasizing the urgent need for timely protection measures. This investigation significantly contributes to our comprehension of the intricate dynamics governing fish species within Meiji Reef and holds broader implications for biodiversity conservation in tropical marine ecosystems. [ABSTRACT FROM AUTHOR]

The diel vertical migration of mesopelagic fishes in the southern (S-May station and S-Nov station) and central (C-Jun station and C-Dec station) South China Sea was investigated through a series of continuous field surveys conducted in May, June, November, and December 2017. These surveys employed a combination of mid-water trawl and acoustics techniques. The diel migration process, vertical distribution, acoustic migration proportion, and migration pattern of mesopelagic fishes were analyzed. The results revealed that mesopelagic fishes initiated an upward migration before sunset, with the process concluding within 30–120 min after dark. Subsequently, they commenced a downward migration before dawn, which terminated within 10–50 min after sunrise. The mesopelagic deep-sea layers of mesopelagic fishes at the S-May, S-Nov, C-Jun, and C-Dec stations ranged from 360 to 700 m, 350 to 680 m, 350 to 520 m, and 300 to 700 m, respectively. The acoustic migration proportions of mesopelagic fishes at the corresponding stations were found to be approximately 44.5%, 25.7%, 29.8%, and 58.0%, respectively. There were seasonal and regional differences in the vertical migration and distribution patterns of mesopelagic fishes in the South China Sea. A total of 228 species were identified, including 203 fish species, 23 cephalopod species, and 2 shark species. Among these, a subset of 43 fish and cephalopod species exhibited extensive diel vertical migrating behavior. Specifically, this subset comprised 23 lanternfish species, 8 cephalopod species, and 12 other fish species. Lanternfishes were the predominant diel vertical migratory species, while cephalopods also played a significant role in diel vertical migration. The diel migration behavior was found to be slight for Diaphus lucidus, Melamphaes microps, Argyropelecus affinis, and six other fish species. Non-migratory behavior was observed in Sternoptyx obscura, Argyropelecus sladeni, Sternoptyx diaphana, and 13 other fish species. The diel migration habits of 178 additional species of fish, cephalopods, and sharks could not be definitively determined. [ABSTRACT FROM AUTHOR]

Highlights: What are the main findings? The commercial small pelagic fishes (Decapterus maruadsi and Trachurus japonicus) in the Beibu Gulf were still miniaturizing. Fisheries management, characterized by reduced fishing efforts, cannot completely restore population structure in a short period. What are the suggestions for the future fisheries development in the Beibu Gulf? Continuing to maintain low fishing mortality and increasing the catchable length should be the key ways to achieve fishery resource conservation and recovery. Simple Summary: Decapterus maruadsi and Trachurus japonicus, as the main commercial small pelagic fish in the coastal fisheries of China, have been facing the threat of population decline due to overfishing. In this work, we assessed the population status of two commercial small pelagic fish stocks in the Beibu Gulf (in the South China Sea) over the past 15 years (2006–2020). The analysis results show that the commercial small pelagic fishes in the Beibu Gulf were still miniaturizing, and fisheries management characterized by reduced fishing efforts cannot completely restore population structure in a short period. Continuing to maintain low fishing mortality and increasing the catchable length should be the key ways to achieve fishery resource conservation and recovery. Our findings will provide a key scientific basis for future improvements in offshore fisheries management. Long-term variations in population structure, growth, mortality, exploitation rate, and recruitment pattern of two major commercial small pelagic fishes (CSPFs) (Decapterus maruadsi and Trachurus japonicus) are reported based on bottom trawl survey data collected during 2006–2020 in the Beibu Gulf, South China Sea. All individuals collected during each sampling quarter over a period of 15 years were subjected to laboratory-based analysis. In this study, the stock of D. maruadsi and T. japonicus inhabiting the Beibu Gulf was assessed using length-based methods (bootstrapped electronic length frequency analysis (ELEFAN)) to complete stock assessment in different fishery management periods (the division of fisheries management periods was based on China's input and output in the South China Sea offshore fisheries over 15 years, specifically divided into period I (2006–2010), period II (2011–2015), and period III (2016–2020)). The results showed that the mean body length, dominant body size, and estimated asymptotic length of two CSPFs decreased, whereas their growth coefficient decreased, indicating miniaturization and slower growth, respectively. Estimated exploitation rates and catching body length for two CSPFs indicated that both stocks in the Beibu Gulf were overexploited in period I and moderately exploited after 2011. These stocks were taking a good turn in status in period III, with the exploitation rate much lower than the initial period and reversing the downward trend in catching body length. Furthermore, the variations in the spawning season of the two CSPF stocks and their barely satisfactory expected yield indicated the complexity of the current fishery management in the Beibu Gulf. These results suggest that management measures to reduce fishing pressure may have a positive influence on the biological characteristics of those CSPFs in the Beibu Gulf; however, the stock structure already affected by overfishing will be a huge challenge for the conservation and restoration of fisheries resources in the future. Given that the current stocks of D. maruadsi and T. japonicus in the Beibu Gulf still have low first-capture body length (Lc) and high fishing mortality (F) (compared to F0.1), we identify a need to refine population structure by controlling fishing efforts and increasing catchable size, and more consideration should be given to the local fishery resource status in fisheries management. [ABSTRACT FROM AUTHOR]

