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Background: Arbuscular mycorrhizas (AM) are the most widespread terrestrial symbiosis and are both a key determinant of plant health and a major contributor to ecosystem processes through their role in biogeochemical cycling. Until recently, it was assumed that the fungi which form AM comprise the subphylum Glomeromycotina (G-AMF), and our understanding of the diversity and ecosystem roles of AM is based almost exclusively on this group. However recent evidence shows that fungi which form the distinctive 'fine root endophyte' (FRE) AM morphotype are members of the subphylum Mucoromycotina (M-AMF), so that AM symbioses are actually formed by two distinct groups of fungi. Results: We investigated the influence of nitrogen (N) addition and wheat variety on the assembly of AM communities under field conditions. Visual assessment of roots showed co-occurrence of G-AMF and M-AMF, providing an opportunity to compare the responses of these two groups. Existing 'AM' 18S rRNA primers which co-amplify G-AMF and M-AMF were modified to reduce bias against Mucoromycotina, and compared against a new 'FRE' primer set which selectively amplifies Mucoromycotina. Using the AM-primers, no significant effect of either N-addition or wheat variety on G-AMF or M-AMF diversity or community composition was detected. In contrast, using the FRE-primers, N-addition was shown to reduce M-AMF diversity and altered community composition. The ASV which responded to N-addition were closely related, demonstrating a clear phylogenetic signal which was identified only by the new FRE-primers. The most abundant Mucoromycotina sequences we detected belonged to the same Endogonales clades as dominant sequences associated with FRE morphology in Australia, indicating that closely related M-AMF may be globally distributed. Conclusions: The results demonstrate the need to consider both G-AMF and M-AMF when investigating AM communities, and highlight the importance of primer choice when investigating AMF community dynamics. [ABSTRACT FROM AUTHOR]

Microbial communities have been demonstrated to be essential for healthy and productive soil ecosystems. However, an understanding of the relationship between soil microbial community and soil productivity levels is remarkably limited. In this study, bulk soil (BS), rhizosphere soil (RS), and root (R) samples from the historical high-productive (H) and low-productive (L) soil types of wheat in Hebei province of China were collected and analyzed by high-throughput sequencing. The study highlighted the richness, diversity, and structure of bacterial communities, along with the correlation networks among different bacterial genera. Significant differences in the bacterial community structure between samples of different soil types were observed. Compared with the low-productive soil type, the bacterial communities of samples from the highproductive soil type possessed high species richness, low species diversity, complex and stable networks, and a higher relative abundance of beneficial microbes, such as Pseudoxanthomonas, unclassified Vicinamibacteraceae, Lysobacter, Massilia, Pseudomonas, and Bacillus. Further analysis indicated that the differences were mainly driven by soil organic matter (SOM), available nitrogen (AN), and electrical conductivity (EC). Overall, the soil bacterial community is an important factor affecting soil health and crop production, which provides a theoretical basis for the targeted regulation of microbes in low-productivity soil types. [ABSTRACT FROM AUTHOR]

High-temperature (HT) stress can induce male sterility in wheat; however, the underlying mechanisms remain poorly understood. This study examined proteomic alterations across three developmental stages between normal and HT-induced male-sterile (HT-ms) anthers in wheat. Utilizing tandem mass tagsbased proteomics, we identified 2532 differentially abundant proteins (DAPs): 27 in the tetrad stage, 157 in the binuclear stage, and 2348 in the trinuclear stage. Analyses through Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathways indicated significant enrichment of these DAPs in seven pathways, namely phenylpropanoid biosynthesis, flavonoid biosynthesis, sphingolipid metabolism, MAPK signaling pathway, starch and sucrose metabolism, response to heat, and response to reactive oxygen species (ROS). Our results indicated the downregulation of DAPs associated with phenylpropanoid biosynthesis and starch and sucrose metabolism, which aligns with anther indehiscence and the lack of starch in HT-ms anthers. By contrast, DAPs in the ROS pathway were upregulated, which aligns with excessive ROS accumulation in HT-ms anthers. Additionally, we conducted protein-protein interaction analysis for the DAPs of these pathways, identifying 15 hub DAPs. The abundance of these hub proteins was confirmed through qRTPCR, assessing mRNA expression levels of the corresponding transcripts. Collectively, these results offer insights into the molecular mechanisms underlying HT-induced male sterility in wheat at the proteomic level, providing a valuable resource for further research in plant sexual reproduction. [ABSTRACT FROM AUTHOR]

Introduction: Wheat (Triticum aestivum L.) is among themost important crop worldwide. Given a growing population and changing climate, enhancing wheat yield is of great importance. Yield is closely associated with flower and spike development, and E-class genes play important roles in the flower and kernel development of plants. Currently, the absence of systematic analysis on the E gene family hinders our comprehension of their roles in plant growth and development. Methods: Identify E-class genes based on homologous sequence searches. Analyze the identified E-class genes through a series of gene family analyses. Determine the expression levels of wheat E-class genes by searching public databases. Validate the functions of these genes by transforming them into Arabidopsis. Finally, determine the interactions between the genes through yeast two-hybrid experiments. Results: Fifteen E-class genes (TaEs) were identified in common wheat. Nine Eclass genes were detected in five ancestral/closely related species, including one in Aegilops tauschii (AtE), one in T. Urartu (TuEs), two in T. turgidum (TtEs), two in T. dicoccoides (TdEs), and three in T. spelta (TsEs). The 24 E-class genes were classified into three subgroups using a phylogenetic approach. All genes were highly expressed in spikes, and most were only highly expressed at the floret meristem stage. The effects of TaSEP5-A on flowering and growth cycles were confirmed in homologous mutants and transgenic Arabidopsis thaliana. The Eclass genes were able to regulate the growth cycle of Arabidopsis. Finally, we confirmed the interactions between TaSEP5-A and other wheat E-class genes based on yeast two-hybrid assays. Discussion: Our findings provide information regarding the E-class genes in wheat and will potentially promote the application of these genes in wheat improvement. [ABSTRACT FROM AUTHOR]

Selenium (Se) is a micronutrient that has multiple biochemical effects ranging from a nutritional deficiency at low levels to toxicity at high levels. Its quantification in environmental systems is vital to protect the health of people and animals. This study developed and validated methods to determine the total selenium (Se) concentration in soil, maize plants, and maize flour. The performance of the methods was ascertained using matrix certified reference materials (CRMs), namely NMIJ CRM 7303-a (trace elements in lake sediments), NIST SRM 1646-a (estuarine sediments), NIST SRM 1570-a (spinach leaves), NIST SRM 1571 (orchard leaves), NCS ZC 73010 (maize flour) and NIST RM 8437 (hard red spring wheat flour). All methods fulfilled the performance requirements of the AOAC International. An acceptable accuracy was achieved with percentage recoveries between 57 and 102% and E n ‐ scores within ±1 limits. Repeatability ( RSD r , %) and intermediate precision (RSD R , %) ranged from 4 to 12%, and 9 to 15%, respectively. The limit of detection (LOD) and limit of quantification (LOQ) for soil were 0.024 ng. g−1 and 0.082 ng. g−1, respectively. The LODs and LOQs for maize plants and flour were 0.0036 and 0.0179 ng. g−1, respectively. The performance characteristics of the methods were comparable with previously reported methods, confirming reliability. The measurement uncertainty was evaluated following the guide to the expression of uncertainty in measurement (GUM). Relative expanded uncertainty at a 95% level of confidence (k = 2) was less than 24% for the final measurement results for all the different matrices. [ABSTRACT FROM AUTHOR]

Zinc (Zn) deficiency and salt stress are well-known soil problems and often happen parallelly in cultivated soils. In this study, Zn-amino acid complexes (Zn-AAc) were used as a source of Zn to determine their effects on salt-induced damage in wheat plants. The bread wheat (Triticum aestivum L. cvs. Kavir) was supplied with Zn-glycine (Zn-Gly), Zn-alanine (Zn-Ala), and ZnSO4 as Zn sources at three salinity levels (EC 2, 4 and 6 dS m-). Salinity caused a significant decrease in shoot dry matter and grain yield of wheat, but this negative effect was significantly improved by the application of Zn-AAc. Salt stress decreased shoot and grain Zn concentration, but this reduction was lower in plants supplied by Zn-AAc. Calcium (Ca) and potassium (K) concentrations were increased in a shoot by salinity stress while decreased in grain. Sodium (Na) concentration decreased in shoot and grain by using Zn-AAc. At all of the salinity levels, wheat supplied with Zn-AAc had lower lipid peroxidation compared to those grown under the ZnSO4 source. Application of Zn-AAc increased the activities of catalase (CAT) and superoxide dismutase (SOD) in the roots of wheat plants in saline conditions. Based on the results, the adverse effects of salinity stress on wheat plants can moderately improve with Zn-AAc application. [ABSTRACT FROM AUTHOR]

