58 results on '"Arai, Tatsuya"'
Search Results
2. Real-time tilting and twisting motions of ligand-bound states of α7 nicotinic acetylcholine receptor.
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Yang, Yue, Arai, Tatsuya, Sasaki, Daisuke, Kuramochi, Masahiro, Inagaki, Hidetoshi, Ohashi, Sumiko, Sekiguchi, Hiroshi, Mio, Kazuhiro, Kubo, Tai, and Sasaki, Yuji C.
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NICOTINIC acetylcholine receptors ,CHOLINERGIC receptors ,GABA receptors ,ALZHEIMER'S disease ,OLANZAPINE ,CENTRAL nervous system ,IVERMECTIN - Abstract
The α7 nicotinic acetylcholine receptor is a member of the nicotinic acetylcholine receptor family and is composed of five α7 subunits arranged symmetrically around a central pore. It is localized in the central nervous system and immune cells and could be a target for treating Alzheimer's disease and schizophrenia. Acetylcholine is a ligand that opens the channel, although prolonged application rapidly decreases the response. Ivermectin was reported as one of the positive allosteric modulators, since the binding of Ivermectin to the channel enhances acetylcholine-evoked α7 currents. One research has suggested that tilting motions of the nicotinic acetylcholine receptor are responsible for channel opening and activation. To verify this hypothesis applies to α7 nicotinic acetylcholine receptor, we utilized a diffracted X-ray tracking method to monitor the stable twisting and tilting motion of nAChR α7 without a ligand, with acetylcholine, with Ivermectin, and with both of them. The results show that the α7 nicotinic acetylcholine receptor twists counterclockwise with the channel transiently opening, transitioning to a desensitized state in the presence of acetylcholine and clockwise without the channel opening in the presence of Ivermectin. We propose that the conformational transition of ACh-bound nAChR α7 may be due to the collective twisting of the five α7 subunits, resulting in the compression and movement, either downward or upward, of one or more subunits, thus manifesting tilting motions. These tilting motions possibly represent the transition from the resting state to channel opening and potentially to the desensitized state. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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3. Visualization of the Dynamics of Photoinduced Crawling Motion of 4-(Methylamino)Azobenzene Crystals via Diffracted X-ray Tracking.
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Saito, Koichiro, Ichiyanagi, Kouhei, Fukaya, Ryo, Haruki, Rie, Nozawa, Shunsuke, Sasaki, Daisuke, Arai, Tatsuya, Sasaki, Yuji C., McGehee, Keegan, Saikawa, Makoto, Gao, Minghao, Wei, Zhichao, Kwaria, Dennis, and Norikane, Yasuo
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MOLECULAR crystals ,CRYSTALS ,AZOBENZENE ,IRRADIATION ,DATA visualization ,PARTICLE dynamics - Abstract
The photoinduced crawling motion of crystals is a continuous motion that azobenzene molecular crystals exhibit under light irradiation. Such motion enables object manipulation at the microscale with a simple setup of fixed LED light sources. Transportation of nano-/micromaterials using photoinduced crawling motion has recently been reported. However, the details of the motion mechanism have not been revealed so far. Herein, we report visualization of the dynamics of fine particles in 4-(methylamino)azobenzene (4-MAAB) crystals under light irradiation via diffracted X-ray tracking (DXT). Continuously repeated melting and recrystallization of 4-MAAB crystals under light irradiation results in the flow of liquid 4-MAAB. Zinc oxide (ZnO) particles were introduced inside the 4-MAAB crystals to detect diffracted X-rays. The ZnO particles rotate with the flow of liquid 4-MAAB. By using white X-rays with a wide energy width, the rotation of each zinc oxide nanoparticle was detected as the movement of a bright spot in the X-ray diffraction pattern. It was clearly shown that the ZnO particles rotated increasingly as the irradiation light intensity increased. Furthermore, we also found anisotropy in the rotational direction of ZnO particles that occurred during the crawling motion of 4-MAAB crystals. It has become clear that the flow perpendicular to the supporting film of 4-MAAB crystals is enhanced inside the crystal during the crawling motion. DXT provides a unique means to elucidate the mechanism of photoinduced crawling motion of crystals. [ABSTRACT FROM AUTHOR]
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- 2023
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4. The Blinking of Small-Angle X-ray Scattering Reveals the Degradation Process of Protein Crystals at Microsecond Timescale.
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Arai, Tatsuya, Mio, Kazuhiro, Onoda, Hiroki, Chavas, Leonard M. G., Umena, Yasufumi, and Sasaki, Yuji C.
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CRYSTALLOIDS (Botany) ,PROTEOLYSIS ,X-ray scattering ,SMALL-angle X-ray scattering ,BIOMACROMOLECULES ,X-ray crystallography - Abstract
X-ray crystallography has revolutionized our understanding of biological macromolecules by elucidating their three-dimensional structures. However, the use of X-rays in this technique raises concerns about potential damage to the protein crystals, which results in a quality degradation of the diffraction data even at very low temperatures. Since such damage can occur on the micro- to millisecond timescale, a development in its real-time measurement has been expected. Here, we introduce diffracted X-ray blinking (DXB), which was originally proposed as a method to analyze the intensity fluctuations of diffraction of crystalline particles, to small-angle X-ray scattering (SAXS) of a lysozyme single-crystal. This novel technique, called the small-angle X-ray blinking (SAXB) method, analyzes the fluctuation in SAXS intensity reflecting the domain fluctuation in the protein crystal caused by the X-ray irradiation, which could be correlated with the X-ray-induced damage on the crystal. There was no change in the protein crystal's domain dynamics between the first and second X-ray exposures at 95K, each of which lasted 0.7 s. On the other hand, its dynamics at 295K increased remarkably. The SAXB method further showed a dramatic increase in domain fluctuations with an increasing dose of X-ray radiation, indicating the significance of this method. [ABSTRACT FROM AUTHOR]
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- 2023
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5. Direct observation of 890 ns dynamics of carbon black and polybutadiene in rubber materials using diffracted x-ray blinking.
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Kuramochi, Masahiro, Kirkwood, Henry J., Koliyadu, Jayanath C. P., Letrun, Romain, de Wijn, Raphael, Kim, Chan, Masui, Tomomi, Mio, Kazuhiro, Arai, Tatsuya, Sekiguchi, Hiroshi, Kishimoto, Hiroyuki, Mancuso, Adrian P., Sato, Tokushi, and Sasaki, Yuji C.
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CARBON-black ,POLYBUTADIENE ,RUBBER ,AUTOMOBILE tires ,X-ray lasers ,X-rays - Abstract
Dynamic behavior in soft matter physics, biology, and nanoscience frequently occurs on submicrosecond timescales. Diffracted x-ray blinking (DXB) is a unique method that can provide a broad range of spatial scale information and is becoming an attractive tool for use at high repetition rate x-ray facilities. In this study, we performed DXB experiments with 890 ns time resolution at the European X-ray Free-Electron Laser Facility to obtain dynamic information about rubber samples that are typically used in automobile tires. Time-resolved scattering was simultaneously recorded for two samples that mainly consisted of carbon black (CB) and polybutadiene (PB). These samples contained either graphitized or non-graphitized CB and displayed significantly different dynamics. A clear interaction between CB and PB was observed, indicating that the mobility of PB was changed by the introduction of CB. Restricted polymer motion was observed in the q-range of 0.78–1.58 Å
−1 regions. Our results suggest that the particle network can be flexibly controlled without impairing the mechanical strength of the rubber. [ABSTRACT FROM AUTHOR]- Published
- 2023
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6. Real-Time Observation of Capsaicin-Induced Intracellular Domain Dynamics of TRPV1 Using the Diffracted X-ray Tracking Method.
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Mio, Kazuhiro, Ohkubo, Tatsunari, Sasaki, Daisuke, Arai, Tatsuya, Sugiura, Mayui, Fujimura, Shoko, Nozawa, Shunsuke, Sekiguchi, Hiroshi, Kuramochi, Masahiro, and Sasaki, Yuji C.
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- 2023
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7. Adsorption of ice-binding proteins onto whole ice crystal surfaces does not necessarily confer a high thermal hysteresis activity.
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Arai, Tatsuya, Yamauchi, Akari, Yang, Yue, Singh, Shiv Mohan, Sasaki, Yuji C., and Tsuda, Sakae
- Abstract
Many psychrophilic microorganisms synthesize ice-binding proteins (IBPs) to survive the cold. The functions of IBPs are evaluated by the effect of the proteins on the nonequilibrium water freezing-point depression, which is called “thermal hysteresis (TH)”, and the inhibitory effect of the proteins on the growth of larger ice crystals, which is called “ice recrystallization inhibition (IRI)”. To obtain mechanical insight into the two activities, we developed a modified method of ice affinity purification and extracted two new IBP isoforms from Psychromyces glacialis, an Arctic glacier fungus. One isoform was found to be an approximately 25 kDa protein (PsgIBP_S), while the other is a 28 kDa larger protein (PsgIBP_L) that forms an intermolecular dimer. Their TH activities were less than 1 °C at millimolar concentrations, implying that both isoforms are moderately active but not hyperactive IBP species. It further appeared that both isoforms exhibit high IRI activity even at submicromolar concentrations. Furthermore, the isoforms can bind to the whole surface of a hemispherical single ice crystal, although such ice-binding was generally observed for hyperactive IBP species. These results suggest that the binding ability of IBPs to whole ice crystal surfaces is deficient for hyperactivity but is crucial for significant IRI activity. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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8. Prone positioning redistributes gravitational stress in the lung in normal conditions and in simulations of oedema.
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Kizhakke Puliyakote, Abhilash S., Holverda, Sebastiaan, Sá, Rui C., Arai, Tatsuya J., Theilmann, Rebecca J., Botros, Liza, Bogaard, Harm J., Prisk, G. Kim, and Hopkins, Susan R.
