Search

A coarser model for the Gay-Berne mesogen is developed using the interaction potential from the Approximate Non-Conformal (ANC) theory. The ANC potential contains both repulsive and attractive contributions. We modify intermolecular attractions by conditioning them with a Hess-Su orientation-dependent term. This imparts an anisotropic contribution to the energy of the system. The softness parameter s of the ANC potential is probed to qualitatively identify a threshold capable of sustaining a nematic phase. We construct phase diagrams for each value of s from molecular dynamics simulations and characterise bulk samples to outline phase regions. We find that a softness parameter $ s \sim 0.6 $ s ∼ 0.6 or higher supports the emergence of a nematic phase. The stability of the nematic region is enhanced as $ s\to 1 $ s → 1 , corresponding to the conventional Lennard-Jones interaction. The stability of the nematic phase for nearly-spherical mesogens with increasing s leads to a gradual loss in spherical symmetry despite no imposed shape anisotropy. Thus, the energy anisotropy becomes more pronounced and is capable of prompting the emergence of the nematic phase in this model. [ABSTRACT FROM AUTHOR]

Starting from the Ornstein-Zernike equation the authors derive an analytical theory, at the level of pair correlation functions, which coarse grains polymer melts into liquids of interacting soft colloidal particles. Since it is analytical, the presented coarse-graining approach will be useful in developing multiscale modeling procedures to simulate complex fluids of macromolecules. The accuracy of the theory is tested by its capacity to reproduce the liquid structure, as given by the center-of-mass intermolecular total pair correlation function. The theory is found to agree well with the structure predicted by molecular dynamics simulations of the liquid described at the united atom level as well as by molecular dynamics simulations of the liquid of interacting colloidal particles. The authors perform simulations of the liquid of interacting colloidal particles having as input the potential obtained from their analytical total pair correlation function by enforcing the hypernetted-chain closure approximation. Tests systems are polyethylene melts of chains with increasing degrees of polymerization and polymer melts of chains with different chemical architectures. They also discuss the effect of adopting different conventional approximations for intra- and intermolecular monomer structure factors on the accuracy of the coarse-graining procedure, as well as the relevance of higher-order corrections to their expression. [ABSTRACT FROM AUTHOR]

We present a theoretical approach which maps polymer blends onto mixtures of soft-colloidal particles. The analytical mesoscale pair correlation functions reproduce well data from united atom molecular dynamics simulations of polyolefin mixtures without fitting parameters. The theory exactly recovers the analytical expressions for density and concentration fluctuation structure factors of soft-colloidal mixtures (liquid alloys). © 2005 American Institute of Physics. [ABSTRACT FROM AUTHOR]

Technological applications of liquid crystals have generally relied on control of molecular orientation at a surface or an interface. Such control has been achieved through topography, chemistry and the adsorption of monolayers or surfactants. The role of the substrate or interface has been to impart order over visible length scales and to confine the liquid crystal in a device. Here, we report results from a computational study of a liquid-crystal-based system in which the opposite is true: the liquid crystal is used to impart order on the interfacial arrangement of a surfactant. Recent experiments on macroscopic interfaces have hinted that an interfacial coupling between bulk liquid crystal and surfactant can lead to a two-dimensional phase separation of the surfactant at the interface, but have not had the resolution to measure the structure of the resulting phases. To enhance that coupling, we consider the limit of nanodroplets, the interfaces of which are decorated with surfactant molecules that promote local perpendicular orientation of mesogens within the droplet. In the absence of surfactant, mesogens at the interface are all parallel to that interface. As the droplet is cooled, the mesogens undergo a transition from a disordered (isotropic) to an ordered (nematic or smectic) liquid-crystal phase. As this happens, mesogens within the droplet cause a transition of the surfactant at the interface, which forms new ordered nanophases with morphologies dependent on surfactant concentration. Such nanophases are reminiscent of those encountered in block copolymers, and include circular, striped and worm-like patterns. [ABSTRACT FROM AUTHOR]

DNA hybridization plays a central role in biology and, increasingly, in materials science. Yet, there is no precedent for examining the pathways by which specific single-stranded DNA sequences interact to assemble into a double helix. A detailed model of DNA is adopted in this work to examine such pathways and to determine the role of sequence, if any, on DNA hybridization. Transition path sampling simulations reveal that DNA rehybridization is prompted by a distinct nucleation event involving molecular sites with approximately four bases pairing with partners slightly offset from those involved in ideal duplexation. Nucleation is promoted in regions with repetitive base pair sequence motifs, which yield multiple possibilities for finding complementary base partners. Repetitive sequences follow a nonspecific pathway to renaturation consistent with a molecular "slithering" mechanism, whereas random sequences favor a restrictive pathway involving the formation of key base pairs before renaturation fully ensues. [ABSTRACT FROM AUTHOR]