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Natural plant populations are polymorphic and show intraspecific variation in resistance properties against pathogens. The activation of the underlying defence responses can depend on variation in perception of pathogen-associated molecular patterns or elicitors. To dissect such variation, we evaluated the responses induced by laminarin (a glucan, representing an elicitor from oomycetes) in the wild tomato species Solanum chilense and correlated this to observed infection frequencies of Phytophthora infestans. We measured reactive oxygen species burst and levels of diverse phytohormones upon elicitation in 83 plants originating from nine populations. We found high diversity in basal and elicitor-induced levels of each component. Further we generated linear models to explain the observed infection frequency of P. infestans. The effect of individual components differed dependent on the geographical origin of the plants. We found that the resistance in the southern coastal region, but not in the other regions, was directly correlated to ethylene responses and confirmed this positive correlation using ethylene inhibition assays. Our findings reveal high diversity in the strength of defence responses within a species and the involvement of different components with a quantitatively different contribution of individual components to resistance in geographically separated populations of a wild plant species. [ABSTRACT FROM AUTHOR]

The wild tomato species Solanum chilense is divided into geographically and genetically distinct populations that show signs of defense gene selection and differential phenotypes when challenged with several phytopathogens, including the oomycete causal agent of late blight Phytophthora infestans. To better understand the phenotypic diversity of this disease resistance in S. chilense and to assess the effect of plant genotype versus pathogen isolate, respectively, we evaluated infection frequency in a systematic approach and with large sample sizes. We studied 85 genetically distinct individuals representing nine geographically separated populations of S. chilense. This showed that differences in quantitative resistance can be observed between but also within populations at the level of individual plants. Our data also did not reveal complete immunity in any of the genotypes. We further evaluated the resistance of a subset of the plants against P. infestans isolates with diverse virulence properties. This confirmed that the relative differences in resistance phenotypes between individuals were mainly determined by the plant genotype under consideration with modest effects of pathogen isolate used in the study. Thus, our report suggests that the observed quantitative resistance against P. infestans in natural populations of a wild tomato species S. chilense is the result of basal defense responses that depend on the host genotype and are pathogen isolate‐unspecific. [ABSTRACT FROM AUTHOR]

Natural plant populations encounter strong pathogen pressure and defence-associated genes are known to be under selection dependent on the pressure by the pathogens. Here, we use populations of the wild tomato Solanum chilense to investigate natural resistance against Cladosporium fulvum, a well-known ascomycete pathogen of domesticated tomatoes. Host populations used are from distinct geographical origins and share a defined evolutionary history. We show that distinct populations of S. chilense differ in resistance against the pathogen. Screening for major resistance gene-mediated pathogen recognition throughout the whole species showed clear geographical differences between populations and complete loss of pathogen recognition in the south of the species range. In addition, we observed high complexity in a homologues of Cladosporium resistance (Hcr) locus, underlying the recognition of C. fulvum, in central and northern populations. Our findings show that major gene-mediated recognition specificity is diverse in a natural plant-pathosystem. We place major gene resistance in a geographical context that also defined the evolutionary history of that species. Data suggest that the underlying loci are more complex than previously anticipated, with small-scale gene recombination being possibly responsible for maintaining balanced polymorphisms in the populations that experience pathogen pressure. [ABSTRACT FROM AUTHOR]