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PATIENT positioning ,ADULT respiratory distress syndrome ,FORCED expiratory volume ,LUNGS ,MAGNETIC resonance imaging - Abstract
New Findings: What is the central question of this study?How does the interaction between posture and gravity affect the stresses on the lung, particularly in highly inflated gravitationally non‐dependent regions, which are potentially vulnerable to increased mechanical stress and injury?What is the main finding and its importance?Changes in stress attributable to gravity are not well characterized between postures. Using a new metric of gravitational stress, we show that regions of the lung near maximal inflation have the greatest gravitational stresses while supine, but not while prone. In simulations of increased lung weight consistent with severe pulmonary oedema, the prone lung has lower gravitational stress in vulnerable, non‐dependent regions, potentially protecting them from overinflation and injury. Prone posture changes the gravitational vector, and potentially the stress induced by tissue deformation, because a larger lung volume is gravitationally dependent when supine, but non‐dependent when prone. To evaluate this, 10 normal subjects (six male and four female; age, means ± SD = 27 ± 6 years; height, 171 ± 9 cm; weight, 69 ± 13 kg; forced expiratory volume in the first second/forced expiratory volume as a percentage of predicted, 93 ± 6%) were imaged at functional residual capacity, supine and prone, using magnetic resonance imaging, to quantify regional lung density. We defined regional gravitational stress as the cumulative weight, per unit area, of the column of lung tissue below each point. Gravitational stress was compared between regions of differing inflation to evaluate differences between highly stretched, and thus potentially vulnerable, regions and less stretched lung. Using reference density values for normal lungs at total lung capacity (0.10 ± 0.03 g/ml), regions were classified as highly inflated (density < 0.13 g/ml, i.e., close to total lung capacity), intermediate (0.13 ≤ density < 0.16 g/ml) or normally inflated (density ≥ 0.16 g/ml). Gravitational stress differed between inflation categories while supine (−1.6 ± 0.3 cmH2O highly inflated; −1.4 ± 0.3 cmH2O intermediate; −1.1 ± 0.1 cmH2O normally inflated; P = 0.05) but not while prone (−1.4 ± 0.2 cmH2O highly inflated; −1.3 ± 0.2 cmH2O intermediate; −1.3 ± 0.1 cmH2O normally inflated; P = 0.39), and increased more with height from dependent lung while supine (−0.24 ± 0.02 cmH2O/cm supine; −0.18 ± 0.04 cmH2O/cm prone; P = 0.05). In simulated severe pulmonary oedema, the gradient in gravitational stress increased in both postures (all P < 0.0001), was greater in the supine posture than when prone (−0.57 ± 0.21 cmH2O/cm supine; −0.34 ± 0.16 cmH2O/cm prone; P = 0.0004) and was similar to the gradient calculated from supine computed tomography images in a patient with acute respiratory distress syndrome (−0.51 cmH2O/cm). The non‐dependent lung has greater gravitational stress while supine and might be protected while prone, particularly in the presence of oedema. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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9. Gasdermin D–mediated release of IL-33 from senescent hepatic stellate cells promotes obesity-associated hepatocellular carcinoma.
- Author
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Yamagishi, Ryota, Kamachi, Fumitaka, Nakamura, Masaru, Yamazaki, Shota, Kamiya, Tomonori, Takasugi, Masaki, Cheng, Yi, Nonaka, Yoshiki, Yukawa-Muto, Yoshimi, Thuy, Le Thi Thanh, Harada, Yohsuke, Arai, Tatsuya, Loo, Tze Mun, Yoshimoto, Shin, Ando, Tatsuya, Nakajima, Masahiro, Taguchi, Hayao, Ishikawa, Takamasa, Akiba, Hisaya, and Miyake, Sachiko
- Abstract
Long-term senescent cells exhibit a secretome termed the senescence-associated secretory phenotype (SASP). Although the mechanisms of SASP factor induction have been intensively studied, the release mechanism and how SASP factors influence tumorigenesis in the biological context remain unclear. In this study, using a mouse model of obesity-induced hepatocellular carcinoma (HCC), we identified the release mechanism of SASP factors, which include interleukin-1β (IL-1β)– and IL-1β–dependent IL-33, from senescent hepatic stellate cells (HSCs) via gasdermin D (GSDMD) amino-terminal–mediated pore. We found that IL-33 was highly induced in senescent HSCs in an IL-1β–dependent manner in the tumor microenvironment. The release of both IL-33 and IL-1β was triggered by lipoteichoic acid (LTA), a cell wall component of gut microbiota that was transferred and accumulated in the liver tissue of high-fat diet–fed mice, and the release of these factors was mediated through cell membrane pores formed by the GSDMD amino terminus, which was cleaved by LTA-induced caspase-11. We demonstrated that IL-33 release from HSCs promoted HCC development via the activation of ST2-positive T
reg cells in the liver tumor microenvironment. The accumulation of GSDMD amino terminus was also detected in HSCs from human NASH-associated HCC patients, suggesting that similar mechanism could be involved in a certain type of human HCC. These results uncover a release mechanism for SASP factors from sensitized senescent HSCs in the tumor microenvironment, thereby facilitating obesity-associated HCC progression. Furthermore, our findings highlight the therapeutic potential of inhibitors of GSDMD-mediated pore formation for HCC treatment. Release of IL-33 in HCC: Secretion of senescence-associated secretory phenotype (SASP) factors by senescent hepatic stellate cells promotes the development of hepatocellular carcinoma (HCC); however, the release mechanism is not well understood. Yamagishi et al. used an obesity-induced HCC mouse model to study SASP factor release from hepatic stellate cells within tumors. IL-33 release was triggered by lipoteichoic acid, which accumulated in the livers of obese mice. Full-length IL-33 was cleaved to its short active form and released into the tumor microenvironment through gasdermin D N-terminal pores. Secreted IL-33 bound to ST2+ Treg cells, resulting in impaired CD8+ -mediated antitumor immunity and the development of HCC. These findings shed light on SASP factor release and suggest that targeting IL-33 release from senescent cells may be an attractive therapy for HCC. [ABSTRACT FROM AUTHOR]- Published
- 2022
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10. Laboratory diffracted x-ray blinking to monitor picometer motions of protein molecules and application to crystalline materials.
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Arai, Tatsuya, Inamasu, Rena, Yamaguchi, Hiroki, Sasaki, Daisuke, Sato-Tomita, Ayana, Sekiguchi, Hiroshi, Mio, Kazuhiro, Tsuda, Sakae, Kuramochi, Masahiro, and Sasaki, Yuji C.
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DIFFUSION coefficients ,CRYSTALLINE polymers ,X-rays ,ANTIFREEZE proteins ,MOLECULES - Abstract
In recent years, real-time observations of molecules have been required to understand their behavior and function. To date, we have reported two different time-resolved observation methods: diffracted x-ray tracking and diffracted x-ray blinking (DXB). The former monitors the motion of diffracted spots derived from nanocrystals labeled onto target molecules, and the latter measures the fluctuation of the diffraction intensity that is highly correlated with the target molecular motion. However, these reports use a synchrotron x-ray source because of its high average flux, resulting in a high time resolution. Here, we used a laboratory x-ray source and DXB to measure the internal molecular dynamics of three different systems. The samples studied were bovine serum albumin (BSA) pinned onto a substrate, antifreeze protein (AFP) crystallized as a single crystal, and poly{2-(perfluorooctyl)ethyl acrylate} (PC
8 FA) polymer between polyimide sheets. It was found that not only BSA but also AFP and PC8 FA molecules move in the systems. In addition, the molecular motion of AFP molecules was observed to increase with decreasing temperature. The rotational diffusion coefficients (DR ) of BSA, AFP, and PC8 FA were estimated to be 0.73 pm2 /s, 0.65 pm2 /s, and 3.29 pm2 /s, respectively. Surprisingly, the DR of the PC8 FA polymer was found to be the highest among the three samples. This is the first report that measures the molecular motion of a single protein crystal and polymer by using DXB with a laboratory x-ray source. This technique can be applied to any kind of crystal and crystalline polymer and provides atomic-order molecular information. [ABSTRACT FROM AUTHOR]- Published
- 2021
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11. Use of the inverse solution guidance algorithm method for RF ablation catheter guidance.
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Lv, Wener, Barrett, Conor D., Arai, Tatsuya, Bapat, Aneesh, Armoundas, Antonis A., Cohen, Richard J., and Lee, Kichang
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BIOLOGICAL models ,COMPUTER simulation ,ANIMAL experimentation ,CATHETER ablation ,SWINE ,VENTRICULAR tachycardia ,CATHETERIZATION ,ALGORITHMS ,CATHETERS - Abstract
Introduction: We previously introduced the inverse solution guidance algorithm (ISGA) methodology using a Single Equivalent Moving Dipole model of cardiac electrical activity to localize both the exit site of a re‐entrant circuit and the tip of a radiofrequency (RF) ablation catheter. The purpose of this study was to investigate the use of ISGA for ablation catheter guidance in an animal model. Methods: Ventricular tachycardia (VT) was simulated by rapid ventricular pacing at a target site in eleven Yorkshire swine. The ablation target was established using three different techniques: a pacing lead placed into the ventricular wall at the mid‐myocardial level (Type‐1), an intracardiac mapping catheter (Type‐2), and an RF ablation catheter placed at a random position on the endocardial surface (Type‐3). In each experiment, one operator placed the catheter/pacing lead at the target location, while another used the ISGA system to manipulate the RF ablation catheter starting from a random ventricular location to locate the target. Results: The average localization error of the RF ablation catheter tip was 0.31 ± 0.08 cm. After analyzing approximately 35 cardiac cycles of simulated VT, the ISGA system's accuracy in locating the target was 0.4 cm after four catheter movements in the Type‐1 experiment, 0.48 cm after six movements in the Type‐2 experiment, and 0.67 cm after seven movements in the Type‐3 experiment. Conclusion: We demonstrated the feasibility of using the ISGA method to guide an ablation catheter to the origin of a VT focus by analyzing a few beats of body surface potentials without electro‐anatomic mapping. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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12. Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.
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Khan, N. M.-Mofiz Uddin, Arai, Tatsuya, Tsuda, Sakae, and Kondo, Hidemasa
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TYPHULA ,ANTIFREEZE proteins ,HYPERACTIVITY ,CRYSTAL structure ,PHENYLALANINE - Abstract
Antifreeze proteins (AFPs) inhibit ice growth by adsorbing onto specific ice planes. Microbial AFPs show diverse antifreeze activity and ice plane specificity, while sharing a common molecular scaffold. To probe the molecular mechanisms responsible for AFP activity, we here characterized the antifreeze activity and crystal structure of TisAFP7 from the snow mold fungus Typhula ishikariensis. TisAFP7 exhibited intermediate activity, with the ability to bind the basal plane, compared with a hyperactive isoform TisAFP8 and a moderately active isoform TisAFP6. Analysis of the TisAFP7 crystal structure revealed a bound-water network arranged in a zigzag pattern on the surface of the protein's ice-binding site (IBS). While the three AFP isoforms shared the water network pattern, the network on TisAFP7 IBS was not extensive, which was likely related to its intermediate activity. Analysis of the TisAFP7 crystal structure also revealed the presence of additional water molecules that form a ring-like network surrounding the hydrophobic side chain of a crucial IBS phenylalanine, which might be responsible for the increased adsorption of AFP molecule onto the basal plane. Based on these observations, we propose that the extended water network and hydrophobic hydration at IBS together determine the TisAFP activity. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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13. Hybrid Caption Including Formula or Figure for Deaf and Hard-of-Hearing Students.