Highlights: What are the main findings? The abundance of most of fish stocks in the Beibu Gulf continued to decline over the last 15 years. What is the implication of the main finding? Environmental variations caused by climate events can episodically enhance the abundance of certain fish stocks. Warming may be the reason of northward shifts in distribution of most fishes. Improving prediction of ecological responses to climate variability requires understanding how local fish population dynamics are impacted by climate events. The present study was conducted in the Beibu Gulf of the northwestern South China Sea where the fisheries are characterized by high ecological and commercial value. We evaluated the relationship between major commercial fish population dynamics (abundance and distribution) and climate periods, using survey data from 2006–2020. The analysis using random forest and GAM models show that climate events are not the best predictors for the variations of fish abundance, because abundance of most fish stocks decreases significantly with the year, and the increasing fishing pressure over time can better explain the overall downward trend in fishery stocks. However, environmental variables that correlate significantly with interannual variation in ONI may impact fish abundance in short terms. Our research suggests that climate events leading to higher surface seawater salinity in winter favors pelagic fishes by improving habitat availability, and higher near-surface chlorophyll-α concentration during La Niña events provides better food condition for overwintering fish. In addition, there is no clear evidence that climatic events have a significant impact on gravity center of fish distribution, whereas climate change has caused most fishes to move to cooler coastal waters in the north. [ABSTRACT FROM AUTHOR]

The choice of spatial and temporal scales affects the performance of fisheries models and is particularly important in exploring the relationship between resource abundance and the marine environment. Traditional fishery models are constructed at a particular scale, and the results of the study hold only at that scale. Sthenoteuthis oualaniensis is one of the main target species of large-scale light falling-net fishing in the Nansha Islands in the South China Sea. We used the S. oualaniensis fishery in the Nansha Islands as an example to compare the performance of fisheries models for 12 spatial and temporal settings and to explore the relationship between the abundance of S. oualaniensis and the marine environment in the Nansha Islands under the optimal spatial and temporal settings. The results show that the spatial and temporal scale chosen in the construction of the fishery model is not as fine as possible in generalized additive models (GAMs) for abundance index-catch per unit effort (AI-CPUE)-based scenarios, and 0.5° with the season was the best spatial and temporal setting; meanwhile, in GAMs for AI-effort-based scenarios, 0.1° with the month was the best spatial and temporal setting. The distribution of S. oualaniensis resources in the Nansha Islands was characterized by significant seasonal variation, and the monthly center of gravity had a significant negative correlation with the Niño 3.4 index and the PDO index, with correlation coefficients of 100 and 1000, respectively. It is hypothesized that Pacific Decadal Oscillation and ENSO events affect the marine environment in the South China Sea by influencing the strength of the Kuroshio force and the degree of Kuroshio curvature, which in turn affects the distribution of S. oualaniensis in the Nansha Islands. The results help us to understand the influence of spatial and temporal scales on fisheries models and the environmental factors affecting the distribution of S. oualaniensis resources in the Nansha Islands. Thus, they provide a scientific basis for the sustainable development of S. oualaniensis fisheries in this region. [ABSTRACT FROM AUTHOR]

