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Lepidonotopodinae is a subfamily of Polynoidae endemic to deep-sea chemosynthetic ecosystems around the world. Nevertheless, their species composition and phylogeny have only been systematically studied in hydrothermal vents of the Eastern and Western Pacific. Here, we morphologically and genetically examined worms in Lepidonotopodinae from vents across three Indian Ocean ridges, revealing two new Branchinotogluma species (B. jiaolongae sp. nov. and B. kaireiensis sp. nov.) and two new Levensteiniella species (L. pettiboneae sp. nov. and L. longqiensis sp. nov.). Primary morphological characters distinguishing them from other congeners include the number and arrangement of both pharyngeal papillae and ventral papillae. The reconstructed molecular phylogeny of Lepidonotopodinae supports a monophyletic Levensteiniella , with the two new Indian Ocean species recovered as sisters. As revealed in previous studies, a paraphyletic Branchinotogluma was also found, with the three Indian Ocean species separated into distinct clades with sister-relationships to species from the Mid-Atlantic, Alarcon Rise, and Manus Basin, respectively. This indicates three separate historical invasions to Indian Ocean vents. Our findings increase the number of Indian Ocean Lepidonotopodinae worms to seven, now the most diverse annelid group there, and help to elucidate the biodiversity, distribution, and biogeography of this subfamily in the Indian Ocean. [ABSTRACT FROM AUTHOR]

Alzheimer's disease (AD) involves degeneration of cells in the brain. Due to insidious onset and slow progression, AD is often not diagnosed until it gets progressed to a more severe stage. The diagnosis and treatment of AD has been a challenge. In recent years, high-throughput sequencing technologies have exhibited advantages in exploring the pathogenesis of diseases. However, the types of cells of the central nervous system are complex and traditional bulk sequencing cannot reflect their heterogeneity. Single-cell sequencing technology enables study at the individual cell level and has an irreplaceable advantage in the study of complex diseases. In recent years, this field has expanded rapidly and several types of single-cell sequencing technologies have emerged, including transcriptomics, epigenomics, genomics and proteomics. This review article provides an overview of these single-cell sequencing technologies and their application in AD. [ABSTRACT FROM AUTHOR]

Background: The various types of ionizing radiation and altered gravity in the space environment present a risk to humans during space missions. Changes in the space environment lead to skin diseases, affecting the status of the aviators to fly. Therefore, it is important to explore the molecular-level changes in the skin during space missions. Objectives: Bioinformatics analysis of gene arrays from hair follicle tissue of 10 astronauts was performed to explore changes in gene expression before, during and after space missions. Methods: First, STEM (Short Time-series Expression Miner) software was used to identify the expression patterns of hair follicle genes of astronauts pre-, in- and postflight. Gene Ontology Enrichment Analysis was then performed to explore the gene functions within the module. Protein–protein interaction network analysis was performed on skin-related genes. The transcriptional regulatory network within the module was constructed using the TRRUST database. The circadian rhythm-related genes within the module were screened using the MSigDB (Molecular Signatures Database). Results: Based on differential expression analysis between the two groups, there were 327 differentially expressed genes after the astronauts entered space compared with preflight, and only 54 differentially expressed genes after returning to Earth. This outcome suggests that the expression of most genes can be recovered on return to the ground, but there are a small number of genes whose expression cannot be recovered in a short period of time. Based on time series analysis, 311 genes showed increased expression on entry into space and decreased expression on return to Earth. The genes of this expression pattern were associated with skin development, keratinocyte differentiation and cornification. Ten hub genes were identified as skin-related genes within the module, as well as nine transcription factors and three circadian genes. One hundred and seventy-nine genes decreased in expression after entry into space and increased on return to Earth. By reviewing the literature, we found that four of the genes, CSCD2, HP, CXCR1 and SSTR4, are associated with skin diseases. Conclusions: Through bioinformatics analysis, we found that the space environment affects skin keratinocyte differentiation, leading to skin barrier damage and inflammatory responses, and that this effect was decreased after return to Earth. Among 10 International Space Station astronauts studied, 311 genes increased in expression after space entry and decreased after return to Earth. Genes with this expression pattern were associated with skin development, keratinocyte differentiation and cornification. We found that these hub skin-related genes are involved in skin barrier damage and inflammatory responses. [ABSTRACT FROM AUTHOR]