• Background and Aims Defective hybrid seed development in angiosperms might mediate the rapid establishment of intrinsic post-zygotic isolation between closely related species. Extensive crosses within and among three lineages of wild tomatoes (Solanum section Lycopersicon) were performed to address the incidence, developmental timing and histological manifestations of hybrid seed failure. These lineages encompass different, yet fairly recent, divergence times and both allopatric and partially sympatric pairs. • Methods Mature seeds were scored visually 2 months after hand pollinations, and viable-looking seeds were assessed for germination success. Using histological sections from early-developing seeds from a sub-set of crosses, the growth of three major seed compartments (endosperm, embryo and seed coat) was measured at critical developmental stages up to 21 d after pollination, with a focus on the timing and histological manifestations of endosperm misdevelopment in abortive hybrid seeds. • Key Results For two of three interspecific combinations including the most closely related pair that was also studied histologically, almost all mature seeds appeared 'flat' and proved inviable; histological analyses revealed impaired endosperm proliferation at early globular embryo stages, concomitant with embryo arrest and seed abortion in both cross directions. The third interspecific combination yielded a mixture of flat, inviable and plump, viable seeds; many of the latter germinated and exhibited near-normal juvenile phenotypes or, in some instances, hybrid necrosis and impaired growth. • Conclusions The overall results suggest that near-complete hybrid seed failure can evolve fairly rapidly and without apparent divergence in reproductive phenology/biology. While the evidence accrued here is largely circumstantial, early-acting disruptions of normal endosperm development are most probably the common cause of seed failure regardless of the type of endosperm (nuclear or cellular). [ABSTRACT FROM AUTHOR]

A holistic approach was used to investigate the hormonal profile in relation with osmotic adjustment under salinity in Solanum lycopersicum and its halophyte wild relative Solanum chilense . Plants were subjected to 125 mM NaCl for 7 days. Solanum chilense displayed a contrasting behaviour comparatively to S. lycopersicum , not only for mineral nutrition, but also regarding the modalities of osmotic adjustment and phytohormonal profiling. The extent of osmotic adjustment was higher in S. chilense than in S. lycopersicum. Ions K + and Na + were the major contributors of osmotic adjustment in S. chilense , accounting respectively for 47 and 60% of osmotic potential. In contrast the contributions of proline and soluble sugars remained marginal for the two species although salt-induced accumulation of proline was higher in S. lycopersicum than in S. chilense . Both species also differed for their hormonal status under salinity and concentrations of most hormonal compounds were higher in S. chilense than in S. lycopersicum . Interestingly, salicylic acid, ethylene and cytokinins were positively correlated with osmotic potential in S. chilense under salinity while these hormones were negatively correlated with osmotic adjustment in S. lycopersicum . Our results suggested that the capacity to use inorganic ions as osmotica may improve salt resistance in S.chilense and that phytohormones could be involved in this process. [ABSTRACT FROM AUTHOR]

Exposure to salinity induces a burst in ethylene synthesis in the wild tomato halophyte plant species Solanum chilense . In order to gain information on the role of ethylene in salt adaptation, plants of Solanum chilense (accession LA4107) and of cultivated glycophyte Solanum lycopersicum (cv. Ailsa Craig) were cultivated for 7 days in nutrient solution containing 0 or 125 mM NaCl in the presence or absence of the inhibitor of ethylene synthesis (aminovinylglycine (AVG) 2 μM). Salt-induced ethylene synthesis in S. chilense occurred concomitantly with an increase in stomatal conductance, an efficient osmotic adjustment and the maintenance of carbon isotope discrimination value (Δ 13 C). In contrast, in S. lycopersicum , salt stress decreased stomatal conductance and Δ 13 C values while osmotic potential remained higher than in S. chilense . Inhibition of stress-induced ethylene synthesis by AVG decreased stomatal conductance and Δ 13 C in S. chilense and compromised osmotic adjustment. Solanum chilense behaved as an includer and accumulated high amounts of Na in the shoot but remained able to maintain K nutrition in the presence of NaCl. This species however did not stimulate the expression of genes coding for high-affinity K transport but genes coding for ethylene responsive factor ERF5 and JREF1 were constitutively more expressed in S. chilense than in S. lycopersicum . It is concluded that ethylene plays a key role in salt tolerance of S. chilense . [ABSTRACT FROM AUTHOR]