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Wakatsuki, Daisuke, Arai, Tatsuya, and Shionome, Takeaki
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HEARING impaired children ,CHILDREN with disabilities ,MATHEMATICS ,EQUATIONS ,TEACHERS - Abstract
Captions, which are used as a means of information support for deaf and hard-of-hearing students, are usually presented only in text form. Therefore, when mathematical equations and figures are frequently used in a classroom, the captions will show several demonstrative words such as "this equation" or "that figure." As there is a delay between the teacher's utterance and the display of the captions sometimes, it is difficult for users to grasp the target of these demonstrative words accurately. In this study, we prepared hybrid captions with mathematical equations and figures and verified their effectiveness via a comparison with conventional text-only captions. The results suggested that the hybrid captions were at least as effective as the conventional captions at helping the students understand the lesson contents. A subjective evaluation with a questionnaire survey also showed that the experimental participants found the hybrid captions to be acceptable without any discomfort. Furthermore, there was no difference in the number of eye movements of the participants during the experiment, suggesting that the physical load was similar for both types of captions. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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14. Bevacizumab-associated glomerular microangiopathy that occurred after postoperative chemotherapy for ovarian cancer.
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Morimoto, Madoka, Arai, Tatsuya, Matsuura, Motoo, and Ono, Yuko
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- 2021
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15. Time series analysis of separation for vegetation management around power lines using UAV photogrammetry.
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Arai, Tatsuya, Kageyama, Yoichi, Ishizawa, Chikako, Shirai, Hikaru, Ishii, Masaki, Suehiro, Kenji, Takahashi, Nobuaki, Kobayashi, Takuya, Yaguchi, Shohei, Sato, Toshiharu, Sawata, Michihiro, and Chiba, Tatsuki
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ELECTRIC lines ,TIME series analysis ,VEGETATION management ,REMOTE sensing - Abstract
In recent years, several studies have been performed on methods of investigating the periphery of power lines using remote sensing. Among the survey methods using unmanned aerial vehicles (UAVs), those methods are being studied wherein the environment around power lines is photographed by a UAV, and separation measurements are performed by reconstructing the three‐dimensional (3D) point cloud between power lines and the vegetation. Such methods currently rely on reconstructing the power line, making it necessary to acquire images from a position close to the power line. However, by using information available from the power company on the position and structure of pylons and the sag of power lines, it is possible to calculate the position of the power line without 3D reconstruction. In this study, time series management of vegetation around power lines was enabled using the data obtained by UAVs at different times and information on the transmission equipment. © 2020 Institute of Electrical Engineers of Japan. Published by Wiley Periodicals LLC. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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16. Clinically mild encephalitis/encephalopathy with reversible splenial lesion (MERS) associated with Mycoplasma pneumoniae pneumonia: An adult case and review of the literature.
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Sadohara, Michito, Arai, Tatsuya, and Matsuura, Kou
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MYCOPLASMA pneumoniae ,ENCEPHALITIS ,LITERATURE reviews ,ADULTS ,ANTIBIOTICS ,MYCOPLASMA pneumoniae infections - Abstract
Mycoplasma pneumonia with mild CNS involvements should be considered of MERS, even in adult. From the case series, splenial single lesions by MRI and prodromal fever with varied neurological manifestations recovered completely by antibiotics were seen. [ABSTRACT FROM AUTHOR]
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- 2020
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17. Accuracy of cardiac ablation catheter guidance by means of a single equivalent moving dipole inverse algorithm to identify sites of origin of cardiac electrical activation.
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Lv, Wener, Lee, Kichang, Arai, Tatsuya, Barrett, Conor D., Hasan, Maysun M., Hayward, Alison M., Marini, Robert P., Barley, Maya E., Galea, Anna, Hirschman, Gordon, Armoundas, Antonis A., and Cohen, Richard J.
- Abstract
We have developed a system that could potentially be used to identify the site of origin of ventricular tachycardia (VT) and to guide a catheter to that site to deliver radio-frequency ablation therapy. This system employs the Inverse Solution Guidance Algorithm based upon Single Equivalent Moving Dipole (SEMD) localization method. The system was evaluated in in vivo swine experiments. Arrays consisting of 9 or 16 bipolar epicardial electrodes and an additional mid-myocardial pacing lead were sutured to each ventricle. Focal tachycardia was simulated by applying pacing pulses to each epicardial electrode at multiple pacing rates during breath hold at the end-expiration phase. Surface potentials were recorded from 64 surface electrodes and then analyzed using the SEMD method to localize the position of the pacing electrodes. We found a close correlation between the locations of the pacing electrodes as measured in computational and real spaces. The reproducibility error of the SEMD estimation of electrode location was 0.21 ± 0.07 cm. The vectors between every pair of bipolar electrodes were computed in computational and real spaces. At 120 bpm, the lengths of the vectors in the computational and real space had a 95% correlation. Computational space vectors were used in catheter guidance simulations which showed that this method could reduce the distance between the real space locations of the emulated catheter tip and the emulated arrhythmia origin site by approximately 72% with each movement. We have demonstrated the feasibility of using our system to guide a catheter to the site of the emulated VT origin. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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18. Comparison of cardiovascular parameter estimation methods using swine data.
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Arai, Tatsuya, Lee, Kichang, and Cohen, Richard J.
- Abstract
In this study, new and existing methods of estimating stroke volume, cardiac output and total peripheral resistance from analysis of the arterial blood pressure waveform were tested over a wide range of conditions. These pulse contour analysis methods (PCMs) were applied to data obtained in six swine during infusion of volume, phenylephrine, dobutamine, isoproterenol, esmolol and nitroglycerine as well as during progressive hemorrhage. Performance of PCMs was compared using true end-ejection pressures as well as estimated end-ejection pressures. There was considerable overlap in the accuracies of the PCMs when using true end-ejection measures. However, for perhaps the most clinically relevant condition, where radial artery pressure is the input, only Wesseling's Corrected Impedance method and the Kouchoukos Correction method achieved statistically superior results. We introduced a method of estimating end-ejection by determining when the systolic pressure dropped to a value equal to the sum of the end-diastolic pressure plus a fraction of the pulse pressure. The most accurate estimation of end-ejection was obtained when that fraction was set to 60% for the central arterial pressure and to 50% for the femoral and radial arterial pressures. When the estimated end-ejection measures were used for the PCMs that depend on end-ejection measures and when radial artery pressure was used as the input, only Wesseling's Corrected Impedance method and the modified Herd's method achieved statistically superior results. This study provides a systematic comparison of multiple PCMs' ability to estimate stroke volume, cardiac output, and total peripheral resistance and introduces a new method of estimating end-systole. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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19. Regional pulmonary perfusion patterns in humans are not significantly altered by inspiratory hypercapnia.
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Asadi, Amran K., Sá, Rui Carlos, Arai, Tatsuya J., Theilmann, Rebecca J., Hopkins, Susan R., Buxton, Richard B., and Prisk, G. Kim
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ISOLATION perfusion ,HYPERCAPNIA ,BLOOD flow ,HUMAN beings - Abstract
Pulmonary vascular tone is known to be sensitive to both local alveolar PO
2 and PCO2 . Although the effects of hypoxia are well studied, the hypercapnic response is relatively less understood. We assessed changes in regional pulmonary blood flow in humans in response to hypercapnia using previously developed MRI techniques. Dynamic measures of blood flow were made in a single slice of the right lung of seven healthy volunteers following a block-stimulus paradigm (baseline, challenge, recovery), with CO2 added to inspired gas during the challenge block to effect a 7-Torr increase in end-tidal CO2 . Effects of hypercapnia on blood flow were evaluated based on changes in spatiotemporal variability (fluctuation dispersion, FD) and in regional perfusion patterns in comparison to hypoxic effects previously studied. Hypercapnia increased FD 2.5% from baseline (relative to control), which was not statistically significant (P = 0.07). Regional perfusion patterns were not significantly changed as a result of increased FICO2 (P = 0.90). Reanalysis of previously collected data using a similar protocol but with the physiological challenge replaced by decreased FIO2 (FIO2 = 0.125) showed marked flow redistribution (P = 0.01) with the suggestion of a gravitational pattern, demonstrating hypoxia has the ability to affect regional change with a global stimulus. Taken together, these data indicate that hypercapnia of this magnitude does not lead to appreciable changes in the distribution of pulmonary perfusion, and that this may represent an interesting distinction between the hypoxic and hypercapnic regulatory response. [ABSTRACT FROM AUTHOR]- Published
- 2019
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20. Oxygen‐sensitive MRI assessment of tumor response to hypoxic gas breathing challenge.
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Yang, Donghan M., Arai, Tatsuya J., Campbell, James W., Gerberich, Jenifer L., Zhou, Heling, and Mason, Ralph P.
- Subjects
BREAST tumors ,OXYGEN in the blood ,TUMORS ,GASES ,DEOXYHEMOGLOBIN - Abstract
Oxygen‐sensitive MRI has been extensively used to investigate tumor oxygenation based on the response (R2* and/or R1) to a gas breathing challenge. Most studies have reported response to hyperoxic gas indicating potential biomarkers of hypoxia. Few studies have examined hypoxic gas breathing and we have now evaluated acute dynamic changes in rat breast tumors. Rats bearing syngeneic subcutaneous (n = 15) or orthotopic (n = 7) 13762NF breast tumors were exposed to a 16% O2 gas breathing challenge and monitored using blood oxygen level dependent (BOLD) R2* and tissue oxygen level dependent (TOLD) T1‐weighted measurements at 4.7 T. As a control, we used a traditional hyperoxic gas breathing challenge with 100% O2 on a subset of the subcutaneous tumor bearing rats (n = 6). Tumor subregions identified as responsive on the basis of R2* dynamics coincided with the viable tumor area as judged by subsequent H&E staining. As expected, R2* decreased and T1‐weighted signal increased in response to 100% O2 breathing challenge. Meanwhile, 16% O2 breathing elicited an increase in R2*, but divergent response (increase or decrease) in T1‐weighted signal. The T1‐weighted signal increase may signify a dominating BOLD effect triggered by 16% O2 in the relatively more hypoxic tumors, whereby the influence of increased paramagnetic deoxyhemoglobin outweighs decreased pO2. The results emphasize the importance of combined BOLD and TOLD measurements for the correct interpretation of tumor oxygenation properties. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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21. Ice‐binding proteins from the fungus Antarctomyces psychrotrophicus possibly originate from two different bacteria through horizontal gene transfer.