Agronomy biofortification is an important crop management strategy to enhance concentrations of micronutrients in edible portions. The availability of micronutrients for plant uptake is reduced by the high salinity, pH, and lime of soils. Hence, this study aimed to determine the most appropriate time and the best ratio of zinc (Zn) and iron (Fe) consumption during the wheat growth stages in a saline and calcareous soil. The experiment consisted of two factors with four levels; 0, 30, 60, and 120 kg Zn ha−1 as Zn0, Zn1, Zn2, and Zn3 respectively, and 0, 2.5, 5, and 7.5 kg Fe ha−1 as Fe0, Fe1, Fe2, and Fe3 respectively, in a randomized complete block design with four replications. The results showed that the interaction effects of Fe and Zn fertilizers application were significant on the wheat yield indices and concentration of Fe and Zn in wheat shoots and grain. The simultaneous application of 120 kg Zn ha−1 and 5 kg Fe ha−1 caused significant improvement (p < 0.05) in thousand kernel weight (9.1%) and subsequently grain yield (23.4%) compared to the control treatment. The Zn concentration in the wheat shoot during tillering (37.0–58.2 mg Zn kg−1) was higher than the other two growth stages (elongation (29.2–40.8 mg Zn kg−1) and booting (20.0–31.0 mg Zn kg−1)). While the highest Fe concentration in wheat shoots was observed at the stem elongation stage (98.5–268.8 mg Fe kg−1), then the booting stage (91.0–150.8 mg Fe kg−1) and finally the least absorption was at the tillering (80.0–120.0 mg Fe kg−1). Because of the high calcium carbonate, salinity and Zn- deficient soil of the experimental site, the Zn concentration in wheat grain was obtained in a range of 3 to 19 mg kg−1. The results clarified that the fertilizer application of 30 kg Zn ha−1 and 2.5 kg Fe ha−1 can be proportionally and simultaneously increased the concentration of Fe and Zn in wheat grain by 100%. Therefore, the soil application of 30 kg Zn and 2.5 kg Fe per hectare proposed for improvement in quantitative (619 kg ha−1 increase in wheat grain yield) and qualities (100% increase in grain Zn and Fe concentration and 8% increase in thousand kernel weight) indices of wheat yield in calcareous and saline soils. [ABSTRACT FROM AUTHOR]

Heavy metal stress poses a significant threat to the productivity of agricultural systems and human health. Silicon (Si) is widely reported to be very effective against the different heavy metal stresses in crops. According to reports, it can help plants that are under cadmium (Cd) and nickel (Ni) stress. The presented work investigated how silicon interacted in Cd- and Ni-stressed wheat and mitigated metal toxicity. A pot experiment was carried out in which wheat crop was irrigated with Cd- and Ni-contaminated water. Application of Cd and Ni-contaminated water to wheat significantly reduced the root and shoot growth parameters and physiological and biochemical factors while increasing the antioxidant enzymatic activity and bioaccumulation of Cd and Ni metal in shoot and root as compared to the control. Application of Si led to an improvement in physiological parameters, i.e., greenness of leaves, i.e., SPAD values (17% and 26%), membrane stability (26% and 25%), and growth parameters i.e., root surface area (42% and 23%), root length (81% and 79%), root dry weight (456% and 190%), root volume (64% and 32%), shoot length (41% and 35%), shoot dry weight of shoot (111% and 117%), and overall grain weight (62% and 72%) under Cd and Ni stress, respectively. It increased the activity of antioxidant activity (max. up to 20%) whereas decreased the metal bioaccumulation of Cd and Ni in the roots and shoot (max. up to 62%) of wheat. It was concluded that the application of Si potentially increases antioxidant activity and metal chelation resulting in decreased oxidative damage and reducing the effect of Cd and Ni stress on wheat which improves growth and physiological parameters as well as inhibits Cd and Ni inclusion in food chain under Cd and Ni toxicity reducing health risks associated with these metals. [ABSTRACT FROM AUTHOR]

This study reports the earliest directly dated occurrence of archaeological wheat and cotton in the humid forests of West Africa. These are the first archaeobotanical results from the medieval urban center of Ile-Ife, southwestern Nigeria, best known for its famous artworks. Both wheat and cotton likely spread through trans-Saharan trade networks that laid the foundation for later European trade systems. Forty-eight (48) grains of free-threshing wheat (Triticum aestivum/durum) represent the largest assemblage of wheat recovered in sub-Saharan West Africa, which is surprising given that wheat cannot be cultivated locally. Larger quantities of cotton (Gossypium sp.) recovered from late 12th- to early 13th-century CE contexts suggest earlier and more widespread use than wheat. Cotton may have been cultivated and manufactured into cloth locally. The quick adoption of these exotic crops illustrates the active negotiation of prestige through culinary and adornment practices, as well as a high degree of agricultural experimentation. [ABSTRACT FROM AUTHOR]

Crop statistics are crucial for developing a demand-based export and import strategy to ensure a country's sustainable food security. Remote sensing efficiently generates essential crop statistics, while ground-based supplementary sensor data offers sufficient information for crop delineation. This study explored the multispectral satellite imagery using in-situ ground-based hyperspectral reflectance phenology information as training data to delineate wheat from other competitive winter crops in Northwestern Bangladesh as a case study. Wheat spectral signatures were primarily obtained through a hand-held Spectroradiometer at various phenological stages, aligned with Sentinel-2 data availability. Five vegetation indices (VIs), namely Normalized Difference Vegetation Index (NDVI), Red-edge NDVI (RENDVI), Enhanced Vegetation Index (EVI), Greenness Chromatic Coordinate (GCC) and Soil-Adjusted Vegetation Index (SAVI), were derived from Spectroradiometer-data across six wheat growth stages: seedling, tillering, booting, flowering, grain development, and maturity. Maximum and minimum threshold values for the VIs at those six growth stages were determined from regression analysis of the values collected from Spectroradiometer and Sentinel-2. A rule-based classification technique was then used to categorize Sentinel-2 for wheat crop delineation based on those threshold values. The results revealed that maps based on NDVI, EVI, and SAVI showed overall accuracies of 83.33%, 85.18%, and 81.48%, respectively. These accuracies were found to be statistically acceptable (p < 0.05) outcomes. A positive agreement was observed when comparing the remotely sensed area at the union (4th tier administrative level) with the officially reported data of Bangladesh. This innovative method has the potential to be extended for developing phenology and area delineation for other major crops locally and globally. Highlights: A phenology-based algorithm was applied for delineating winter wheat. The algorithm is developed by combining Sentinel-2 images and Spectroradiometer data. Vegetative indices of wheat exhibited a strong relationship between two sensors' data. Accuracy assessment and validation of the produced maps demonstrated significant results. The method has the potential to be extended to area mapping for other crops locally and globally. [ABSTRACT FROM AUTHOR]

Background: Fusarium head blight (FHB), caused by Fusarium graminearum, is a major disease of wheat in North America. FHB infection causes fusarium damaged kernels (FDKs), accumulation of deoxynivalenol (DON) in the grain, and a reduction in quality and grain yield. Inheritance of FHB resistance is complex and involves multiple genes. The objective of this research was to identify QTL associated with native FHB and DON resistance in a 'D8006W'/'Superior', soft white winter wheat population. Results: Phenotyping was conducted in replicated FHB field disease nurseries across multiple environments and included assessments of morphological and FHB related traits. Parental lines had moderate FHB resistance, however, the population showed transgressive segregation. A 1913.2 cM linkage map for the population was developed with SNP markers from the wheat 90 K Infinium iSelect SNP array. QTL analysis detected major FHB resistance QTL on chromosomes 2D, 4B, 5A, and 7A across multiple environments, with resistance from both parents. Trait specific unique QTL were detected on chromosomes 1A (visual traits), 5D (FDK), 6B (FDK and DON), and 7D (DON). The plant height and days to anthesis QTL on chromosome 2D coincided with Ppd-D1 and were linked with FHB traits. The plant height QTL on chromosome 4B was also linked with FHB traits; however, the Rht-B1 locus did not segregate in the population. Conclusions: This study identified several QTL, including on chromosome 2D linked with Ppd-D1, for FHB resistance in a native winter wheat germplasm. [ABSTRACT FROM AUTHOR]

Background: Fusarium head blight (FHB) significantly impacts wheat yield and quality. Understanding the intricate interaction mechanisms between Fusarium graminearum (the main pathogen of FHB) and wheat is crucial for developing effective strategies to manage and this disease. Our previous studies had shown that the absence of the cell wall mannoprotein FgCWM1, located at the outermost layer of the cell wall, led to a decrease in the pathogenicity of F. graminearum and induced the accumulation of salicylic acid (SA) in wheat. Hence, we propose that FgCWM1 may play a role in interacting between F. graminearum and wheat, as its physical location facilitates interaction effects. Results: In this study, we have identified that the C-terminal region of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9 (NDUFA9) could interact with FgCWM1 through the yeast two-hybrid assay. The interaction was further confirmed through the combination of Co-IP and BiFC analyses. Consistently, the results of subcellular localization indicated that TaNDUFA9 was localized in the cytoplasm adjacent to the cell membrane and chloroplasts. The protein was also detected to be associated with mitochondria and positively regulated complex I activity. The loss-of-function mutant of TaNDUFA9 exhibited a delay in flowering, decreased seed setting rate, and reduced pollen fertility. However, it exhibited elevated levels of SA and increased resistance to FHB caused by F. graminearum infection. Meanwhile, inoculation with the FgCWM1 deletion mutant strain led to increased synthesis of SA in wheat. Conclusions: These findings suggest that TaNDUFA9 inhibits SA synthesis and FHB resistance in wheat. FgCWM1 enhances this inhibition by interacting with the C-terminal region of TaNDUFA9, ultimately facilitating F. graminearum infection in wheat. This study provides new insights into the interaction mechanism between F. graminearum and wheat. TaNDUFA9 could serve as a target gene for enhancing wheat resistance to FHB. [ABSTRACT FROM AUTHOR]