Background Decades of intensive tomato breeding using wild-species germplasm have resulted in the genomes of domesticated germplasm (Solanum lycopersicum) being intertwined with introgressions from their wild relatives. Comparative analysis of genomes among cultivated tomatoes and wild species that have contributed genetic variation can help identify desirable genes, such as those conferring disease resistance. The ability to identify introgression position, borders, and contents can reveal ancestral origins and facilitate harnessing of wild variation in crop breeding. Results Here we present the whole-genome sequences of two tomato inbreds, Gh13 and BTI-87, both carrying the begomovirus resistance locus Ty-3 introgressed from wild tomato species. Introgressions of different sizes on chromosome 6 of Gh13 and BTI-87, both corresponding to the Ty-3 region, were identified as from a source close to the wild species S. chilense. Other introgressions were identified throughout the genomes of the inbreds and showed major differences in the breeding pedigrees of the two lines. Interestingly, additional large introgressions from the close tomato relative S. pimpinellifolium were identified in both lines. Some of the polymorphic regions were attributed to introgressions in the reference Heinz 1706 genome, indicating wild genome sequences in the reference tomato genome. Conclusions The methods developed in this work can be used to delineate genome introgressions, and subsequently contribute to development of molecular markers to aid phenotypic selection, fine mapping and discovery of candidate genes for important phenotypes, and for identification of novel variation for tomato improvement. These universal methods can easily be applied to other crop plants. [ABSTRACT FROM AUTHOR]

Tomato yellow leaf curl disease (TYLCD) is caused by a complex of begomovirus. Breeding for resistance to this disease has mainly been based on Ty- 1 gene, derived from Solanum chilense LA1969. Commercial varieties available to date still develop symptoms and suffer yield losses with high inoculum pressure and early infections. It is of interest to incorporate in breeding programs resistance from the different available sources. Lines with resistance to TYLCD derived from S. chilense accessions LA1932, LA1960 and LA1971 were previously developed. The objectives of this work were to study the genetic control of the resistance derived from these accessions and to map the resistance loci. Response to viral infection was assayed in segregating generations derived from these sources. Results obtained were compatible with a monogenic control of resistance. A total of 94 markers were used to locate the S. chilense introgressions in each of the lines. Only the presence of a large introgression in chromosome 6 was common to all lines. Analysis of recombinants allowed localizing the resistance loci in an interval of approximately 25 cM, also common to all five families. This interval includes the region to which two previously S. chilense-derived TYLCD resistance loci have been mapped, the Ty- 1/ Ty- 3 region. This is the first report of LA1960 and LA1971-derived TYLCV resistance loci to be located on chromosome 6. Further work will be done to fine map the loci found in the present work, in order to determine if they are indeed located in the Ty- 1/ Ty- 3 region. [ABSTRACT FROM AUTHOR]

Background and Aims Two closely related, wild tomato-like nightshade species, Solanum lycopersicoides and Solanum sitiens, inhabit a small area within the Atacama Desert region of Peru and Chile. Each species possesses unique traits, including abiotic and biotic stress tolerances, and can be hybridized with cultivated tomato. Conservation and utilization of these tomato relatives would benefit from an understanding of genetic diversity and relationships within and between populations. Methods Levels of genetic diversity and population genetic structure were investigated by genotyping representative accessions of each species with a set of simple sequence repeat (SSR) and allozyme markers. Key Results As expected for self-incompatible species, populations of S. lycopersicoides and S. sitiens were relatively diverse, but contained less diversity than the wild tomato Solanum chilense, a related allogamous species native to this region. Populations of S. lycopersicoides were slightly more diverse than populations of S.sitiens according to SSRs, but the opposite trend was found with allozymes. A higher coefficient of inbreeding was noted in S. sitiens. A pattern of isolation by distance was evident in both species, consistent with the highly fragmented nature of the populations in situ. The populations of each taxon showed strong geographical structure, with evidence for three major groups, corresponding to the northern, central and southern elements of their respective distributions. Conclusions This information should be useful for optimizing regeneration strategies, for sampling of the populations for genes of interest, and for guiding future in situ conservation efforts. Key words: Microsatellites, allozymes, biogeography, Solanum lycopersicoides, Solanum sitiens, Solanum chilense, genetic diversity, tomato, Solanum section Lycopersicoides. [ABSTRACT FROM AUTHOR]