Qilianyu Islands coral reefs (QICR), located in the northeastern part of the South China Sea, has been affected by human activities and natural disturbance. To characterize the trophic structure, ecosystem properties and keystone species of this region, a food-web model for the QICR is developed using methods involving a mass-balance approach with Ecopath with Ecosim software. Trophic levels range from 1.00 for detritus and primary producers to 3.80 for chondrichthyes. The mean trophic transfer efficiency for the entire ecosystem is 13.15%, with 55% of total energy flow originating from primary producers. A mixed trophic impact analysis indicates that coral strongly impacts most components of this ecosystem. A comparison of our QICR model with that for other coral reef ecosystems suggests that the QICR ecosystem is immature and/or is degraded. [ABSTRACT FROM AUTHOR]

Frigate tuna Auxis thazard fishery is considered a potential marine resource in the open South China Sea (SCS). However, little is known about the spatial and temporal distribution of its habitat, and how this may respond to environmental changes. Using fish survey and remote sensing data from 2015–2019, we applied generalized additive models to identify relationships between environmental factors and the distribution of A. thazard in the SCS. To examine seasonal patterns in the habitat of A. thazard in the SCS, we generated a habitat suitability index model using environmental factors screened by generalized additive models. Results showed that A. thazard migrates from south to north in the SCS, and its suitable habitat is patchily distributed. Significant environmental factors affecting the habitat of A. thazard distribution were different in different seasons; we demonstrated A. thazard to be sensitive to Chl-a in spring (optimum 0.155, optimal range ~0.1252–0.1840), and in summer to be sensitive to SST (optimum 30.405, optimal range ~29.789–31.021) and SSH (optimum 0.741, optimal range ~0.618–0.864). Suitable habitat in spring occurs mainly in northeastern areas, while in summer it occurs mainly around the southeastern Nansha Islands. Compared with that in spring, the area of suitable habitat increases in summer, as does the habitat suitability index of the entire sea area. These results improve our understanding of environmental factors that affect the distribution of A. thazard habitat in the SCS, and provide a scientific basis for the development and management of A. thazard resources. [ABSTRACT FROM AUTHOR]

Owing to climate change and anthropogenic stressors, the abundance and diversity of reef fishes have globally decreased. However, we know little about the long-term change in reef fishes in the South China Sea (SCS). To reveal the response of reef fishes to these threats in the SCS, based on the fish specimens at Yongshu Reef lagoon collected in 1999 and 2016–2019, this study investigated variations in fish composition and community structure. Additionally, we inferred the changes in the coral cover of Yongshu Reef based on the change of the coral cover of near Meiji Reef in the SCS, sea surface temperature (SST) in Yongshu Reef, and total annual catch of Epinephelinae from China in the SCS. We found that compared with 1999, the number of dominant species in 2016–2019 decreased. The relative dominance of the first dominant species increased from 24.46 in 1999 to 39.44 in 2016–2019. Indices of catch per unit effort, species diversity and richness declined from 1999 to 2016–2019. Community pattern changed with some species with a higher trophic level (3.7–4.5) decreased, while those with lower trophic level (2.2–4.1) increased greatly. Some species with high economic value and important ecological functions decreased or disappeared locally. Correlation analysis indicated that declining coral cover, increasing fishing and rising SST were clearly associated with changes in fish community structure at Yongshu Reef. We speculated that declining coral cover and increasing fishing had a direct impact on the degradation of fish communities at Yongshu Reef lagoon, but increasing SST had an indirect impact on that. To conserve coral reef fish, it is recommended to take rigorous measures for improving habitat and protecting resource. [ABSTRACT FROM AUTHOR]