Anthocyanins are plant secondary metabolites belonging to the polyphenol class of natural water-soluble phytopigments. The accumulation of anthocyanins in different plant tissues can improve plant survival under adverse conditions. In addition, plants with the resulting colorful morphology can be utilized as landscape plants. Triticum boeoticum (syn. Triticum monococcum ssp. aegilopoides, 2n=2x=14, AbAb) serves as a valuable genetic resource for the improvement of its close relative common wheat in terms of enhancing resilience to various biotic and abiotic stresses. In our previous study, the EMSmutagenized mutant Z2921 with a red glume, stem, and rachis was generated from T. boeoticum G52, which has a green glume, stem, and rachis. In this study, the F1, F2, and F2:3 generations of a cross between mutant-type Z2921 and wildtype G52 were developed. A single recessive gene, tentatively designated RgM4G52, was identified in Z2921 via genetic analysis. Using bulked segregant exome capture sequencing (BSE-Seq) analysis, RgM4G52 was mapped to chromosome 6AL and was flanked by the markers KASP-58 and KASP-26 within a 3.40-cM genetic interval corresponding to 1.71-Mb and 1.61-Mb physical regions in the Chinese Spring (IWGSC RefSeq v1.1) and Triticum boeoticum (TA299) reference genomes, respectively, in which seven and four genes related to anthocyanin synthesis development were annotated. Unlike previously reported color morphology-related genes, RgM4G52 is a recessive gene that can simultaneously control the color of glumes, stems, and rachis in wild einkorn. In addition, a synthetic Triticum dicoccum-T. boeoticum amphiploid Syn-ABAb-34, derived from the colchicine treatment of F1 hybrids between tetraploid wheat PI 352367 (T. dicoccum, AABB) and Z2921, expressed the red stems of Z2921. The flanking markers of RgM4G52 developed in this study could be useful for developing additional common wheat lines with red stems, laying the foundation for marker-assisted breeding and the fine mapping of RgM4G52. [ABSTRACT FROM AUTHOR]

Wheat (Triticum aestivum L.) is a staple food crop that plays a crucial role in global food security. A suitable planting pattern and optimum nitrogen (N) split management are efficient practices for improving wheat production. Therefore, an experiment was performed to explore the effect of N split management and sowing patterns on wheat at the Agronomy Research Farm, The University of Agriculture Peshawar, during rabi season 2020-21 and 2021-22. The treatments consisted of different nitrogen rates of 0, 80, 120, and 160 kg ha− 1 and planting patterns of W, M, broadcast and line sowing. The pooled analysis of both cropping seasons showed that application of 120 kg N ha− 1 increased spikelets spike− 1, grains spike− 1, 1000 grains weight, grain yield, grain N content, evapotranspiration and water use efficiency by 21.9, 16.7, 21.8, 70, 13, 19.9 and 40% as compared to control, respectively. In addition, W and M were observed the best management practices among all planting patterns. The M planting pattern enhanced chlorophyll a, b, carotenoids and evapotranspiration while W plating pattern improved yield components and yield of wheat as compared to broadcast planting patterns. The principal component analysis biplot showed a close association of M and W planting patterns with 120 kg N ha− 1 in most of the studied traits. Hence, it is concluded that split application of 120 kg N ha− 1 in W and M sowing patterns enhanced growth, biochemical traits and water use efficiency, reducing N fertilization from 160 to 120 kg ha− 1 while increasing grain yield of wheat. Hence, it is recommended that application of 120 kg N ha⁻¹ in combination with W and M planting patterns offer a sustainable approach to enhancing wheat production in the alkaline soil conditions of the Peshawar valley. [ABSTRACT FROM AUTHOR]

Background: Septoria tritici blotch (STB) disease causes yield losses of up to 50 per cent in susceptible wheat cultivars and can reduce wheat production. In this study, genomic architecture for adult-plant STB resistance in a Septoria Association Mapping Panel (SAMP) having 181 accessions and genomic regions governing STB resistance in a South Asian wheat panel were looked for. Results: Field experiments during the period from 2019 to 2021 revealed those certain accessions, namely BGD52 (CHIR7/ANB//CHIR1), BGD54 (CHIR7/ANB//CHIR1), IND92 (WH 1218), IND8 (DBW 168), and IND75 (PBW 800), exhibited a high level of resistance. Genetic analysis revealed the presence of 21 stable quantitative trait nucleotides (QTNs) associated with resistance to STB (Septoria tritici blotch) on all wheat chromosomes, except for 2D, 3A, 3D, 4A, 4D, 5D, 6B, 6D, and 7A. These QTNs were predominantly located in chromosome regions previously identified as associated with STB resistance. Three Quantitative Trait Loci (QTNs) were found to have significant phenotypic effects in field evaluations. These QTNs are Q.STB.5A.1, Q.STB.5B.1, and Q.STB.5B.3. Furthermore, it is possible that the QTNs located on chromosomes 1A (Q.STB.1A.1), 2A (Q.STB_DH.2A.1, Q.STB.2A.3), 2B (Q.STB.2B.4), 5A (Q.STB.5A.1, Q.STB.5A.2), and 7B (Q.STB.7B.2) could potentially be new genetic regions associated with resistance. Conclusion: Our findings demonstrate the importance of Asian bread wheat as a source of STB resistance alleles and novel stable QTNs for wheat breeding programs aiming to develop long-lasting and wide-ranging resistance to Zymoseptoria tritici in wheat cultivars. [ABSTRACT FROM AUTHOR]

Background: Heat stress is one of the abiotic stresses that make wheat crops vulnerable, which significantly impacts crop production around the world. An increase in temperature during the reproductive phase (anthesis) beyond the optimal range of 15–20 °C leads to decreased crop production, poor quality of the grain, and altered physiological and biochemical processes. To study the association between high temperature and physio-biochemical traits under normal and late sown, a set of fifteen genotypes was utilized. Results: Relative water content under high temperatures had an overall decrease of 8.7%. However, grain protein and malondialdehyde content were higher in the stressed conditions than in the control, with increases of 20.2% and 38.9%, respectively. Marker Xgwm67, located on chromosome 5B, was found to be significantly associated with malondialdehyde content (R2 = 21%) and Xgwm570, located on 6A, was closely linked to relative water content as well as grain protein content (R2 = 16%) revealed by regression analysis. The correlation matrix displays a positive association between the control and stressed condition by R2 = 0.92, 0.82, and 0.53 in malondialdehyde, relative water content, and grain protein, respectively. However, there was a negative correlation between water content–malondialdehyde and malondialdehyde–grain protein, though there was only a 4% correlation between grain protein content (control) and relative water content (stressed). Based on the tolerance matrix, WH730 and RAJ4079 were heat tolerant, and DBW173 and HD3086 were sensitive. Conclusions: These findings indicate that to identify tolerant genotypes, physiological and biochemical traits can be utilized as an alternate criterion, and these closely associated markers can be applied for improved late-planted wheat production through MAS. The breeding scheme and genome editing by recognizing novel genes through physio-biochemical parameters, marker-assisted selection, and prospective screening of tolerant genotypes are proclaimed by the study. [ABSTRACT FROM AUTHOR]

Background: Inulin and inulin-derived fructooligosaccharides (FOS) are well-known prebiotics for use in companion animals and livestock. The mechanisms by which FOS contribute to health has not been fully established. Further, the fine chemistry of fructan structures from diverse sources, such as graminan-type fructans found in cereal crops, has not been fully elucidated. New methods to study fructan structure and microbial responses to these complex carbohydrates will be key for evaluating the prebiotic potency of cereal fructans found in cattle feeds. As the rumen microbiome composition is closely associated with their metabolic traits, such as feed utilization and waste production, prebiotics and probiotics represent promising additives to shift the microbial community toward a more productive state. Results: Within this study, inulin, levan, and graminan-type fructans from winter wheat, spring wheat, and barley were used to assess the capacity of rumen-derived Bifidobacterium boum, Bifidobacterium merycicum, and Lactobacillus vitulinus to metabolize diverse fructans. Graminan-type fructans were purified and structurally characterized from the stems and kernels of each plant. All three bacterial species grew on FOS, inulin, and cereal crop fructans in pure cultures. L. vitulinus was the only species that could metabolize levan, albeit its growth was delayed. Fluorescently labelled polysaccharides (FLAPS) were used to demonstrate interactions with Gram-positive bacteria and confirm fructan metabolism at the single-cell level; these results were in agreement with the individual growth profiles of each species. The prebiotic potential of inulin was further investigated within naïve rumen microbial communities, where increased relative abundance of Bifidobacterium and Lactobacillus species occurred in a dose-dependent and temporal-related manner. This was supported by in situ analysis of rumen microbiota from cattle fed inulin. FLAPS probe derived from inulin and fluorescent in situ hybridization using taxon-specific probes confirmed that inulin interacts with Bifidobacteria and Lactobacilli at the single-cell level. Conclusion: This research revealed that rumen-derived Bifidobacteria and Lactobacilli vary in their metabolism of structurally diverse fructans, and that inulin has limited prebiotic potential in the rumen. This knowledge establishes new methods for evaluating the prebiotic potential of fructans from diverse plant sources as prebiotic candidates for use in ruminants and other animals. [ABSTRACT FROM AUTHOR]