Over the past 20 years, several expeditions were made to northern Chile to collect populations of wild tomatoes ( Solanum chilense, S. peruvianum) and allied nightshades ( S. lycopersicoides, S. sitiens), and obtain information about their geographic distribution, ecology and reproductive biology. Restricted mainly to drainages of the Andean and the coastal cordillera, populations are geographically fragmented. The two nightshade species are rare and threatened by human activities. Adaptation to extreme aridity and soil salinity are evident in S. chilense and S. sitiens (the latter exhibits several xerophytic traits not seen in the tomatoes) and to low temperatures in S. lycopersicoides and S. chilense. All tested accessions are self-incompatible, with the exception of one S. peruvianum population collected at the southern limit of its distribution. Several distinguishing reproductive traits—anther color, attachment, and dehiscence, pollen size, and flower scent—suggest S. sitiens and S. lycopersicoides attract different pollinators than S. chilense and S. peruvianum. The four Solanum spp. native or endemic to Chile provide a variety of novel traits which, through hybridization and introgression with cultivated tomato, could facilitate development of improved varieties, as well as research on a variety of basic topics, including plant-pollinator interactions, abiotic stress responses, and evolution of reproductive barriers. [ABSTRACT FROM AUTHOR]

We characterized the molecular allelic variation of RNases at the self-incompatibility (SI) locus of Solanum chilense Dun. We recovered 30 S-RNase allele sequences from 34 plants representing a broad geographic sample. This yielded a species-wide estimate of 35 (95% likelihood interval 31–40) S-alleles. We performed crosses to confirm the association with SI function of 10 of the putative S-RNase allele sequences. Results in all cases were consistent with the expectation that these sequences represent functional alleles under single-locus gametophytic SI. We used the allele sequences to conduct an analysis of selection, as measured by the excess of nonsynonymous changes per site, and found evidence for adaptive changes both within the traditionally defined hypervariable regions and downstream, near the 3′-end of the molecule.Heredity (2007) 99, 553–561; doi:10.1038/sj.hdy.6801035; published online 15 August 2007 [ABSTRACT FROM AUTHOR]

Resistance to begomoviruses including bipartite Tomato mottle virus (ToMoV) and monopartite Tomato yellow leaf curl virus (TYLCV) has been introgressed to cultivated tomato ( Solanum lycopersicum) from S. chilense accessions LA1932, LA2779, and LA1938. Previous research demonstrated that three regions on chromosome 6 were associated with the resistance, two of which were required for a line to provide a high level of resistance. In the present study, we identified a large S. chilense introgression spanning markers from C2_At2g39690 to T0834 in LA2779-derived advanced breeding lines resistant to both TYLCV and ToMoV. A begomovirus resistance locus, Ty-3, was mapped to the marker interval between cLEG-31-P16 and T1079 on the long arm of chromosome 6. In addition to the Ty-3 locus, the large introgression also spans the Ty-1 region near the Mi gene, suggesting the possible coexistence and linkage of resistance alleles at both Ty-1 and Ty-3 loci in these lines. In contrast, LA1932-derived advanced breeding lines possess a much shorter introgression from cLEG-31-P16 to C2_At5g41480, which also carries a begomovirus resistance locus that is probably allelic at the Ty-3 locus. The PCR-based markers tightly linked to the Ty-3 locus as well as the markers near the Ty-1 region have been used in our breeding program for efficient selection of begomovirus resistance in the past three growing seasons and will be useful resources for tomato breeders around the world. [ABSTRACT FROM AUTHOR]