- Author
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Arai, Tatsuya, Fukami, Daichi, Hoshino, Tamotsu, Kondo, Hidemasa, and Tsuda, Sakae
- Subjects
GENETIC transformation ,MICROORGANISMS ,BASIDIOMYCOTA ,BIOLOGICAL evolution ,ANTISENSE DNA - Abstract
Various microbes, including fungi and bacteria, that live in cold environments produce ice‐binding proteins (IBPs) that protect them from freezing. Ascomycota and Basidiomycota are two major phyla of fungi, and Antarctomyces psychrotrophicus is currently designated as the sole ascomycete that produces IBP (AnpIBP). However, its complete amino acid sequence, ice‐binding property, and evolutionary history have not yet been clarified. Here, we determined the peptide sequences of three new AnpIBP isoforms by total cDNA analysis and compared them with those of other microbial IBPs. The AnpIBP isoforms and ascomycete‐putative IBPs were found to be phylogenetically close to the bacterial ones but far from the basidiomycete ones, which is supported by the higher sequence identities to bacterial IBPs than basidiomycete IBPs, although ascomycetes are phylogenetically distant from bacteria. In addition, two of the isoforms of AnpIBP share low sequence identity and are not close in the phylogenetic tree. It is hence presumable that these two AnpIBP isoforms were independently acquired from different bacteria through horizontal gene transfer (HGT), which implies that ascomycetes and bacteria frequently exchange their IBP genes. The non‐colligative freezing‐point depression ability of AnpIBP was not very high, whereas it exhibited significant abilities of ice recrystallization inhibition, ice shaping, and cryo‐protection against freeze–thaw cycles even at submicromolar concentrations. These results suggest that HGT is crucial for the cold‐adaptive evolution of ascomycetes, and their IBPs offer freeze resistance to organisms to enable them to inhabit the icy environments of Antarctica. Databases: Nucleotide sequence data are available in the DDBJ database under the accession numbers LC378707, LC378707, LC378707 for AnpIBP1a, AnpIBP1b, AnpIBP2, respectively. Ice‐binding proteins (IBPs) are cryoprotective polypeptides produced by various cold‐adapted microbes, such as bacteria and fungi. We identified two IBP genes from an Antarctic fungus, Antarctomyces psychrotrophicus. Phylogenetic analysis revealed that these two genes were possibly acquired from two different bacteria through horizontal gene transfer, which suggests that IBP genes are frequently exchanged between different microbes in Antarctica. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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22. Comparison of quantitative multiple-breath specific ventilation imaging using colocalized 2D oxygen-enhanced MRI and hyperpolarized 3 He MRI.
- Author
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Arai, Tatsuya J., Horn, Felix C., Sá, Rui Carlos, Rao, Madhwesha R., Collier, Guilhem J., Theilmann, Rebecca J., Prisk, G. Kim, and Wild, Jim M.
- Abstract
Two magnetic resonance specific ventilation imaging (SVI) techniques, namely, oxygen-enhanced proton (OE-
1 H) and hyperpolarized3 He (HP-3 He), were compared in eight healthy supine subjects [age 32 (6) yr]. An in-house radio frequency coil array for1 H configured with the3 He transmit-receive coil in situ enabled acquisition of SVI data from two nuclei from the same slice without repositioning the subjects. After 3 × 3 voxel downsampling to account for spatial registration errors between the two SV images, the voxel-by-voxel correlation coefficient of two SV maps ranged from 0.11 to 0.63 [0.46 mean (0.17 SD); P < 0.05]. Several indexes were analyzed and compared from the tidal volume-matched SV maps: the mean of SV log-normal distribution (SVmean), the standard deviation of the distribution as a measure of SV heterogeneity (SVwidth), and the gravitational gradient (SVslope). There were no significant differences in SVmean [OE-1 H: 0.28 (0.08) and HP-3 He: 0.32 (0.14)], SVwidths [OE-1 H: 0.28 (0.08) and HP-3 He: 0.27 (0.10)], and SVslopes [OE-1 H: -0.016 (0.006) cm-1 and HP-3 He: -0.013 (0.007) cm-1 ]. Despite the statistical similarities of the population averages, Bland-Altman analysis demonstrated large individual intertechnique variability. SDs of differences in these indexes were 42% (SVmean), 46% (SVwidths), and 62% (SVslopes) of their corresponding overall mean values. The present study showed that two independent, spatially coregistered, SVI techniques presented a moderate positive voxel-by-voxel correlation. Population averages of SVmean, SVwidth, and SVslope were in close agreement. However, the lack of agreement when the data sets were analyzed individually might indicate some fundamental mechanistic differences between the techniques. NEW & NOTEWORTHY To the best of our knowledge, this is the first cross-comparison of two different specific ventilation (SV) MRI techniques in the human lung (i.e., oxygen-enhanced proton and hyperpolarized3 He). The present study showed that two types of spatially coregistered SV images presented a modest positive correlation. The two techniques also yielded similar population averages of SV indexes such as log-normal mean, SV heterogeneity, and the gravitational slope, albeit with some intersubject variability. [ABSTRACT FROM AUTHOR]- Published
- 2018
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23. MR-CBCT image-guided system for radiotherapy of orthotopic rat prostate tumors.
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Chiu, Tsuicheng D., Arai, Tatsuya J., Campbell III, James, Jiang, Steve B., Mason, Ralph P., and Stojadinovic, Strahinja
- Subjects
PROSTATE tumors ,CANCER radiotherapy ,CONE beam computed tomography ,MAGNETIC resonance imaging of cancer ,IMAGING phantoms - Abstract
Multi-modality image-guided radiotherapy is the standard of care in contemporary cancer management; however, it is not common in preclinical settings due to both hardware and software limitations. Soft tissue lesions, such as orthotopic prostate tumors, are difficult to identify using cone beam computed tomography (CBCT) imaging alone. In this study, we characterized a research magnetic resonance (MR) scanner for preclinical studies and created a protocol for combined MR-CBCT image-guided small animal radiotherapy. Two in-house dual-modality, MR and CBCT compatible, phantoms were designed and manufactured using 3D printing technology. The phantoms were used for quality assurance tests and to facilitate end-to-end testing for combined preclinical MR and CBCT based treatment planning. MR and CBCT images of the phantoms were acquired utilizing a Varian 4.7 T scanner and XRad-225Cx irradiator, respectively. The geometry distortion was assessed by comparing MR images to phantom blueprints and CBCT. The corrected MR scans were co-registered with CBCT and subsequently used for treatment planning. The fidelity of 3D printed phantoms compared to the blueprint design yielded favorable agreement as verified with the CBCT measurements. The geometric distortion, which varied between -5% and 11% throughout the scanning volume, was substantially reduced to within 0.4% after correction. The distortion free MR images were co-registered with the corresponding CBCT images and imported into a commercial treatment planning software SmART Plan. The planning target volume (PTV) was on average 19% smaller when contoured on the corrected MR-CBCT images relative to raw images without distortion correction. An MR-CBCT based preclinical workflow was successfully designed and implemented for small animal radiotherapy. Combined MR-CBCT image-guided radiotherapy for preclinical research potentially delivers enhanced relevance to human radiotherapy for various disease sites. This novel protocol is wide-ranging and not limited to the orthotopic prostate tumor study presented in the study. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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24. Visualizing Intramolecular Dynamics of Membrane Proteins.
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Ohkubo, Tatsunari, Shiina, Takaaki, Kawaguchi, Kayoko, Sasaki, Daisuke, Inamasu, Rena, Yang, Yue, Li, Zhuoqi, Taninaka, Keizaburo, Sakaguchi, Masaki, Fujimura, Shoko, Sekiguchi, Hiroshi, Kuramochi, Masahiro, Arai, Tatsuya, Tsuda, Sakae, Sasaki, Yuji C., and Mio, Kazuhiro
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MEMBRANE proteins ,FREE electron lasers ,CHEMICAL processes ,OPTICAL measurements ,ATOMIC force microscopy ,INTRAMOLECULAR proton transfer reactions ,BIOMOLECULES - Abstract
Membrane proteins play important roles in biological functions, with accompanying allosteric structure changes. Understanding intramolecular dynamics helps elucidate catalytic mechanisms and develop new drugs. In contrast to the various technologies for structural analysis, methods for analyzing intramolecular dynamics are limited. Single-molecule measurements using optical microscopy have been widely used for kinetic analysis. Recently, improvements in detectors and image analysis technology have made it possible to use single-molecule determination methods using X-rays and electron beams, such as diffracted X-ray tracking (DXT), X-ray free electron laser (XFEL) imaging, and cryo-electron microscopy (cryo-EM). High-speed atomic force microscopy (HS-AFM) is a scanning probe microscope that can capture the structural dynamics of biomolecules in real time at the single-molecule level. Time-resolved techniques also facilitate an understanding of real-time intramolecular processes during chemical reactions. In this review, recent advances in membrane protein dynamics visualization techniques were presented. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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25. Devaney's and Li-Yorke's Chaos in Uniform Spaces.
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Arai, Tatsuya
- Subjects
UNIFORM spaces ,ABELIAN groups ,MATHEMATICS ,NONABELIAN groups ,QUASIUNIFORM spaces - Abstract
A definition of chaos in the sense of Li-Yorke is given for an action of a group on a uniform space, and it is shown that if a continuous action of an Abelian group G on a second countable Baire Hausdorff uniform space X without isolated points is chaotic in the sense of Devaney, then it is also chaotic in the sense of Li-Yorke. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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26. Measurement of the distribution of ventilation-perfusion ratios in the human lung with proton MRI: comparison with the multiple inert-gas elimination technique.