Leaf rust caused by Puccinia triticina (Pt) is one of the most impactful diseases causing substantial losses in common wheat (Triticum aestivum L.) crops. In adult plants resistant to Pt, a horizontal adult plant resistance (APR) is observed: APR protects the plant against multiple pathogen races and is distinguished by durable persistence under production conditions. The Lr46/Yr29 locus was mapped to chromosome 1B of common wheat genome, but the identity of the underlying gene has not been demonstrated although several candidate genes have been proposed. This study aimed to analyze the expression of nine candidate genes located at the Lr46/Yr29 locus and their four complementary miRNAs (tae-miR5384-3p, tae-miR9780, tae-miR9775, and tae-miR164), in response to Pt infection. The plant materials tested included five reference cultivars in which the molecular marker csLV46G22 associated with the Lr46/Yr29-based Pt resistance was identified, as well as one susceptible control cultivar. Biotic stress was induced in adult plants by inoculation with fungal spores under controlled conditions. Plant material was sampled before and at 6, 12, 24, 48 hours post inoculation (hpi). Differences in expression of candidate genes at the Lr46/Yr29 locus were analyzed by qRT-PCR and showed that the expression of the genes varied at the analyzed time points. The highest expression of Lr46/Yr29 candidate genes (Lr46-Glu1, Lr46-Glu2, Lr46-Glu3, Lr46-RLK1, Lr46-RLK2, Lr46-RLK3, Lr46-RLK4, Lr46-Snex, and Lr46-WRKY) occurred at 12 and 24 hpi and such expression profiles were obtained only for one candidate gene among the nine genes analyzed (Lr46-Glu2), indicating that it may be a contributing factor in the resistance response to Pt infection. [ABSTRACT FROM AUTHOR]

Background: Sulphotransferase (SOT) enzyme (encoded by a conserved family of SOT genes) is involved in sulphonation of a variety of compounds, through transfer of a sulphuryl moiety from 3'phosphoadenosine- 5'phosphosulphate (PAPS) to a variety of secondary metabolites. The PAPS itself is derived from 3'adenosine-5'phosphosulphate (APS) that is formed after uptake of sulphate ions from the soil. The process provides tolerance against abiotic stresses like drought and heat in plants. Therefore, a knowledge of SOT genes in any crop may help in designing molecular breeding methods for improvement of tolerance for drought and heat. Methods: Sequences of rice SOT genes and SOT domain (PF00685) of corresponding proteins were both used for identification of SOT genes in wheat and six related species (T. urartu, Ae. tauschii, T. turgidum, Z. mays, B. distachyon and Hordeum vulgare), although detailed analysis was conducted only in wheat. The wheat genes were mapped on individual chromosomes and also subjected to synteny and collinearity analysis. The proteins encoded by these genes were examined for the presence of a complete SOT domain using 'Conserved Domain Database' (CDD) search tool at NCBI. Results: In wheat, 107 TaSOT genes, ranging in length from 969 bp to 7636 bp, were identified and mapped onto individual chromosomes. SSRs (simple sequence repeats), microRNAs, long non-coding RNAs (lncRNAs) and their target sites were also identified in wheat SOT genes. SOT proteins were also studied in detail. An expression assay of TaSOT genes via wheat RNA-seq data suggested engagement of these genes in growth, development and responses to various hormones and biotic/abiotic stresses. Conclusions: The results of the present study should help in further functional characterization of SOT genes in wheat and other related crops. [ABSTRACT FROM AUTHOR]

Introduction: Wheat awns are crucial determinants of wheat yield due to their capacity to photosynthesize and exchange gas. Understanding the genetic basis of awn length (AL) is essential for improving wheat yield in molecular breeding programs. Methods: In this study, quantitative trait loci (QTLs) of AL were analyzed using recombinant inbred line (RIL) mapping population referred to as YY-RILs, which was derived from a cross between Yannong 15 (YN15) and Yannong 1212 (YN1212). Results and discussion: Seven putative additive QTLs and 30 pairwise epistatic QTLs for AL were identified. Among them, five novel additive QTLs (except qAl- 2A and qAl-5A.2) and 30 novel pairwise epistatic QTLs were identified. qAl-5A.1 was repeatedly identified in all five environment datasets, which was considered to be one novel stable QTL for AL with minor additive effects. eqAl-2B.2-2 significantly interacted with eight loci and could be of great importance in regulating awn development. The genes associated with the major stable QTL of qAl-5A.2 and the minor stable QTL of qAl-2A were B1 and WFZP-A, respectively. Awn lengths exhibited significant genetic correlations with kernel weight and kernels per spike, which could affect grain protein content to a lesser extent. This study enhances our understanding of the genetic basis of awn development and identifies novel genes as well as markers for future genetic improvement of wheat yield. [ABSTRACT FROM AUTHOR]

Bread wheat (T. aestivum) is one of the world's most widely consumed cereals. Since micronutrient deficiencies are becoming more common among people who primarily depend upon cereal-based diets, a need for better-quality wheat varieties has been felt. An association panel of 154 T. aestivum lines was evaluated for the following quality traits: grain appearance (GA) score, grain hardness (GH), phenol reaction (PR) score, protein percent, sodium dodecyl sulfate (SDS) sedimentation value, and test weight (TWt). In addition, the panel was also phenotyped for grain yield and related traits such as days to heading, days to maturity, plant height, and thousand kernel weight for the year 2017-18 at the Borlaug Institute for South Asia (BISA) Ludhiana and Jabalpur sites. We performed a genome-wide association analysis on this panel using 18,351 genotyping-bysequencing (GBS) markers to find marker-trait associations for quality and grain yield-related traits. We detected 55 single nucleotide polymorphism (SNP) marker trait associations (MTAs) for quality-related traits on chromosomes 7B (10), 1A (9), 2A (8), 3B (6), 2B (5), 7A (4), and 1B (3), with 3A, 4A, and 6D, having two and the rest, 4B, 5A, 5B, and 1D, having one each. Additionally, 20 SNP MTAs were detected for yield-related traits based on a field experiment conducted in Ludhiana on 7D (4) and 4D (3) chromosomes, while 44 SNP MTAs were reported for Jabalpur on chromosomes 2D (6), 7A (5), 2A (4), and 4A (4). Utilizing these loci in marker-assisted selection will benefit from further validation studies for these loci to improve hexaploid wheat for better yield and grain quality [ABSTRACT FROM AUTHOR]

Introduction: Gluten quality is one of the most important traits of the common wheat (Triticum aestivum L.). In Chinese wheat production, Yannong series cultivars/derivative lines possess unique characteristics and play an important role in both yield and quality contribution. Methods: To dissect their genetic basis of the gluten quality, in this study, allelic variations of high-molecular-weight glutenin subunit (HMW-GS) and lowmolecular- weight glutenin subunit (LMW-GS) in 30 Yannong series wheat cultivars/derivative lines and three check cultivars were evaluated using the allele-specific molecular markers, and six crucial quality indexes were also further measured and analyzed. Results: The results demonstrated that the frequencies of HMW-GSs By8, Dx5 + Dy10 and Dx5 + Dy10 + Dy12 in these 30 genotypes and three check cultivars accounted for 87.9%, 24.2% and 9.1%, respectively. For the allelic variations of LMW-GSs, Glu-A3a, Glu-A3b, Glu-A3c, Glu-A3f, and Glu-A3g were identified in 18, 9, 13, 11, and 2 genotypes, respectively; Glu-B3d, Glu-B3g and Glu-B3f were identified in 13, 23 and 4 genotypes, respectively. Notably, Yannong 999, containing By8 + Dx5 + Dy10, and Jinan 17 containing By8 + Dy12 both meet the national standard for high-quality wheat and belong to the category of first-class high-quality strong gluten wheat. Discussion: These findings can provide reference for wheat quality improvement and popularization in the production. [ABSTRACT FROM AUTHOR]

Motivation Despite the widespread occurrence of polyploids across the Tree of Life, especially in the plant kingdom, very few computational methods have been developed to handle the specific complexities introduced by polyploids in phylogeny estimation. Furthermore, methods that are designed to account for polyploidy often disregard incomplete lineage sorting (ILS), a major source of heterogeneous gene histories, or are computationally very demanding. Therefore, there is a great need for efficient and robust methods to accurately reconstruct polyploid phylogenies. Results We introduce Polyphest (POLYploid PHylogeny ESTimation), a new method for efficiently and accurately inferring species phylogenies in the presence of both polyploidy and ILS. Polyphest bypasses the need for extensive network space searches by first generating a multilabeled tree based on gene trees, which is then converted into a (uniquely labeled) species phylogeny. We compare the performance of Polyphest to that of two polyploid phylogeny estimation methods, one of which does not account for ILS, namely PADRE, and another that accounts for ILS, namely MPAllopp. Polyphest is more accurate than PADRE and achieves comparable accuracy to MPAllopp, while being significantly faster. We also demonstrate the application of Polyphest to empirical data from the hexaploid bread wheat and confirm the allopolyploid origin of bread wheat along with the closest relatives for each of its subgenomes. Availability and implementation Polyphest is available at https://github.com/NakhlehLab/Polyphest. [ABSTRACT FROM AUTHOR]