With the progression of overfishing along the coast, oceanic fisheries in the South China Sea have attracted increasing attention from bordering countries. Fishing with lights has developed rapidly over the past decade. In this study, we analysed the trend in fishing over the spring fishing season (March–April) from 2012 to 2020 in the open-SCS fishing zone based on nightly satellite. The results indicated that the number of fishing boats detected by satellites were apparently influenced by the phases of the moon. Using data from moonless nights, we estimated that the number of fishing boats increased from ∼400 to ∼2000 over the past decade. These fishing craft in the open-SCS could be classified into large falling net vessels with bright lights and tuna fishing boats with dim lights. The nightly images of large falling net vessels were studied further using records from a typical commercial fishing vessel and, on this basis, we established an algorithm to extract data for this type of craft, whose numbers were estimated to have increased from ∼20 to ∼200 over the past decade. Using this algorithm, we were able to trace the development of these fleets and map out their distribution patterns in the open-SCS. [ABSTRACT FROM AUTHOR]

Threadfin porgy Evynnis cardinalis is both a dominant fish species and an important fishing target in bottom trawl fisheries in the Beibu Gulf, South China Sea. It was listed as endangered (EN) in a recent International Union for Conservation of Nature (IUCN) red list. Despite its economic importance and endangered status, limited research on its biological characteristics and spatial–temporal distribution has been undertaken this last decade, creating uncertainty in current conservation and management. We analyse this species' spatial distribution characteristics using data from four seasonal bottom trawl surveys in 2014–2015, and report average catch per unit effort to vary seasonally, from 49.1 to 594.5 ind h−1. Growth, mortality and sexual maturity are reported for four time periods based on data from bottom trawl fishery surveys over 1961–1962, 1998–1999, 2006, and 2014–2015. Length frequency distributions changed from bimodal to unimodal, and the female‐to‐male ratio increased. Mean body length and length at first maturity decreased, whereas the growth coefficient increased, indicating miniaturization, early sexual maturity and accelerated growth, respectively. We report sparid catch to have first exceeded maximum sustainable yield in 2001, and to have remained overfished from 2010 to 2015. Since the 1980s, low‐trophic‐level fishes such as E. cardinalis have replaced high‐trophic‐level fishes such as Crimson snapper Lutjanus erythropterus to become dominant species. As catches have increased substantially, these species have been faced with overfishing, driving the ecosystem into an unstable state. [ABSTRACT FROM AUTHOR]

This is an exploratory analysis combining artificial intelligence algorithms, fishery acoustics technology, and a variety of abiotic factors in low-latitude coastal waters. This approach can be used to analyze the sensitivity level between the acoustic density of fishery resources and various abiotic factors in the surface mixed layer (the water layer above the constant thermocline) and the bottom cold water layer (the water layer below the constant thermocline). The fishery acoustic technology is used to obtain the acoustic density of fishery resources in each water layer, which is characterized by Nautical Area Scattering Coefficient values (NASC), and the artificial intelligence algorithm is used to rank the sensitivity of various abiotic factors and NASC values of two water layers, and the grades are classified according to the cumulative contribution percentage. We found that stratified or multidimensional analysis of the sensitivity of abiotic factors is necessary. One factor could have different levels of sensitivity in different water layers, such as temperature, nitrite, water depth, and salinity. Besides, eXtreme Gradient Boosting and random forests models performed better than the linear regression model, with 0.2 to 0.4 greater R2 value. The performance of the models had smaller fluctuations with a larger sample size. [ABSTRACT FROM AUTHOR]

Knowledge on understanding quality of The Tropical Rainfall Measuring Mission (TRMM) 3B42 V7 dataset over mid-high latitudes regions is limited, which restricts its potential application in climate and hydrology fields. This study focuses on giving a detailed evaluation of the accuracy of 3B42 with observation data obtained from a high density rain gauge network over the Hun-Tai Basin in Liaoning Province, northeast China during 1998-2006. Several accuracy statistics are used to evaluate it quantitatively in terms of error of precipitation amount and ability in detecting the occurrence of precipitation events. Comparative results for three timescales (daily, monthly, and annual scale) at the basin scale show that 3B42 is more suitable for analyzing precipitation at large timescale, especially monthly scale (strong correlation of 0.93) due to the use of monthly rain gauge observation for bias correction in producing 3B42. Yet, 3B42 generally overestimates precipitation at all three timescales, especially the most serious degree of overestimation at daily scale with the absolute bias of 123.94 % and light to moderate rain events (1-20 mm). Moreover, the performance is influenced by topography, and 3B42 has a larger error of precipitation amount but has a better detection of the occurrence of precipitation events over high-altitude region than those over low-altitude region. Also, accuracy of 3B42 decreases with precipitation intensity, it suggests that 3B42 is incapable of capturing heavy precipitation events with desirable accuracy for the study on extreme precipitation events. In following works, overestimation characteristic should be weaken by improving satellite-based precipitation estimations algorithms and developing more effective bias correction techniques, it is important for streamflow simulations using 3B42 as forcing data over ungauged regions. [ABSTRACT FROM AUTHOR]