- Author
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Carlos Sá, Rui, Henderson, A. Cortney, Simonson, Tatum, Arai, Tatsuya J., Wagner, Harrieth, Theilmann, Rebecca J., Wagner, Peter D., Prisk, G. Kim, and Hopkins, Susan R.
- Abstract
We have developed a novel functional proton magnetic resonance imaging (MRI) technique to measure regional ventilation-perfusion (V̇
A /Q̇) ratio in the lung. We conducted a comparison study of this technique in healthy subjects (n = 7, age = 42 ± 16 yr, Forced expiratory volume in 1 s = 94% predicted), by comparing data measured using MRI to that obtained from the multiple inert gas elimination technique (MIGET). Regional ventilation measured in a sagittal lung slice using Specific Ventilation Imaging was combined with proton density measured using a fast gradient-echo sequence to calculate regional alveolar ventilation, registered with perfusion images acquired using arterial spin labeling, and divided on a voxel-by-voxel basis to obtain regional V̇A /Q̇ ratio. LogSDV̇ and LogSDQ̇, measures of heterogeneity derived from the standard deviation (log scale) of the ventilation and perfusion vs. V̇A /Q̇ ratio histograms respectively, were calculated. On a separate day, subjects underwent study with MIGET and LogSDV̇ and LogSDQ̇ were calculated from MIGET data using the 50-compartment model. MIGET LogSDV̇ and LogSDQ̇ were normal in all subjects. LogSDQ̇ was highly correlated between MRI and MIGET (R = 0.89, P = 0.007); the intercept was not significantly different from zero (−0.062, P = 0.65) and the slope did not significantly differ from identity (1.29, P = 0.34). MIGET and MRI measures of LogSDV̇ were well correlated (R = 0.83, P = 0.02); the intercept differed from zero (0.20, P = 0.04) and the slope deviated from the line of identity (0.52, P = 0.01). We conclude that in normal subjects, there is a reasonable agreement between MIGET measures of heterogeneity and those from proton MRI measured in a single slice of lung. NEW & NOTEWORTHY We report a comparison of a new proton MRI technique to measure regional V̇A /Q̇ ratio against the multiple inert gas elimination technique (MIGET). The study reports good relationships between measures of heterogeneity derived from MIGET and those derived from MRI. Although currently limited to a single slice acquisition, these data suggest that single sagittal slice measures of V̇A /Q̇ ratio provide an adequate means to assess heterogeneity in the normal lung. [ABSTRACT FROM AUTHOR]- Published
- 2017
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27. The effect of lung deformation on the spatial distribution of pulmonary blood flow.
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Arai, Tatsuya J., Theilmann, Rebecca J., Sá, Rui Carlos, Villongco, Michael T., and Hopkins, Susan R.
- Subjects
PULMONARY blood vessels ,LUNG volume ,MAGNETIC resonance imaging ,IMAGE registration ,HYDROSTATIC pressure - Abstract
Key points Pulmonary perfusion measurement using magnetic resonance imaging combined with deformable image registration enabled us to quantify the change in the spatial distribution of pulmonary perfusion at different lung volumes., The current study elucidated the effects of tidal volume lung inflation [functional residual capacity (FRC) + 500 ml and FRC + 1 litre] on the change in pulmonary perfusion distribution., Changes in hydrostatic pressure distribution as well as transmural pressure distribution due to the change in lung height with tidal volume inflation are probably bigger contributors to the redistribution of pulmonary perfusion than the changes in pulmonary vasculature resistance caused by lung tissue stretch., Abstract Tidal volume lung inflation results in structural changes in the pulmonary circulation, potentially affecting pulmonary perfusion. We hypothesized that perfusion is recruited to regions receiving the greatest deformation from a tidal breath, thus ensuring ventilation-perfusion matching. Density-normalized perfusion (DNP) magnetic resonance imaging data were obtained in healthy subjects ( n = 7) in the right lung at functional residual capacity (FRC), FRC+500 ml, and FRC+1.0 l. Using deformable image registration, the displacement of a sagittal lung slice acquired at FRC to the larger volumes was calculated. Registered DNP images were normalized by the mean to estimate perfusion redistribution (nDNP). Data were evaluated across gravitational regions (dependent, middle, non-dependent) and by lobes (upper, RUL; middle, RML; lower, RLL). Lung inflation did not alter mean DNP within the slice ( P = 0.10). The greatest expansion was seen in the dependent region ( P < 0.0001: dependent vs non-dependent, P < 0.0001: dependent vs middle) and RLL ( P = 0.0015: RLL vs RUL, P < 0.0001: RLL vs RML). Neither nDNP recruitment to RLL [+500 ml = −0.047(0.145), +1 litre = 0.018(0.096)] nor to dependent lung [+500 ml = −0.058(0.126), +1 litre = −0.023(0.106)] were found. Instead, redistribution was seen in decreased nDNP in the non-dependent [+500 ml = −0.075(0.152), +1 litre = −0.137(0.167)) and increased nDNP in the gravitational middle lung [+500 ml = 0.098(0.058), +1 litre = 0.093(0.081)] ( P = 0.01). However, there was no significant lobar redistribution ( P < 0.89). Contrary to our hypothesis, based on the comparison between gravitational and lobar perfusion data, perfusion was not redistributed to the regions of the most inflation. This suggests that either changes in hydrostatic pressure or transmural pressure distribution in the gravitational direction are implicated in the redistribution of perfusion away from the non-dependent lung. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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28. Characterizing spatiotemporal information loss in sparse-sampling-based dynamic MRI for monitoring respiration-induced tumor motion in radiotherapy.
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Arai, Tatsuya J., Nofiele, Joris, Madhuranthakam, Ananth J., Yuan, Qing, Pedrosa, Ivan, Chopra, Rajiv, and Sawant, Amit
- Subjects
SPATIOTEMPORAL processes ,TUMORS ,CANCER radiotherapy ,COMPRESSED sensing ,IMAGE reconstruction ,STANDARD deviations ,MAGNETIC resonance imaging - Abstract
Purpose: Sparse-sampling and reconstruction techniques represent an attractive strategy to achieve faster image acquisition speeds, while maintaining adequate spatial resolution and signal-to-noise ratio in rapid magnetic resonance imaging (MRI). The authors investigate the use of one such sequence, broad-use linear acquisition speed-up technique (k-t BLAST) in monitoring tumor motion for thoracic and abdominal radiotherapy and examine the potential trade-off between increased sparsification (to increase imaging speed) and the potential loss of "true" information due to greater reliance on a priori information. Methods: Lung tumor motion trajectories in the superior–inferior direction, previously recorded from ten lung cancer patients, were replayed using a motion phantom module driven by an MRI-compatible motion platform. Eppendorf test tubes filled with water which serve as fiducial markers were placed in the phantom. The modeled rigid and deformable motions were collected in a coronal image slice using balanced fast field echo in conjunction with k-t BLAST. Root mean square (RMS) error was used as a metric of spatial accuracy as measured trajectories were compared to input data. The loss of spatial information was characterized for progressively increasing acceleration factor from 1 to 16; the resultant sampling frequency was increased approximately from 2.5 to 19 Hz when the principal direction of the motion was set along frequency encoding direction. In addition to the phantom study, respiration-induced tumor motions were captured from two patients (kidney tumor and lung tumor) at 13 Hz over 49 s to demonstrate the impact of high speed motion monitoring over multiple breathing cycles. For each subject, the authors compared the tumor centroid trajectory as well as the deformable motion during free breathing. Results: In the rigid and deformable phantom studies, the RMS error of target tracking at the acquisition speed of 19 Hz was approximately 0.3–0.4 mm, which was smaller than the reconstructed pixel resolution of 0.67 mm. In the patient study, the dynamic 2D MRI enabled the monitoring of cycle-to-cycle respiratory variability present in the tumor position. It was seen that the range of centroid motion as well as the area covered due to target motion during each individual respiratory cycle was underestimated compared to the entire motion range observed over multiple breathing cycles. Conclusions: The authors' initial results demonstrate that sparse-sampling- and reconstructionbased dynamic MRI can be used to achieve adequate image acquisition speeds without significant information loss for the task of radiotherapy guidance. Such monitoring can yield spatial and temporal information superior to conventional offline and online motion capture methods used in thoracic and abdominal radiotherapy. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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29. Development of a Learning Support System for Class Structure Mapping Based on Viewpoint.
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Arai, Tatsuya, Tomoto, Takahito, and Akakura, Takako
- Published
- 2015
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30. Measurement of Crack Tip Displacement Field in Desiccating Paste.
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Arai, Tatsuya and Sakaue, Kenichi
- Published
- 2015
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31. A continuous surface reconstruction method on point cloud captured from a 3D surface photogrammetry system.
- Author
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Wenyang Liu, Yam Cheung, Pouya Sabouri, Arai, Tatsuya J., Sawant, Amit, and Dan Ruan
- Subjects
SURFACE reconstruction ,THREE-dimensional imaging ,PHOTOGRAMMETRY ,IMAGE registration ,IMAGE reconstruction ,IMAGE representation - Abstract
Purpose: To accurately and efficiently reconstruct a continuous surface from noisy point clouds captured by a surface photogrammetry system (VisionRT). Methods: The authors have developed a level-set based surface reconstruction method on point clouds captured by a surface photogrammetry system (VisionRT). The proposed method reconstructs an implicit and continuous representation of the underlying patient surface by optimizing a regularized fitting energy, offering extra robustness to noise and missing measurements. By contrast to explicit/discrete meshing-type schemes, their continuous representation is particularly advantageous for subsequent surface registration and motion tracking by eliminating the need for maintaining explicit point correspondences as in discrete models. The authors solve the proposed method with an efficient narrowband evolving scheme. The authors evaluated the proposed method on both phantom and human subject data with two sets of complementary experiments. In the first set of experiment, the authors generated a series of surfaces each with different black patches placed on one chest phantom. The resulting VisionRT measurements from the patched area had different degree of noise and missing levels, since VisionRT has difficulties in detecting dark surfaces. The authors applied the proposed method to point clouds acquired under these different configurations, and quantitatively evaluated reconstructed surfaces by comparing against a high-quality reference surface with respect to root mean squared error (RMSE). In the second set of experiment, the authors applied their method to 100 clinical point clouds acquired from one human subject. In the absence of ground-truth, the authors qualitatively validated reconstructed surfaces by comparing the local geometry, specifically mean curvature distributions, against that of the surface extracted from a high-quality CT obtained from the same patient. Results: On phantom point clouds, their method achieved submillimeter reconstruction RMSE under different configurations, demonstrating quantitatively the faith of the proposed method in preserving local structural properties of the underlying surface in the presence of noise and missing measurements, and its robustness toward variations of such characteristics. On point clouds from the human subject, the proposed method successfully reconstructed all patient surfaces, filling regions where raw point coordinate readings were missing. Within two comparable regions of interest in the chest area, similar mean curvature distributions were acquired from both their reconstructed surface and CT surface, with mean and standard deviation of (μ
recon = -2.7×10-3 mm-1 ,σrecon = 7.0×10-3 mm-1 ) and (μCT = -2.5×10-3 mm-1 ,σCT = 5.3×10-3 mm-1 ), respectively. The agreement of local geometry properties between the reconstructed surfaces and the CT surface demonstrated the ability of the proposed method in faithfully representing the underlying patient surface. Conclusions: The authors have integrated and developed an accurate level-set based continuous surface reconstruction method on point clouds acquired by a 3D surface photogrammetry system. The proposed method has generated a continuous representation of the underlying phantom and patient surfaces with good robustness against noise and missing measurements. It serves as an important first step for further development of motion tracking methods during radiotherapy. [ABSTRACT FROM AUTHOR]- Published
- 2015
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32. Development of a Learning Support System for Source Code Reading Comprehension.