Background: Beneficial effects from practising a Paleolithic diet as compared to a diabetes diet on weight, waist circumference, satiety, leptin, HbA1c and glucose control in randomised controlled trial participants with type 2 diabetes could be due to lower leptin resistance. Support for this hypothesis comes from an in vitro experiment that showed that digested wheat gluten, which is excluded from a Paleolithic diet, inhibits leptin from binding to its receptor, thus indicating a possible dietary cause of leptin resistance. However, the clinical relevance of the latter finding is unclear since removal of enzyme activity from the gluten digest by heat treatment also abolished leptin binding inhibition. Assessment of leptin binding inhibition in vivo is possible by comparison of total leptin levels with those of 'biologically active' leptin bound to its receptor (bioLep). Objectives: To assess the effects of a Paleolithic diet compared to a diabetes diet on leptin binding inhibition and to replicate our in vitro study. Methods: BioLep and total leptin levels were measured in secondary analysis of fasting plasma samples from our open label random order three plus three-month long cross-over trial performed in 2005–2007, that compared a Paleolithic diet with a diabetes diet in participants with type 2 diabetes without insulin treatment (per protocol). BioLep was also measured in vitro for known recombinant leptin concentrations incubated with a series of concentrations of 10 kDa spin-filtered digested wheat gluten, with or without prior heat treatment, at 100ºC for 30 min and centrifugation. Results: There was no difference between diets when comparing differences between bioLep and total leptin levels and their ratio in the 13 participants, three women and 10 men, aged 52–74 years with a mean BMI of 30 kg/m2 and a mean diabetes duration of eight years. We found no carry-over or period effect for bioLep and total leptin. In vitro, wheat gluten digest inhibited leptin binding in a dose-dependent manner but not after heat treatment. Conclusions: We found no leptin binding inhibition after the Paleolithic or diabetes diet, possibly due to its abolishment from cooking-related heat treatment of wheat gluten. Trial registration: Registered on 14/02/2007 at ClinicalTrials.gov Identifier: NCT00435240. [ABSTRACT FROM AUTHOR]

Wheat is an important staple crop not only in Pakistan but all over the globe. Although the area dedicated to wheat cultivation expands annually, the quantity of wheat harvested is declining due to various biotic and abiotic factors. Global wheat production and output have suffered as a result of the drought, which is largely driven by a lack of water and environmental factors. Organic fertilizers have been shown to reduce the severity of drought. The current research was conducted in semi-arid climates to mitigate the negative effects of drought on wheat during its critical tillering (DTS), flowering (DFS), and grain filling (DGFS) stages through the application of three different abscisic acid treatments: ABA0 (0 mgL−1) control, ABA1 (100 mgL−1) and ABA2 (200 mgL−1). Wheat growth and yield characteristics were severely harmed by drought stress across all critical development stages, with the DGFS stage being particularly vulnerable and leading to a considerable loss in yield. Plant height was increased by 24.25%, the number of fertile tillers by 25.66%, spike length by 17.24%, the number of spikelets per spike by 16.68%, grain count per spike by 11.98%, thousand-grain weight by 14.34%, grain yield by 26.93% and biological yield by 14.55% when abscisic acid (ABA) was applied instead of the control treatment. Moreover, ABA2 increased the more physiological indices (water use efficiency (36.12%), stomatal conductance (44.23%), chlorophyll a (24.5%), chlorophyll b (29.8%), transpiration rate (23.03%), photosynthetic rate (24.84%), electrolyte leakage (− 38.76%) hydrogen peroxide (− 18.09%) superoxide dismutase (15.3%), catalase (20.8%), peroxidase (− 18.09%), and malondialdehyde (− 13.7%)) of drought-stressed wheat as compared to other treatments. In the case of N, P, and K contents in grain were maximally improved with the application of ABA2. Through the use of principal component analysis, we were able to correlate our results across scales and provide an explanation for the observed effects of ABA on wheat growth and production under arid conditions. Overall, ABA application at a rate of 200 mgL−1 is an effective technique to boost wheat grain output by mitigating the negative effects of drought stress. [ABSTRACT FROM AUTHOR]

In wheat (Triticum aestivum), canopy architecture, culm diameter and stem strength are the key providers of lodging tolerance. To better understand the lodging phenomenon and determine the best linked trait to lodging, a study of lodging resistance was conducted in both artificially-induced and natural lodging conditions. Various morphological, phenological and biochemical traits, such as acid detergent fibre, acid detergent lignin, cellulose and activity of lignin-synthesising enzymes (phenylalanine ammonia lyase and tyrosine ammonia lyase) were recorded. Anatomical features were also examined by light microscopy, using the Wiesner reaction. Genotype C306 demonstrated the highest susceptibility to lodging compared to other varieties due to its limited production of lignin-synthesising enzymes, as well as its taller plant height and narrower culms. The dwarf mutants (DM6 and DM7) have a stronger resistance against lodging because they have thick stems and a short plant canopy structure. The most suitable donors for lodging are semidwarf varieties (HD2967, DPW621-50, DBW88) because they have higher production of lignin and lignin-synthesising enzymes. Grey correlation analysis also confirmed the ability of these three genotypes to tolerate lodging. The genotypes studied were comprehensively ranked. The study also includes an effort towards the standardisation of lodging methodology under artificial conditions. Lodging occurs when crop stems bend permanently from their usual upright position, reducing yield. Lodging has been witnessed in various places worldwide, and its unpredictable nature makes it a substantial constraint for yield improvement.To better understand this process and determine the trait best correlated with lodging in wheat (Triticum aestivum), a study was conducted under both artificially-induced and natural lodging conditions. Genotypes were ranked, and we tried to standardise methodology for measuring lodging tolerance in an artificial environment. [ABSTRACT FROM AUTHOR]

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Food security is one of the main directions of ensuring the country's national security. The purpose of this study is to evaluate the collection of the main varieties of wheat cultivated in Iraq, according to a complex of morphological and physiological characteristics, along with the determination of grain quality indicators, and to identify the most promising varieties into the breeding process. This experiment was conducted in the fields of the College of Agricultural Engineering Sciences, University of Baghdad, during 2020-21 and 2021-22 by planting 10 genotypes of soft wheat 5 Russian genotypes viz.; - Mors-1, Tymur, Medved, Astrak, Varon-39and 5 Iraqi genotypes viz., Ibaa-99, Tamuz-3, Abigrab-3, Iraq and Ibaa-95. The experiment was designed as a randomized complete block design (RCBD) with one factor and three replicates. The results showed significant differences in the effect of genotypes on the studied traits. Russian genotype Astrak was the best in average plant height with an average of 84.8cm and 82.8cm for both seasons, respectively, Iraqi genotype Tamuz-3 was the best in average weight of spike with an average of 2.4g and 2.8g for both seasons, respectively, the highest average in number of spikelets per spike reached to 19.5 in season 2021-22. Iraqi Genotype Iraq also recorded the highest average length of spike 9.5cm in the season 2020-21, and the best 1000 grain weight was 39.9g in season 2020-21. Iraqi Genotype Ibaa-95 recorded the best average length of spike 9.6 cm in the 2021-22 season and the best number of spikelets per spike reached to 14.2 in the season 2020-21 and the best number of grains, spike was 48.3 grains in season 2021-22. Genotype Abigrab-3 also recorded the highest average number of grains reached 40.4 grains in the season 2020-21, and recorded the best weight of 1000 grains reached 42.3g in the season 2021. Genotype Tymur recorded the best weight of 1000 grains reached 39.9g in season 2020-21, and recorded the best weight of spike 2.7g and the best weight of grain/spike 2g. [ABSTRACT FROM AUTHOR]

Wheat, prized for its economic significance, is the predominant crop globally. However, drought stress has emerged as a critical constraint in wheat production, increasingly limiting growth and productivity across major wheat-growing regions worldwide. Therefore, the present study assesses the impact of trace elements silicon, zinc, and manganese on the morphological characteristics of seed germination in spring soft wheat varieties (Taimas, Granny) under both normal and drought stress conditions in 2023. To achieve this, wheat seeds were subjected to varying concentrations of microelements (Si+Zn+Mn) during germination under controlled drought and regular conditions. The most significant beneficial combined effect of the three metals was observed when Si (0.25) + Zn (0.5) + Mn (0.5) was present at a concentration level, resulting in improvements in key germination parameters such as the germination index (GI) and the shoot viability index (SVI). Under drought stress conditions, utilizing the ideal concentrations of trace elements led to a notable increase in germination rates, ranging from 94.07% to 95.23%. The findings indicated that the presence of trace elements resulted in a suppressive impact, which became evident as the concentration of metals increased in the measurements of roots, shoots, and the phytotoxicity index. [ABSTRACT FROM AUTHOR]

A multiplicity of substantial disruptions in the physiological systems of the wheat crop (Triticum aestivum L.) are the result of a potassium deficiency.The foliar application of potassium improves the quality of wheat and the production of grains for end-use purposes. This study was carried out during the growing seasons of 2021-22 to investigate the response of winter wheat cultivars to foliar application of potassium (0, 1, and 2 g/L), at two growth stages (green up and heading) on the grain yield (t/ha), protein content (%), specific weight and plant vegetative indicators (chlorophyll content, flag leaf area and plant height). Foliar applications of potassium fertilizer were implemented at concentrations of (0, 1 and 2 g/L). The treatments were applied at both the tillering and flowering stages. Potassium treatments, wheat cultivars, and their interactions significantly differed in most measured parameters. Application of 2g/L of K increases grain yield, protein content, and plant height than 0, 1 g/L by 5.51 t/ha, 10.52% and 95.60 cm, respectively. Foliar application of nano-potassium timed at both tillering and flowering stages would be beneficial in improving the yield and its component. Furthermore, the various trait responses of cultivars to K application can be attractive to wheat breeders for selection. [ABSTRACT FROM AUTHOR]