Satellite-based precipitation data have contributed greatly to quantitatively forecasting precipitation, and provides a potential alternative source for precipitation data allowing researchers to better understand patterns of precipitation over ungauged basins. However, the absence of calibration satellite data creates considerable uncertainties for The Tropical Rainfall Measuring Mission (TRMM) Multisatellite Precipitation Analysis (TMPA) 3B42 product over high latitude areas beyond the TRMM satellites latitude band (38°NS). This study attempts to statistically assess TMPA V7 data over the region beyond 40°NS using data obtained from numerous weather stations in 1998–2012. Comparative analysis at three timescales (daily, monthly and annual scale) indicates that adoption of a monthly adjustment significantly improved correlation at a larger timescale increasing from 0.63 to 0.95; TMPA data always exhibits a slight overestimation that is most serious at a daily scale (the absolute bias is 103.54%). Moreover, the performance of TMPA data varies across all seasons. Generally, TMPA data performs best in summer, but worst in winter, which is likely to be associated with the effects of snow/ice-covered surfaces and shortcomings of precipitation retrieval algorithms. Temporal and spatial analysis of accuracy indices suggest that the performance of TMPA data has gradually improved and has benefited from upgrades; the data are more reliable in humid areas than in arid regions. Special attention should be paid to its application in arid areas and in winter with poor scores of accuracy indices. Also, it is clear that the calibration can significantly improve precipitation estimates, the overestimation by TMPA in TRMM-covered area is about a third as much as that in no-TRMM area for monthly and annual precipitation. The systematic evaluation of TMPA over mid-high latitudes provides a broader understanding of satellite-based precipitation estimates, and these data are important for the rational application of TMPA methods in climatic and hydrological research. [ABSTRACT FROM AUTHOR]

Glacier retreat is a common phenomenon in the Qinghai-Tibetan Plateau (QTP) with global warming during the past several decades, except for several mountains, such as the glaciers in the Karakoram and the western Kunlun Mountains. The dynamic nature of glaciers significantly influences the hydrologic, geologic, and ecological systems in the mountain regions. The sensitivity and dynamic response to climate change make glaciers excellent indicators of regional and global climate change, such as glacier melting and retreat with the rise of local air temperature. Long-term monitoring of glacier change is important to understand and assess past, current, and possible future climate environments. Some glacier surfaces are safe and accessible by foot, and are monitored using mass balance stakes and snow pits. Meanwhile, some glaciers with inaccessible termini may be surveyed using satellite remote images and Unmanned Aerial Vehicles (UAVs). Those inaccessible glaciers are generally covered by debris in the southeast QTP, which is hardly accessible due to the wide distribution of crevasses and cliffs. In this paper, we used the UAV to monitor the dynamic features of mass balance and velocity of the debris-covered region of Baishui River Glacier No. 1 (BRG1) on the Yulong Snow Mountain (YSM), Southeast QTP. We obtained the Orthomosaic and DEM with a high resolution of 0.10 m on 20 May and 22 September 2018, respectively. The comparison showed that the elevation of the debris-covered region of the BRG1 decreased by 6.58 m ± 3.70 m on average, and the mean mass balance was −5.92 m w.e. ± 3.33 m w.e. during the summer, correspondingly. The mean displacement of debris-covered glacier surface was 18.30 m ± 6.27 m, that is, the mean daily velocity was 0.14 m/d ± 0.05 m/d during the summer. In addition, the UAV images not only revealed the different patterns of glacier melting and displacement but also captured the phenomena of mass loss due to ice avalanches at the glacier front and the development of large crevasses. This study provides a feasible method for understanding the dynamic features of global debris-covered glaciers which are inaccessible and unobservable by other means. [ABSTRACT FROM AUTHOR]