- Author
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Arai, Tatsuya, Kanamori, Haruki, Tomoto, Takahito, Kometani, Yusuke, and Akakura, Takako
- Published
- 2014
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33. Affine transformation registers small scale lung deformation.
- Author
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Arai, Tatsuya J., Villongco, Christopher T., Villongco, Michael T., Hopkins, Susan R., and Theilmann, Rebecca J.
- Abstract
To evaluate the nature of small scale lung deformation between multiple pulmonary magnetic resonance images, two different kinematic intensity based image registration techniques: affine and bicubic Hermite interpolation were tested. The affine method estimates uniformly distributed deformation metrics throughout the lung. The bicubic Hermite method allows the expression of heterogeneously distributed deformation metrics such as Lagrangian strain. A cardiac triggered inversion recovery technique was used to obtain 10 sequential images of pulmonary vessel structure in a sagittal plane in the right lung at FRC in 4 healthy subjects (Age: 28.5(6.2)). One image was used as the reference image, and the remaining images (target images) were warped onto the reference image using both image registration techniques. The normalized correlation between the reference and the transformed target images within the lung domain was used as a cost function for optimization, and the root mean square (RMS) of image intensity difference was used to evaluate the quality of the registration. Both image registration techniques significantly improved the RMS compared with non-registered target images (p= 0.04). The spatial mean (µE) and standard deviation (σE) of Lagrangian strain were computed based on the spatial distribution of lung deformation approximated by the bicubic Hermite method, and were measured on the order of 10−3 or less, which is virtually negligible. As a result, small scale lung deformation between FRC lung volumes is spatially uniform, and can be simply characterized by affine deformation even though the bicubic Hermite method is capable of expressing complicated spatial patterns of lung deformation. [ABSTRACT FROM PUBLISHER]
- Published
- 2012
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34. Model Checking Approach to Real-Time Aspects of Denial-of-Service Attack.
- Author
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Arai, Tatsuya and Nishizaki, Shin-ya
- Published
- 2012
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35. The heterogeneity of regional specific ventilation is unchanged following heavy exercise in athletes.
- Author
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Tedjasaputra, Vince, Chen, William T., Sá, Rui Carlos, Arai, Tatsuya J., Holverda, Sebastiaan, Prisk, G. Kim, Hopkins, Susan R., Theilmann, Rebecca J., Wagner, Peter D., and Davis, Christopher K.
- Subjects
MAGNETIC resonance imaging ,PULMONARY gas exchange ,VENTILATION-perfusion ratio - Abstract
Heavy exercise increases ventilation-perfusion mismatch and decreases pulmonary gas exchange efficiency. Previous work using magnetic resonance imaging (MRI) arterial spin labeling in athletes has shown that, after 45 min of heavy exercise, the spatial heterogeneity of pulmonary blood flow was increased in recovery. We hypothesized that the heterogeneity of regional specific ventilation (SV, the local tidal volume over functional residual capacity ratio) would also be increased following sustained exercise, consistent with the previously documented changes in blood flow heterogeneity. Trained subjects (n = 6, maximal O2 consumption = 61 ± 7 ml·kg-1·min-1) cycled 45 min at their individually determined ventilatory threshold. Oxygen-enhanced MRI was used to quantify SV in a sagittal slice of the right lung in supine posture pre- (preexercise) and 15- and 60-min postexercise. Arterial spin labeling was used to measure pulmonary blood flow in the same slice bracketing the SV measures. Heterogeneity of SV and blood flow were quantified by relative dispersion (RD = SD/mean). The alveolar-arterial oxygen difference was increased during exercise, 23.3 ± 5.3 Torr, compared with rest, 6.3 ± 3.7 Torr, indicating a gas exchange impairment during exercise. No significant change in RD of SV was seen after exercise: preexercise 0.78 ± 0.15, 15 min postexercise 0.81 ± 0.13, 60 min postexercise 0.78 ± 0.08 (P = 0.5). The RD of blood flow increased significantly postexercise: preexercise 1.00 ± 0.12, 15 min postexercise 1.15 ± 0.10, 45 min postexercise 1.10 ± 0.10, 60 min postexercise 1.19 ± 0.11, 90 min postexercise 1.11 ± 0.12 (P < 0.005). The lack of a significant change in RD of SV postexercise, despite an increase in the RD of blood flow, suggests that airways may be less susceptible to the effects of exercise than blood vessels. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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36. High-fat diet intake accelerates aging, increases expression of Hsd11b1, and promotes lipid accumulation in liver of SAMP10 mouse.
- Author
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Honma, Taro, Shinohara, Nahoko, Ito, Junya, Kijima, Ryo, Sugawara, Soko, Arai, Tatsuya, Tsuduki, Tsuyoshi, and Ikeda, Ikuo
- Abstract
An understanding of the mechanisms of aging is important for prevention of age-related diseases. In this study, we examined age-dependent changes in lipid metabolism in the senescence-accelerated mouse (SAM)P10 fed a high-fat diet to investigate the effects of high-fat intake and aging. Tissue weights and biological parameters in plasma and liver were measured at 6 and 12 months old in SAMP10 mice fed a high-fat diet. These mice showed marked increases in liver triacylglycerol and plasma insulin levels with intake of a high-fat diet intake and aging. Lipid accumulation in hepatocytes and morphological aberrations and hypertrophy in pancreatic islets were also promoted by a high-fat diet and aging. To investigate the underlying mechanisms, the activities and mRNA levels for enzymes associated with lipid metabolism in liver were measured. The results indicated that the lipid metabolic system was activated by a high-fat diet and aging. Liver mRNA level for hydroxysteroid 11-beta dehydrogenase 1 (Hsd11b1), which exhibit age-dependent increases and promote insulin secretion, was also markedly increased. These results suggest that a high-fat diet accelerated aging in the liver of SAMP10 mice by increasing liver mRNA level for Hsd11b1, increasing insulin secretion, and promoting lipid accumulation in the liver. [ABSTRACT FROM AUTHOR]
- Published
- 2012
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37. Measuring lung water: Ex vivo validation of multi-image gradient echo MRI.
- Author
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Holverda, Sebastiaan, Theilmann, Rebecca J., Sá, Rui C., Arai, Tatsuya J., Hall, Evan T., Dubowitz, David J., Prisk, G. Kim, and Hopkins, Susan R.
- Abstract
Purpose: To validate a fast gradient echo sequence for rapid (9 s) quantitative imaging of lung water. Materials and Methods: Eleven excised pig lungs were imaged with a fast GRE sequence in triplicate, in the sagittal plane at 2 levels of inflation pressure (5 and 15 cm H [ABSTRACT FROM AUTHOR]
- Published
- 2011
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38. Vertical distribution of specific ventilation in normal supine humans measured by oxygen-enhanced proton MRI.
- Author
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Sá, Rui Carlos, Cronin, Matthew V., Henderson, A. Cortney, Holverda, Sebastiaan, Theilmann, Rebecca J., Arai, Tatsuya J., Dubowitz, David J., Hopkins, Susan R., Buxton, Richard B., and Prisk, G. Kim
- Subjects
MEDICAL imaging systems ,MAGNETIC resonance imaging ,NUCLEAR magnetic resonance ,PROTON magnetic resonance ,RESPIRATION - Abstract
Specific ventilation (SV) is the ratio of fresh gas entering a lung region divided by its end-expiratory volume. To quantify the vertical (gravitationally dependent) gradient of SV in eight healthy supine subjects, we implemented a novel proton magnetic resonance imaging (MRI) method. Oxygen is used as a contrast agent, which in solution changes the longitudinal relaxation time (T1) in lung tissue. Thus alterations in the MR signal resulting from the regional rise in O
2 concentration following a sudden change in inspired O2 reflect SV--lung units with higher SV reach a new equilibrium faster than those with lower SV. We acquired TI-weighted inversion recovery images of a sagittal slice of the supine right lung with a 1.5-T MRI system. Images were voluntarily respiratory gated at functional residual capacity; 20 images were acquired with the subject breathing air and 20 breathing 100% O2 , and this cycle was repeated five times. Expired tidal volume was measured simultaneously. The SV maps presented an average spatial fractal dimension of 1.13 ± 0.03. There was a vertical gradient in SV of 0.029 ± 0.012 cm-1 , with SV being highest in the dependent lung. Dividing the lung vertically into thirds showed a statistically significant difference in SV, with SV of 0.42 ± 0.14 (mean ± SD), 0.29 ± 0.10, and 0.24 ± 0.08 in the dependent, intermediate, and nondependent regions, respectively (all differences, P < 0.05). This vertical gradient in SV is consistent with the known gravitationally induced deformation of the lung resulting in greater lung expansion in the dependent lung with inspiration. This SV imaging technique can be used to quantify regional SV in the lung with proton MRI. [ABSTRACT FROM AUTHOR]- Published
- 2010
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39. Lung volume does not alter the distribution of pulmonary perfusion in dependent lung in supine humans.
- Author
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Hopkins, Susan R., Arai, Tatsuya J., Henderson, A. Cortney, Levin, David L., Buxton, Richard B., and Kim Prisk, G.