The rice and wheat yields in the western Terai region of Nepal over the past four decades have been drastically reduced mainly by climatic anomalies such as fluctuating temperatures, decreased solar radiation, uneven and erratic rainfall, drought and so on. NASA-POWER derived weather data of Dumkauli in Nawalparasi (27.68° N, 84.13° E) and of Taulihawa in Kapilbastu (27.55° N, 83.0667° E) districts in western Terai region of Nepal for the past four decades (1984/85-2022/23) were downloaded, validated with the recorded weather data of Department of Hydrology and Meteorology (DHM) and studied the trends of climatic variability. Furthermore, the trend analysis for the grain yield of rice in Nawalparasi and wheat yield in Kapilvastu was drawn with the historical data sets of maximum and minimum temperatures and rainfall. Positive correlations between grain yields and minimum temperature and rainfall each showed acceptable coefficient of determinations (R²) for both of the crops. The correlation between precipitation and observed rice yield estimated was 0.71. Similarly, the correlation coefficient of minimum temperature and wheat yield was 0.272. The multi-year predicted rice and wheat yields using the historical weather data and by the use of the IPCC (2007) scenario embedded in the DSSAT crop model showed that yield of the both crops could be sustained with the use of the current crop cultivars only for a few years. Climatic index, mainly temperature was found to be more sensitive to wheat production, and the rainfall to rice production in the Nepalese western Terai region. This study suggests for the development of high yielding climate change-ready rice and wheat cultivars to feed the increasingly growing Nepalese population. [ABSTRACT FROM AUTHOR]

Zinc (Zn) fertilization of hard red and soft white winter wheat (Triticum aestivum L.) is uncommon in the low precipitation zone of the inland Pacific Northwest. It is uncommon because there have been no indications of deficiency. Soil test data, however, show Zn levels have been declining over time. We conducted a four‐site‐year experiment to evaluate effects of fertilization on early‐season tissue Zn concentration (TZC), dry matter accumulation (DMA), Zn uptake (ZNU), the grain test weight (TWT), protein content (PRO), and yield (YLD) of two regionally adapted cultivars. Planting occurred late in September or early in October. Zinc fertilizer, placed with the seed while planting, was applied at rates of 0 and 5 kg Zn ha−1. Application of 5 kg Zn ha−1 increased TZC and ZNU at one of two sites. There were corresponding trends of increased DMA and improved YLD. Response to fertilization occurred on a relatively shallow soil that had a diethylenetriamine‐pentaacidic acid–extractable Zn test level of 0.3 mg kg−1. Core Ideas: Zinc fertilization increased tissue Zn concentration and Zn uptake in winter wheat (Triticum aestivum L.) at one of two experimental sites.There were corresponding treatment‐induced trends of increased dry matter accumulation and improved grain yield.Response to fertilization occurred on a relatively shallow soil that had a diethylenetriamine‐pentaacidic acid‐extractable soil test Zn level of 0.3 mg kg−1.Response to fertilization may have been due, at least in part, to the near‐surface position of carbonates and alkalinity. [ABSTRACT FROM AUTHOR]

Integrated crop‐livestock systems (ICLS) bring diversity to agricultural systems, enhancing soil ecosystem services, food production, and environmental sustainability. Resource utilization efficiency practices under semiarid ecoregions include dual systems that grow wheat (Triticum aestivum L.) for both grain and grazing (G) and recently complementary to wheat dual systems, cover crops (CC) for feeding both the soil and cattle during the fallow period. The latter continues to generate interest and there is a paucity of information on associated biochemical cycles. The objective was to evaluate the impact of CC and grazing thereof on soil microbiota structure, diversity, proliferation, and nutrient cycling. Introducing CC to no‐till (NT [NTC]) and grazing CC (NTCG [ICLS]), increased total PLFA biomass (TPB) for ungrazed CC (NTC) by 12%, and grazed CC (NTCG [ICLS]) by 20%; total bacteria biomass (TBB) by 10% for NTC and 24% for NTCG; total fungal biomass (TFB) by 9% for NTC and 21% for NTCG. The CC significantly increased Gram (−) bacteria biomass by 17% and 34% for NTC and NTCG, respectively; the CC significantly increased Gram (+) bacteria biomass by 6% and 12% for NTC and NTCG, respectively; and the CC significantly increased arbuscular mycorrhizal fungi by 55% and 89% for NTC and NTCG respectively, compared to NT fallow practice. Significant correlations were observed for NO3−–N, NH4+–N, water‐extractable organic nitrogen, total nitrogen, and water‐extractable organic carbon with TPB, TBB, and TFB using Haney soil health methods. Based on the measured parameters, the soil health status decreased in the order NTCG > NTC > NT > CT, where NT is the no‐till, C is the cover crop, G is the grazing, and CT is the conventional‐till. Grazing CC enhanced soil bacterial biomass over CC in solitude. Core Ideas: All cover crops (CC) increased actinomycetes, arbuscular mycorrhizal fungi, and Gram (−) and (+) and undifferentiated biomasses.Grazed CC further increased actinomycetes, Gram (−), and undifferentiated biomasses compared to ungrazed CC.High correlations for phospholipid‐linked fatty acid biomass with NO3−–N, NH4+–N, water extractable organic nitrogen, total nitrogen, and water extractable organic carbon were observed. [ABSTRACT FROM AUTHOR]

The lateral root (LR) is an essential component of the plant root system, performing important functions for nutrient and water uptake in plants and playing a pivotal role in cereal crop productivity. Nitrate (NO3−) is an essential nutrient for plants. In this study, wheat plants were grown in 1/2 strength Hoagland's solution containing 5 mM NO3− (check; CK), 0.1 mM NO3− (low NO3−; LN), or 0.1 mM NO3− plus 60 mg/L 2,3,5-triiodobenzoic acid (TIBA) (LNT). The results showed that LN increased the LR number significantly at 48 h after treatment compared with CK, while not increasing the root biomass, and LNT significantly decreased the LR number and root biomass. The transcriptomic analysis showed that LN induced the expression of genes related to root IAA synthesis and transport and cell wall remodeling, and it was suppressed in the LNT conditions. A physiological assay revealed that the LN conditions increased the activity of IAA biosynthesis-related enzymes, the concentrations of tryptophan and IAA, and the activity of cell wall remodeling enzymes in the roots, whereas the content of polysaccharides in the LRP cell wall was significantly decreased compared with the control. Fourier-transform infrared spectroscopy and atomic microscopy revealed that the content of cell wall polysaccharides decreased and the cell wall elasticity of LR primordia (LRP) increased under the LN conditions. The effects of LN on IAA synthesis and polar transport, cell wall remodeling, and LR development were abolished when TIBA was applied. Our findings indicate that NO3− starvation may improve auxin homeostasis and the biological properties of the LRP cell wall and thus promote LR initiation, while TIBA addition dampens the effects of LN on auxin signaling, gene expression, physiological processes, and the root architecture. [ABSTRACT FROM AUTHOR]

Eukaryotic gene transcription is fine-tuned by precise spatiotemporal interactions between cis-regulatory elements (CREs) and trans-acting factors. However, how CREs individually or coordinated with epigenetic marks function in regulating homoeolog bias expression is still largely unknown in wheat. In this study, through comprehensively characterizing open chromatin coupled with DNA methylation in the seedling and spikelet of common wheat, we observed that differential chromatin openness occurred between the seedling and spikelet, which plays important roles in tissue development through regulating the expression of related genes or through the transcription factor (TF)-centered regulatory network. Moreover, we found that CHH methylation may act as a key determinant affecting the differential binding of TFs, thereby resulting in differential expression of target genes. In addition, we found that sequence variations in MNase hypersensitive sites (MHSs) result in the differential expression of key genes responsible for important agronomic traits. Thus, our study provides new insights into the roles of CREs in regulating tissue or homoeolog bias expression, and controlling important agronomic traits in common wheat. It also provides potential CREs for genetic and epigenetic manipulation toward improving desirable traits for wheat molecule breeding. [ABSTRACT FROM AUTHOR]

The alternative oxidase (AOX), a common terminal oxidase in the electron transfer chain (ETC) of plants, plays a crucial role in stress resilience and plant growth and development. Oat (Avena sativa), an important crop with high nutritional value, has not been comprehensively studied regarding the AsAOX gene family. Therefore, this study explored the responses and potential functions of the AsAOX gene family to various abiotic stresses and their potential evolutionary pathways. Additionally, we conducted a genome-wide analysis to explore the evolutionary conservation and divergence of AOX gene families among three Avena species (Avena sativa, Avena insularis, Avena longiglumis) and four Poaceae species (Avena sativa, Oryza sativa, Triticum aestivum, and Brachypodium distachyon). We identified 12 AsAOX, 9 AiAOX, and 4 AlAOX gene family members. Phylogenetic, motif, domain, gene structure, and selective pressure analyses revealed that most AsAOXs, AiAOXs, and AlAOXs are evolutionarily conserved. We also identified 16 AsAOX segmental duplication pairs, suggesting that segmental duplication may have contributed to the expansion of the AsAOX gene family, potentially preserving these genes through subfunctionalization. Chromosome polyploidization, gene structural variations, and gene fragment recombination likely contributed to the evolution and expansion of the AsAOX gene family as well. Additionally, we hypothesize that AsAOX2 may have potential function in resisting wounding and heat stresses, while AsAOX4 could be specifically involved in mitigating wounding stress. AsAOX11 might contribute to resistance against chromium and waterlogging stresses. AsAOX8 may have potential fuction in mitigating ABA-mediated stress. AsAOX12 and AsAOX5 are most likely to have potential function in mitigating salt and drought stresses, respectively. This study elucidates the potential evolutionary pathways of the AsAOXs gene family, explores their responses and potential functions to various abiotic stresses, identifies potential candidate genes for future functional studies, and facilitates molecular breeding applications in A. sativa. [ABSTRACT FROM AUTHOR]

