1. In-silico prediction of dual function of DksA like hypothetical protein in V. cholerae O395 genome.
- Author
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Dutta, Avirup, Katarkar, Atul, and Chaudhuri, Keya
- Subjects
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VIBRIO cholerae , *BACTERIAL proteins , *BACTERIAL genomes , *PROTEIN binding , *RNA polymerases , *GENETIC transformation , *BINDING sites - Abstract
Cholera, an acute infection of the small intestine, is caused by Vibrio cholerae. The present study identified a hypothetical protein in V. cholerae O395, which was predicted to be acquired through horizontal gene transfer the origin of which was found to be from a phage. Its expression was further confirmed by RT-PCR. Homology based 3D model of the hypothetical protein indicated DksA like homologue. Protein binding site of 3D-model revealed a deep cleft which may influence the dimer formation and interaction with ds-DNA molecule. Also, canonical function of direct interaction with RNA polymerase (RNAP) holoenzyme in complex with ppGpp suggests its dual role in the pathogenesis of cholera. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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