- Abstract
There is a gravitational influence on pulmonary perfusion, including in the most dependent lung, where perfusion is reduced, termed Zone 4. Studies using xenon-133 show Zone 4 behaviour, present in the dependent 4 cm at total lung capacity (TLC), affects the dependent 11 cm at functional residual capacity (FRC) and almost all the lung at residual volume (RV). These differences were ascribed to increased resistance in extra-alveolar vessels at low lung volumes although other mechanisms have been proposed. To further evaluate the behaviour of perfusion in dependent lung using a technique that directly measures pulmonary perfusion and corrects for tissue distribution by measuring regional proton density, seven healthy subjects (age = 38 ± 6 years, FEV= 104 ± 7% predicted) underwent magnetic resonance imaging in supine posture. Data were acquired in the right lung during breath-holds at RV, FRC and TLC. Arterial spin labelling quantified regional pulmonary perfusion, which was normalized for regional proton density measured using a fast low-angle shot technique. The height of the onset of Zone 4 behaviour was not different between lung volumes ( P= 0.23). There were no significant differences in perfusion (expressed as ml min g) between lung volumes in the gravitationally intermediate (RV = 8.9 ± 3.1, FRC = 8.1 ± 2.9, TLC = 7.4 ± 3.6; P= 0.26) and dependent lung (RV = 6.6 ± 2.4, FRC = 6.1 ± 2.1, TLC = 6.4 ± 2.6; P= 0.51). However, at TLC perfusion was significantly lower in non-dependent lung than at FRC or RV (3.6 ± 3.3, 7.7 ± 1.5, 7.9 ± 2.0, respectively; P < 0.001). These data suggest that the mechanism of the reduction in perfusion in dependent lung is unlikely to be a result of lung volume related increases in resistance in extra-alveolar vessels. In supine posture, the gravitational influence on perfusion is remarkably similar over most of the lung, irrespective of lung volume. The lung is subject to multiple influences that affect its function. In particular the effect of gravity has attracted considerable interest, especially as it relates to the distribution of blood flow. In the most gravitationally dependent part of the lung, blood flow is reduced, and this region is known as Zone 4. Zone 4 has been suggested to result from increased resistance in some of the blood vessels, and this effect is thought to be the smallest when the lung is at a high volume as the elastic structures of the lung hold the vessels open minimizing resistance. Using novel magnetic resonance imaging techniques to measure blood flow, this study shows that the distribution of blood flow in the dependent lung is unchanged when the lung volume is changed and suggests that the intrinsic structure of the vessels is a more likely explanation for this behaviour. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
40. Rapid intravenous infusion of 20 ml/kg saline does not impair resting pulmonary gas exchange in the healthy human lung.
- Author
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Prisk, G. Kim, Olfert, I. Mark, Arai, Tatsuya J., Wagner, Peter D., and Hopkins, Susan R.
- Subjects
PHYSIOLOGIC salines ,PULMONARY edema ,PULMONARY gas exchange ,INTRAVENOUS therapy ,SPIROMETRY ,PERFUSION ,HYPERVENTILATION ,STANDARD deviations - Abstract
Rapid infusion of intravenous saline, a model of pulmonary interstitial edema, alters the distribution of pulmonary perfusion, raises pulmonary capillary blood volume, and increases bronchial wall thickness in humans. We hypothesized that infusion would disrupt pulmonary gas exchange by increasing ventilation/perfusion (VA/Q) inequality as opposed to a diffusive impairment in O
2 exchange. Seven males (26 ± 3 yr; FEVI: 110 ± 16% predicted.) performed spirometry and had VA/Q mismatch measured using the multiple inert gas elimination technique, before and after 20 ml/kg iv of normal saline delivered in ∼30 mm. Infusion increased thoracic fluid content from transthoracic impedance by 12% (P < 0.0001) and left FVC unchanged but reduced expiratory flows (FEF25-75 falling from 5.1 ± 0.4 to 4.2 ± 0.4 l/s, P < 0.05). However, VA/Q mismatch as measured by the log standard deviation of the ventilation (LogSDV) and perfusion (LogSDQ) distributions remained unchanged; LogSDV: 0.40 ± 0.03 pre, 0.38 ± 0.04 post, NS; LogSDQ: 0.38 ± 0.03 pre, 0.37 ± 0.03 post, NS. There was no significant change in arterial Po2 (99 ± 2 pre, 99 ± 3 mmHg post, NS) but arterial PCO was decreased (38.7 ± 0.6 pre, 36.8 ± 1.2 mmHg post, P < 0.05). Thus, infusion compressed small airways and caused a mild degree of hyperventilation. There was no evidence for a diffusive limitation to O2 2 exchange, with the measured-predicted alveolar-arterial oxygen partial pressure difference being unaltered by infusion at FiO = 0.125 (4.3 ± 1.0 pre, 5.2 ± 1.0 post, NS). After infusion, the fraction of perfusion going to areas with VA/Q < 1 was increased when a subject breathed a hyperoxic gas mixture [0.72 ± 0.06 (Fi2 O = 0.21), 0.80 ± 0.06 (Fi2 O = 0.30), P <0.05] with similar effects on ventilation in the face of unchanged VA and Q. These results suggest active control of blood flow to regions of decreased ventilation during air breathing, thus minimizing the gas exchange consequences. [ABSTRACT FROM AUTHOR]2 - Published
- 2010
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41. Quantitative MRI measurement of lung density must account for the change in T(2) (*) with lung inflation.
- Author
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Theilmann RJ, Arai TJ, Samiee A, Dubowitz DJ, Hopkins SR, Buxton RB, Prisk GK, Theilmann, Rebecca J, Arai, Tatsuya J, Samiee, Ahsan, Dubowitz, David J, Hopkins, Susan R, Buxton, Richard B, and Prisk, G Kim
- Abstract
Purpose: To evaluate lung water density at three different levels of lung inflation in normal lungs using a fast gradient echo sequence developed for rapid imaging.Materials and Methods: Ten healthy volunteers were imaged with a fast gradient echo sequence that collects 12 images alternating between two closely spaced echoes in a single 9-s breathhold. Data were fit to a single exponential to determine lung water density and T(2) (*). Data were evaluated in a single imaging slice at total lung capacity (TLC), functional residual capacity (FRC), and residual volume (RV). Analysis of variance for repeated measures was used to statistically evaluate changes in T(2) (*) and lung water density across lung volumes, imaging plane, and spatial locations in the lung.Results: In normal subjects (n = 10), T(2) (*) (and [lung density/water density]) was 1.2 +/- 0.1 msec (0.10 +/- 0.02), 1.8 +/- 0.2 ms (0.25 +/- 0.04), and 2.0 +/- 0.2 msec (0.27 +/- 0.03) at TLC, FRC, and RV, respectively. Results also show that there is a considerable intersubject variability in the values of T(2) (*).Conclusion: Data show that T(2) (*) in the lung is very short, and varies considerably with lung volume. Thus, if quantitative assessment of lung density within a breathhold is to be measured accurately, then it is necessary to also determine T(2) (*). [ABSTRACT FROM AUTHOR]- Published
- 2009
- Full Text
- View/download PDF
42. Quantitative MRI measurement of lung density must account for the change in T.
- Author
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Theilmann, Rebecca J., Arai, Tatsuya J., Samiee, Ahsan, Dubowitz, David J., Hopkins, Susan R., Buxton, Richard B., and Prisk, G. Kim
- Abstract
Purpose To evaluate lung water density at three different levels of lung inflation in normal lungs using a fast gradient echo sequence developed for rapid imaging. Materials and Methods Ten healthy volunteers were imaged with a fast gradient echo sequence that collects 12 images alternating between two closely spaced echoes in a single 9-s breathhold. Data were fit to a single exponential to determine lung water density and T [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
43. Diffracted X-ray Tracking Method for Measuring Intramolecular Dynamics of Membrane Proteins.
- Author
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Fujimura, Shoko, Mio, Kazuhiro, Ohkubo, Tatsunari, Arai, Tatsuya, Kuramochi, Masahiro, Sekiguchi, Hiroshi, and Sasaki, Yuji C.
- Subjects
MEMBRANE proteins ,X-rays ,PROTEIN conformation ,PROTEIN structure ,SINGLE molecules - Abstract
Membrane proteins change their conformations in response to chemical and physical stimuli and transmit extracellular signals inside cells. Several approaches have been developed for solving the structures of proteins. However, few techniques can monitor real-time protein dynamics. The diffracted X-ray tracking method (DXT) is an X-ray-based single-molecule technique that monitors the internal motion of biomolecules in an aqueous solution. DXT analyzes trajectories of Laue spots generated from the attached gold nanocrystals with a two-dimensional axis by tilting (θ) and twisting (χ). Furthermore, high-intensity X-rays from synchrotron radiation facilities enable measurements with microsecond-timescale and picometer-spatial-scale intramolecular information. The technique has been applied to various membrane proteins due to its superior spatiotemporal resolution. In this review, we introduce basic principles of DXT, reviewing its recent and extended applications to membrane proteins and living cells, respectively. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
44. Pulmonary perfusion in the prone and supine postures in the normal human lung.
- Author
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Prisk, G. Kim, Yamada, Kei, Henderson, A. Cortney, Arai, Tatsuya J., Levin, David L., Buxton, Richard B., and Hopkins, Susan R.