Aluminum (Al) toxicity and low phosphorus availability (LP) are the top two co-existing edaphic constraints limiting agriculture productivity in acid soils. Plants have evolved versatile mechanisms to cope with the two stresses alone or simultaneously. However, the specific and common molecular mechanisms, especially those involving flavonoids and carbohydrate metabolism, remain unclear. Laboratory studies were conducted on two wheat genotypes—Fielder (Al-tolerant and P-efficient) and Ardito (Al-sensitive and P-inefficient)—exposed to 50 μM Al and 2 μM Pi (LP) in hydroponic solutions. After 4 days of stress, wheat roots were analyzed using transcriptomics and targeted metabolomics techniques. In Fielder, a total of 2296 differentially expressed genes (DEGs) were identified under Al stress, with 1535 upregulated and 761 downregulated, and 3029 DEGs were identified under LP stress, with 1591 upregulated and 1438 downregulated. Similarly, 4404 DEGs were identified in Ardito under Al stress, with 3191 upregulated and 1213 downregulated, and 1430 DEGs were identified under LP stress, with 1176 upregulated and 254 downregulated. GO annotation analysis results showed that 4079 DEGs were annotated to the metabolic processes term. These DEGs were significantly enriched in the phenylpropanoid, flavonoid, flavone and flavonol biosynthesis, and carbohydrate metabolism pathways by performing the KEGG enrichment analysis. The targeted metabolome analysis detected 19 flavonoids and 15 carbohydrate components in Fielder and Ardito under Al and LP stresses. In Fielder, more responsive genes and metabolites were involved in flavonoid metabolism under LP than Al stress, whereas the opposite trend was observed in Ardito. In the carbohydrate metabolism pathway, the gene and metabolite expression levels were higher in Fielder than in Ardito. The combined transcriptome and metabolome analysis revealed differences in flavonoid- and carbohydrate-related genes and metabolites between Fielder and Ardito under Al and LP stresses, which may contribute to Fielder's higher resistance to Al and LP. The results of this study lay a foundation for pyramiding genes and breeding multi-resistant varieties. [ABSTRACT FROM AUTHOR]

Understanding the mechanisms that regulate plant root growth under soil drying is an important challenge in root biology. We observed that moderate soil drying promotes wheat root growth. To understand whether metabolic and hormonic changes are involved in this regulation, we performed transcriptome sequencing on wheat roots under well-watered and moderate soil drying conditions. The genes upregulated in wheat roots under soil drying were mainly involved in starch and sucrose metabolism and benzoxazinoid biosynthesis. Various plant hormone-related genes were differentially expressed during soil drying. Quantification of the plant hormones under these conditions showed that the concentrations of abscisic acid (ABA), cis-zeatin (CZ), and indole-3-acetic acid (IAA) significantly increased during soil drying, whereas the concentrations of salicylic (SA), jasmonic (JA), and glycosylated salicylic (SAG) acids significantly decreased. Correlation analysis of total root length and phytohormones indicated that CZ, ABA, and IAA are positively associated with wheat root length. These results suggest that changes in metabolic pathways and plant hormones caused by moderate soil drying help wheat roots grow into deeper soil layers. [ABSTRACT FROM AUTHOR]

Wheat rusts, including leaf, stripe, and stem rust, have been a threat to global food security due to their devastating impact on wheat yields. In recent years, significant strides have been made in understanding wheat rusts, focusing on disease spread mechanisms, the discovery of new host resistance genes, and the molecular basis of rust pathogenesis. This review summarizes the latest approaches and studies in wheat rust research that provide a comprehensive understanding of disease mechanisms and new insights into control strategies. Recent advances in genetic resistance using modern genomics techniques, as well as molecular mechanisms of rust pathogenesis and host resistance, are discussed. In addition, innovative management strategies, including the use of fungicides and biological control agents, are reviewed, highlighting their role in combating wheat rust. This review also emphasizes the impact of climate change on rust epidemiology and underscores the importance of developing resistant wheat varieties along with adaptive management practices. Finally, gaps in knowledge are identified and suggestions for future research are made. This review aims to inform researchers, agronomists, and policy makers, and to contribute to the development of more effective and sustainable wheat rust control strategies. [ABSTRACT FROM AUTHOR]

The optimized sowing method and appropriate seed rate can improve wheat N use efficiency. However, the interactive effect of the sowing method and seed rate on N use efficiency, particularly N uptake and root length density, are unclear. A field experiment was conducted for two growing seasons in southern Shanxi province, China, using a split-plot design with the sowing method as the main plot (wide-belt sowing, WBS, and conventional narrow-drill sowing, NDS) and seed rate as the sub-plot (100–700 m−2). Our results showed that WBS had a significant and positive effect on N use efficiency (yield per unit of available N from the fertilizer and soil, by 4.7–15.4%), and the relatively higher seed rates (>300 or 400 m−2) enlarged the effects. The N use efficiency increases under WBS were mainly attributed to the increases in N uptake before anthesis, resulting from the promoted nodal roots per plant and per unit area, and root length density in the top layer(s). WBS promoted N translocation and the N harvest index, resulting in equivalent grain protein concentration and processing quality compared to NDS. Thus, adopting higher seed rates (>300 m−2) combined with WBS is recommended for achieving greater N efficiencies while maintaining the grain protein concentration and processing quality of winter wheat. [ABSTRACT FROM AUTHOR]

Nano-biochar is a source of blackish carbonaceous material, a prerequisite for sustainable crop productivity. By using a variety of feedstock materials, nanobiochar synthesis can be employed via pyrolysis. Therefore, a project was initiated to explore the morpho-physio-biochemical alteration at the vegetative stage of wheat crops after the foliar application of nanobiochar suspension (NBS). This investigation was conducted at the Botanical Research Area of the University of Lahore in a randomized complete block design (RCBD) arrangement, with four treatments (0, 1, 3, and 5% NBS) by maintaining three replications for each treatment using the wheat variety "Zincol". Nano biochar suspension in above mentioned concentrations were foliarly applied at the end of tillering/beginning of leaf sheath elongation of wheat seedlings to assess the morphological changes (root length, shoot length, number of leaves, fresh biomass/plant, dry biomass/plant), physio-biochemical alterations (total free amino acids, total sugars, chlorophyll content, protein, phenols, flavonoids), and nutrient uptake (Na, K, Ca, Mg, N, P contents. Our findings indicate that the foliar application of 3% NBS yielded the most favorable results across all measured attributes. Furthermore, Treatment-4 (5% NBS) specifically improved certain traits, including leaf area, total soluble proteins, and leaf calcium content. Finally, all NBS resulted in a decrease in carotenoid and sodium content in wheat seedlings. [ABSTRACT FROM AUTHOR]

Warming and drying trends in the Mediterranean Basin exacerbate regional water scarcity and threaten agricultural production, putting global food security at risk. This study aimed to review the most significant research on future water availability for the Mediterranean agricultural sector under climate change (CC) scenarios published during 2009–2024. Two searches were performed in the Scopus and Web of Science databases, to which previously identified significant studies from different periods were also added. By applying a methodology duly protocoled in the PRISMA2020-based guideline, a final number of 44 particularly relevant studies was selected for review. A bibliometric analysis has shown that most of the published research was focused on Southwestern European countries (i.e., Spain, Italy, Portugal) and grapevine and olive tree crops. Overall, the reviewed studies state that future Mediterranean water reserves may not meet agricultural water demands, due to reduced reservoir inflows and higher irrigation demands under future CC and socioeconomic scenarios. Regarding adaptation measures to improve water-use management in agriculture, the majority of the reviewed studies indicate that the use of integrated modelling platforms and decision–support systems can significantly contribute to the development and implementation of improved water/land-management practices. [ABSTRACT FROM AUTHOR]

The objective of this study was to evaluate the effects of durum wheat separately substituted with flours of Abakaliki and Ofada rice varieties, and the optimum composite subsequent supplemented with defatted pigeon pea, on the quality attributes of pasta. The pasta, produced using standard methods, dried at 70 °C for 8 h, were evaluated for colour, proximate composition, functional, cooking, textural, and sensory attributes. Durum wheat flours separately substituted with flours (0–60%) of Abakaliki and Ofada rice varieties, resulted in acceptable pasta from the durum wheat: rice (80:20) mix. Subsequently, the durum wheat: rice mix (80:20) was supplemented with defatted pigeon pea (0–40%) to produce optimal pasta. Supplementation of durum wheat: rice (80:20) mix with defatted pigeon pea significantly increased protein (25.3–35.31%), dietary fibre (0.98–1.70%), cooking time (8.15–9.15 min), cooking loss (1.00–1.70%) and cooking yield (196.5–236.5%) of the pasta. These values were higher than wheat-rice pasta without pigeon pea flour which had lower protein (9.52–12.09%) and fibre (0.70–1.65%) contents. Pasta produced using the durum wheat: rice blends (80:20) supplemented with different ratios of pigeon pea mix showed good optimum cooking time (9.00 min), cooking yield (225%), colour (CIE L* = 43.91, a* = 2.08, b* = 13.74), hardness (111.80 N) and overall acceptability (5.75–6.70). Substitution of durum wheat with Abakaliki and Ofada rice varieties (20%), and blending of the composite (80:20) with pigeon pea (20%) for pasta manufacture showed improved pasta quality, which could lead to reduced pressure on durum wheat consumption and development of new products for local palate. [ABSTRACT FROM AUTHOR]

