Correlating phenotypes with genotypes remains the major postgenomic challenge. Attemptsto correlate phenotype characteristics associated with ethnicity, geographical divisions, or diseases to genotypeshave had limited success. This means that current approaches for identifying phenotypes associated with haplotypesmay be inadequate.We hypothesize that a human phenome based on Ayurveda could provide an appropriate approach.Specifically, there could be a genetic basis for the three major constitutions () described inAyurveda. Theclassification is based on differences in physical, physiological, and psychologics characteristicsand is independent of racial, ethnic, or geographical considerations. It may provide an appropriatemeans of classifying phenotypes to be considered collectively for genotyping.As a pilot study to test the hypothesis, we evaluated 76 subjects both for theirand humanleucocyte antigen (HLA) DRB1 types. The genomic DNA was extracted using a standard protocol. Subsequently,HLA DRB1 typing was done by low-resolution polymerase chain reaction sequence specific primersand oligonucleotide probes.We observed a reasonable correlation between HLA type andtype. The complete absenceof the HLA DRB1*02 allele in the Vataand of HLA DRB1*13 in thetype are significant, withX2 = 4.715 and<0.05. HLA DRB1*10 had higher allele frequency in thetype than in theand Vata types.Ayurveda classifies the whole human population in three major constitutions asand their possible combinations. Their homologous relation to human genetic structure needs to be studiedfor validation. If validated, our hypothesis would have far reaching implications for pharmacogenomics,modern genetics, human health, and Ayurveda. [ABSTRACT FROM AUTHOR]