- Subjects
REGIONAL blood flow ,SUPINE position ,PERFUSION ,ISOLATION perfusion ,MAGNETIC resonance imaging - Abstract
Prone posture increases cardiac output and improves pulmonary gas exchange. We hypothesized that, in the supine posture, greater compression of dependent lung limits regional blood flow. To test this, MRI-based measures of regional lung density, MRI arterial spin labeling quantification of pulmonary perfusion, and density-normalized perfusion were made in six healthy subjects. Measurements were made in both the prone and supine posture at functional residual capacity. Data were acquired in three nonoverlapping 15-mm sagittal slices covering most of the right lung: central, middle, and lateral, which were further divided into vertical zones: anterior, intermediate, and posterior. The density of the entire lung was not different between prone and supine, but the increase in lung density in the anterior lung with prone posture was less than the decrease in the posterior lung (change: +0.07 g/cm
3 anterior, -0.11 posterior; P < 0.0001), indicating greater compression of dependent lung in supine posture, principally in the central lung slice (P < 0.000 1). Overall, density- normalized perfusion was significantly greater in prone posture (7.9 ± 3.6 ml·min-1 ·g-1 prone, 5.1 ± 1.8 supine, a 55% increase; P < 0.05) and showed the largest increase in the posterior lung as it became nondependent (change: +71% posterior, +58% intermediate, +31% anterior; P = 0.08), most marked in the central lung slice (P < 0.05). These data indicate that central posterior portions of the lung are more compressed in the supine posture, likely by the heart and adjacent structures, than are central anterior portions in the prone and that this limits regional perfusion in the supine posture. [ABSTRACT FROM AUTHOR]- Published
- 2007
- Full Text
- View/download PDF
45. Vertical gradients in regional lung density and perfusion in the supine human lung: the Slinky effect.
- Author
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Hopkins, Susan R., Henderson, A. Cortney, Levin, David L., Yamada, Kei, Arai, Tatsuya, Buxton, Richard B., and Prisk, G. Kim
- Subjects
PULMONARY blood vessels ,GRAVITATION ,DENSITY ,MAGNETIC resonance imaging ,SPIN labels - Abstract
In vivo radioactive tracer and microsphere studies have differing conclusions as to the magnitude of the gravitational effect on the distribution of pulmonary blood flow. We hypothesized that some of the apparent vertical perfusion gradient in vivo is due to compression of dependent lung increasing local lung density and therefore perfusion/volume. To test this, six normal subjects underwent functional magnetic resonance imaging with arterial spin labeling during breath holding at functional residual capacity, and perfusion quantified in nonoverlapping 15 mm sagittal slices covering most of the right lung. Lung proton density was measured in the same slices using a short echo 2D-Fast Low-Angle SHot (FLASH) sequence, Mean perfusion was 1.7 ± 0.6 ml·min
-1 · cm-3 and was related to vertical height above the dependent lung (slope = -3%/cm, P < 0.0001). Lung density averaged 0.34 ± 0.08 g/cm³ and was also related to vertical height (slope = -4.9%/cm, P < 0.0001). By contrast, when perfusion was normalized for regional lung density, the slope of the height-perfusion relationship was not significantly different from zero (P = 0.2). This suggests that in vivo variations in regional lung density affect the interpretation of vertical gradients in pulmonary blood flow and is consistent with a simple conceptual model: the lung behaves like a Slinky (Slinky is a registered trademark of Poof-Slinky Incorporated), a deformable spring distorting under its own weight. The greater density of lung tissue in the dependent regions of the lung is analogous to a greater number of coils in the dependent portion of the vertically oriented spring. This implies that measurements of perfusion in vivo will be influenced by density distributions and will differ from excised lungs where density gradients are reduced by processing. [ABSTRACT FROM AUTHOR]- Published
- 2007
- Full Text
- View/download PDF
46. Effects of age on pulmonary perfusion heterogeneity measured by magnetic resonance imaging.
- Author
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Levin, David L., Buxton, Richard B., Spiess, James P., Arai, Tatsuya, Balouch, Jamal, and Hopkins, Susan R.
- Subjects
PULMONARY function tests ,PULMONARY gas exchange ,MAGNETIC resonance imaging ,BLOOD flow ,LUNG diseases - Abstract
Normal aging is associated with a decline in pulmonary function and efficiency of gas exchange, although the effects on the spatial distribution of pulmonary perfusion are poorly understood. We hypothesized that spatial pulmonary perfusion heterogeneity would increase with increasing age. Fifty-six healthy, nonsmoking subjects (ages 21-76 yr) underwent magnetic resonance imaging with arterial spin labeling (ASL) using a Vision 1.5-T whole body scanner (Siemens Medical Systems, Erlangen, Germany). ASL uses a magnetically tagged bolus to generate perfusion maps where signal intensity is proportional to regional pulmonary perfusion. The spatial heterogeneity of pulmonary blood flow was quantified by the relative dispersion (RD = SD/mean, a global index of heterogeneity) of signal intensity for voxels within the right lung and by the fractal dimension (D
s ). There were no significant sex differences for RD (P = 0.81) or Ds (P = 0.43) when age was considered as a covariate. RD increased significantly with increasing age by ~0.1/decade until age 50-59 yr, and there was a significant positive relationship between RD and age (R 0.48, P < 0.0005) and height (R = 0.39, P < 0.01), but not body mass index (R = 0.07, P = 0.67). Age and height combined in a multiple regression were significantly related to RD (R = 0.66, P < 0.0001). There was no significant relationship between RD and spirometry or arterial oxygen saturation. Ds was not related to age, height, spirometry, or arterial oxygen saturation. The lack of relationship between age and Ds argues against an intrinsic alteration in the pulmonary vascular branching with age as being responsible for the observed increase in global spatial perfusion heterogeneity measured by the RD. [ABSTRACT FROM AUTHOR]- Published
- 2007
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- View/download PDF
47. Effect of acetazolamide on pulmonary and muscle gas exchange during normoxic and hypoxic exercise.
- Author
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Jonk, Amy M., van den Berg, Irene P., Olfert, I. Mark, Wray, D. Walter, Arai, Tatsuya, Hopkins, Susan R., and Wagner, Peter D.
- Abstract
Acetazolamide (ACZ) is used to prevent acute mountain sickness at altitude. Because it could affect O
2 transport in several different and potentially conflicting ways, we examined its effects on pulmonary and muscle gas exchange and acid–base status during cycle exercise at ∼30, 50 and 90% in normoxia and acute hypoxia . In a double-blind, order-balanced, crossover design, six healthy, trained men (normoxic = 59 ml kg−1 min−1 ) exercised at both values after ACZ (3 doses of 250 mg, 8 h apart) and placebo. One week later this protocol was repeated using the other drug (placebo or ACZ). We measured cardiac output , leg blood flow (LBF), and muscle and pulmonary gas exchange, the latter using the multiple inert gas elimination technique. ACZ did not significantly affect , , LBF or muscle gas exchange. As expected, ACZ led to lower arterial and venous blood [HCO3 − ], pH and lactate levels ( P < 0.05), and increased ventilation ( P < 0.05). In both normoxia and hypoxia, ACZ resulted in higher arterial PO and saturation and a lower alveolar–arterial P2 O difference (Aa D2 O ) due to both less mismatch and less diffusion limitation ( P < 0.05). In summary, ACZ improved arterial oxygenation during exercise, due to both greater ventilation and more efficient pulmonary gas exchange. However, muscle gas exchange was unaffected. [ABSTRACT FROM AUTHOR]2 - Published
- 2007
- Full Text
- View/download PDF
48. Cervical Spinal Cord Injury in Sumo Wrestling.
- Author
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Nakagawa, Yasuaki, Minami, Kazufumi, Arai, Tatsuya, Okamura, Yoshihisa, and Nakamura, Takashi
- Subjects
SPINAL cord injuries ,WRESTLING ,SUMO ,CASE studies ,CERVICAL vertebrae injuries - Abstract
This article focuses on a study related to cervical spinal cord injury in sumo wrestling. Sumo has long been a traditional sport in Japan. But the first World Sumo Championship was held only as recently as 1992, when the International Sumo Federation was established. Since then, the World Sumo Championships have been held in Japan, Germany, and Brazil. In the present case a 19-year-old collegiate sumo wrestler, 166 cm tall and weighing 78 kg, had been practicing sumo for 10 years. During an intercollegiate sumo championship on October 31, 1999, he competed with an opponent whose weight was 120 kg.
- Published
- 2004
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- View/download PDF
49. Subzero Nonfreezing Hypothermia with Insect Antifreeze Protein Dramatically Improves Survival Rate of Mammalian Cells.
- Author
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Yamauchi, Akari, Miura, Ai, Kondo, Hidemasa, Arai, Tatsuya, Sasaki, Yuji C., and Tsuda, Sakae
- Subjects
SURVIVAL rate ,ANTIFREEZE proteins ,CELLULAR therapy ,CELL preservation ,ICE crystals - Abstract
Cells for therapeutic use are often preserved at +4 °C, and the storage period is generally limited to 2–3 days. Here, we report that the survival rate (%) of mammalian cells is improved to 10–20 days when they are preserved with a subzero supercooled solution containing the antifreeze protein (AFP), for which an ability to stabilize both supercooled water and cell membrane integrity has been postulated. We chose adherent rat insulinoma (RIN-5F) cells as the preservation target, which were immersed into −5 °C-, −2 °C-, or +4 °C-chilled "unfrozen" solution of Euro-Collins or University of Washington (UW) containing the AFP sample obtained from insect or fish. Our results show that the survival rate of the cells preserved with the solution containing insect AFP was always higher than that of the fish AFP solution. A combination of the −5 °C-supercooling and insect AFP gave the best preservation result, namely, UW solution containing insect AFP kept 53% of the cells alive, even after 20 days of preservation at −5 °C. The insect AFP locates highly organized ice-like waters on its molecular surface. Such waters may bind to semiclathrate waters constructing both embryonic ice crystals and a membrane–water interface in the supercooled solution, thereby protecting the cells from damage due to chilling. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
50. Pulse Contour Methods to Estimate Cardiovascular Indices in Micro- And Hypergravity.
- Author
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ARAI, TATSUYA, LIMPER, ULRICH, GAUGER, PETER, and BECK, LUIS
- Subjects
CONTOUR automobile ,CARDIOVASCULAR system ,NONINVASIVE diagnostic tests ,GRAVITATIONAL effects ,COMPARATIVE studies - Abstract
The importance of noninvasive health monitoring in space increased as a result of the long-duration missions on the International Space Station (ISS). In order to monitor changes in cardiovascular indices such as cardiac output (CO) and total peripheral resistance (TPR), many methods have been developed using signal processing and mathematical modeling techniques. However, their performance in various gravitational conditions has not been known. Methods: The present study compared 10 methods to estimate CO and TPR by processing peripheral arterial blood pressure signals recorded from 8 subjects in multiple gravity levels (1 G, 0 G, and 1.8 G) during parabolic flights. For reference data sets, CO and TPR were simultaneously obtained by an inert gas rebreathing technique. Root normalized mean square errors and Bland-Altman plots were used to evaluate the estimation methods. Results: The corrected impedance method achieved the lowest estimation errors (20.0% CO error and 23.5% TPR error) over the three gravity levels. In microgravity, mean arterial pressure was also demonstrated to be an indicator of CO (24.5% error). Discussion: The corrected impedance method achieved low estimation errors for a wide range of the gravity levels. Gravity-dependent performance was observed in the mean arterial pressure method that achieved low errors in the short-term 0 G. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
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