Wheat is the predominant crop worldwide, contributing approximately 20% of protein and calories to the human diet. However, the yield potential of wheat faces limitations due to pests, diseases, and abiotic stresses. Although conventional breeding has improved desirable traits, the use of modern transgenesis technologies has been limited in wheat in comparison to other crops such as maize and soybean. Recent advances in wheat gene cloning and transformation technology now enable the development of a super wheat consistent with the One Health goals of sustainability, food security, and environmental stewardship. This variety combines traits to enhance pest and disease resistance, elevate grain nutritional value, and improve resilience to climate change. In this review, we explore ways to leverage current technologies to combine and transform useful traits into wheat. We also address the requirements of breeders and legal considerations such as patents and regulatory issues. [ABSTRACT FROM AUTHOR]

With an increase in the frequency of hot-dry-windy weather and reported significant increase in winter wheat (Triticum aestivum L.) in-season average temperatures, it is important to understand how soil management affects yield stability. This study quantified the combined effects of tillage and fertilizer-N on winter wheat yield stability in a wheat–sorghum [Sorghum bicolor (L.) Moench]–fallow crop rotation. The research was conducted from 1975 to 2022 and the experimental design was a randomized complete block with a split-split-plot arrangement. Crop phases were the main plots, tillage (conventional tillage [CT], reduced tillage [RT], and no-tillage [NT]) in the sub-plot, and N application rates (0, 22, 45, and 67 kg N ha−1 or 0, 45, 90, and 134 kg N ha−1) in the sub-sub-plot. Results showed winter wheat yield under NT increased by 0.8 Mg ha−1, compared with about 1.1 Mg ha−1 for CT and RT, when environmental average increased by 1 Mg ha−1 for N rates ≤90 kg ha−1. Yields with CT and RT increased by 0.8 Mg ha−1, compared with about 1.1 Mg ha−1 rate for NT, when environmental average increased by 1 Mg ha−1 for N >90 kg ha−1. In 30%–52% of the time, CT wheat yield was greater than NT, but yield advantage with CT decreased as fertilizer-N rate increases. Yield stability of winter wheat varied by tillage and fertilizer rate. We concluded that NT wheat required greater N rates to reach the same yield potential as CT and RT, and long-term CT or RT wheat at 45 kg N ha−1 was most stable [ABSTRACT FROM AUTHOR]

Various agronomic practices can affect the processes of aboveground dry matter accumulation (source) and grain filling (sink), resulting in yield differences. Improved source-sink relationships can facilitate the production and accumulation of assimilates to increase the productivity of winter wheat (Triticum aestivum L.). A two-season field experiment was undertaken on winter wheat during 2020–2021 and 2021–2022. In a split-split-plot design with three replicates (randomized blocks), we compared two planting modes (ridge-furrow planting with plastic mulching [RFPM]; traditional flat planting [TF]), two complementary irrigation levels (I30+30: 30+30 mm; I0: no irrigation), and three planting densities (D1, D2, and D3: 240, 360, and 480 plants m−2). The results showed that RFPMI30+30 significantly increased maximum yield by 28.5% compared with TFI0. Although D3 increased the number of effective spikes per unit area and duration of grain filling compared to D2, it reduced the number of grains per spike, 1000-grain weight, and average filling rate. Compared to TF and I0, RFPM and I30+30 improved the sink/source ratio by 5.3% and 6.5%, respectively. Grain yield peaked at D2 in the RFPM and at D3 in the TF. Medium planting density (D2) and complementary irrigation (I30+30) during the wintering and reviving periods under RFPM can achieve better source-sink balance relationships and the maximum grain yield of winter wheat. Overall, we believe that in most cases, wheat yields are source-limited and can be improved by ridge-furrow planting with plastic mulching, complementary irrigation, and planting density regulation. [ABSTRACT FROM AUTHOR]

MicroRNAs (miRNAs) are recognized as key molecular regulators in most of intracellular processes essential for plant adaptation to environmental changes. microRNAs can mediate regulation of gene expression involved in development, acquisition of nutrients, defense and interactions with soil microorganisms to enhance stress tolerance of plants. Accumulating evidences indicate that microRNAs are also transferred within cells, organs or whole plant and released in soil as stress signals of the plant-microbiome communication. However, little information is available about how mobile microRNAs are conveyed from plants to the rhizosphere. To understand whether this intriguing phenomenon occurs through root secretion, morphological changes, Peroxidase (POX), superoxide dismutase (SOD) and catalase (CAT) antioxidant enzymes activities, as well as the expression profiles of developmental and oxidative stress responsive microRNAs were analyzed in root tissues and exudates collected from wheat (triticum aestivum) exposed to bisphenol A (BPA) at low and high concentrations (0.1 and 5000 mg. kg−1 soil). BPA contamination significantly affected aerial and root biomass, and miR164, miR167 and miR398 expression in roots of the group that received the highest dose. The presence of miR156, miR164, miR167 was detected in root exudates of controls and contaminated plants while BPA exposure increased miR 167 levels in exudates at high dose. Collectively, this experiment provided first results reporting microRNAs regulatory network participation in the BPA stress response of wheat. The identification of microRNAs as integral component of the root exudates will extend our knowledge about the molecular signaling in plant—soil microbiome interactions. [ABSTRACT FROM AUTHOR]

Fusarium graminearum causes Fusarium head blight (FHB) disease in wheat worldwide. Although F. graminearum is reported to secrete several effectors, their role in virulence and pathogenicity is unknown. The study aimed at identifying candidate genes with a role in pathogenicity and virulence using two different host systems, Arabidopsis thaliana and wheat, challenged with F. graminearum TN01. Detached leaf assay and histological studies revealed the virulent nature of TN01. A genome-wide in silico search revealed several candidate genes, of which 23 genes were selected based on reproducibility. Gene expression studies by reverse transcriptase–polymerase chain reaction (RT-PCR) in leaf tissues of Arabidopsis and the two wheat genotypes, the susceptible (Sonalika) and the resistant (Nobeoka Bozu/Nobeoka), compared with mock-treated controls in a time-course study using fungal- and plant-specific genes as internal controls revealed that these genes were differentially regulated. Further, expression of these candidates in F. graminearum–inoculated Sonalika and Nobeoka spikes compared with mock-treated controls revealed their role in pathogenicity and virulence. Gene ontology studies revealed that some of these secretory proteins possessed a role in apoptosis and ceratoplatanin and KP4 killer toxin syntheses. A three-dimensional protein configuration was performed by homology modeling using trRosetta. Further, real-time quantitative PCR (RT-qPCR) studies in F. graminearum–inoculated Arabidopsis and wheat at early time points of inoculation revealed an increased expression of the majority of these genes in Sonalika, suggesting their possible role in pathogenicity, whereas low mRNA abundance was observed for 11 of these genes in the resistant genotype, Nobeoka, compared with Sonalika, indicating their role in virulence of F. graminearum. [ABSTRACT FROM AUTHOR]

Introduction: The association between food protein-induced enterocolitis syndrome (FPIES) and wheat ingestion in children with celiac disease is unknown at this time. Methods: We present seven cases of children with celiac disease who presented with symptoms of wheat-triggered acute FPIES (a-FPIES). An oral food challenge (OFC) with wheat allergen followed by 4 h of observation was performed. Activation of innate system cells was measured at baseline (T0), during symptoms (Ts), and 4 h after symptom onset (Ts + 4). A panel of human inflammatory cytokines was also performed. Results: All patients reacted to the first allergen dose. Three patients experienced a decrease of 30 mm Hg in systolic blood pressure and tachycardia and required hemodynamic resuscitation. Neutrophilia and a decrease in eosinophil count were evident at 4 h after symptom onset. At 4 h after symptom onset, cytokines (IL-6 and IL-8, and to a lesser degree, IL-10) were elevated. Conclusion: In a small sample of celiac patients with wheat exposure in an OFC, symptoms and acute immunological changes in serum inflammatory cytokine profile were consistent with a-FPIES. [ABSTRACT FROM AUTHOR]

Low-temperature flooding and ice encasement (LTFIE) cause variable survival of winter wheat (Triticum aestivum L.) in Ontario, which limits the adoption of wheat into crop rotations by growers. The development of novel cultivars capable of withstanding LTFIE is a promising avenue for improvement, but the methods used to assess the survival of winter wheat under LTFIE are restricted. This study developed updated methods to determine the survival of wheat cultivars under LTFIE using controlled environments and, to our knowledge, is the first method since the 1980s to use Canadian eastern soft red winter wheat (CESRW) to conduct cold tolerance studies. Chamber-acclimated plants of AC Carberry (spring wheat control), Branson (CESRW), CM614 (CESRW), and Norstar (hardy Canadian western red winter control) cultivars were used to estimate the days (LD50) and temperature (LT50) to reach 50% mortality under ice and without ice treatments. Norstar had the longest LD50 at 33 days, Branson and CM614 had similar LD50 of 18 and 20 days, and AC Carberry did not reach an LD50 as it died early in both treatments. The LT50 of each cultivar was different; Norstar had the lowest LT50 (−13.6 °C day 0 and −13.2 °C day 7), and AC Carberry had the highest LT50 (−6.6 °C day 0 and −2.7 °C day 7). The detailed methods developed in this study were more reliable compared to older methods based on the more accurate reported LD50 and LT50 of the cultivars, therefore, these methods can be used to screen winter cereals for LTFIE in the future. [ABSTRACT FROM AUTHOR]