The South China Sea (SCS) basin is hypothesized to host distinct and bathymetrically differentiated fauna due to its semi‐enclosed basin and three‐layer circulation system. To test this hypothesis, three cow falls are artificially deployed at separate depths (655, 1604, and 3402 m) on Zhongnan seamount in the middle SCS, and the associated worms, Sirsoe spp. are selected as targets to explore their diversity, phylogeny, and zonation pattern. Analyses of collected specimens reveal three new Sirsoe species, which were then nominally described and named as S. polita sp. nov. (655 m), S. nanhaiensis sp. nov. (1604 and 3402 m), and S. feitiana sp. nov. (3402 m), and one known species (S. balaenophila lineage II). Metabarcoding analyses on cow‐fall sediments reveal seven additional Operated Taxonomic Units (OTUs) assigned to Sirsoe, increasing the Sirsoe diversity to 10 species/OTUs in the middle SCS. Their distribution along depth shows increasing diversity toward the deeper sites. Phylogenetic inferences recover S. polita closely related to S. alucia from the Southwest Atlantic, forming a lineage deeply divergent from others. The nine deep‐water species/OTUs are scattered in three distinct lineages showing closer phylogenetic relationships between 1604‐ and 3402‐m counterparts. The lineage formed by S. naihaiensis and S. feitiana is distinct from other non‐SCS congeners both morphologically and genetically. These results suggest multiple independent invasions of Sirsoe to the SCS, a new lineage potentially endemic to the SCS, and a strong zonation pattern related to depth, especially between the shallow (655 m) and the deep (1604 and 3402 m) sites. The semi‐enclosed feature combined with the physical structure of the SCS may contribute to such a pattern. This work is registered in ZooBank under: urn:lsid:zoobank.org:pub:317771C8‐42D717‐4765‐A168‐B3BE99B09FBF. [ABSTRACT FROM AUTHOR]

The biodiversity of deep-sea hydrothermal vents in the Indian Ocean remains poorly characterised compared with that of their Pacific and Atlantic counterparts. Although the Longqi hydrothermal vent field is the most extensively explored vent site on the ultra-slow-spreading Southwest Indian Ridge, it is still a source of new discoveries. Here, we report and formally describe a new peltospirid snail from Longqi – Lirapex felix sp. nov. Known from only two specimens, it differs from other named Lirapex species by a depressed spire and the lack of coil loosening on the body whorl. Examinations of the external anatomy and radular characteristics agree with its placement in Lirapex, which is also supported by a molecular phylogeny reconstructed using the barcoding fragment of the mitochondrial cytochrome c oxidase I (COI) gene. This is the fifth peltospirid snail known to inhabit the Longqi field, three of which (including Lirapex felix sp. nov.) have been found nowhere else. There is growing evidence that the Longqi field represents a biogeographically unique site among Indian Ocean vents. The discovery of Lirapex felix sp. nov. adds to the unique biodiversity of Longqi field, with implications for conservation in the light of potential deep-sea mining. This work is registered in ZooBank under: [ABSTRACT FROM AUTHOR]

The influences of N 2 content in shielding gas on microstructure and impact toughness of different zones in cold metal transfer and pulse (CMT-P) hybrid welded joint of duplex stainless steel (DSS) were systematically studied. The results showed that the N 2 -supplemented in shielding gas significantly facilitated austenite formation (weld root: 39.9%→41.2%, weld filler: 40.5%→43.7%, and heat affected zone (HAZ): 36.4%→39.6%). However, when the N 2 content in the shielding gas exceeded 4%, there was no significant change in austenite content because of reaching the solubility limit of N atoms. In addition, γ 2 precipitated both in the weld root and HAZ but not in the weld filler, which cannot be inhibited by N 2 addition in the shielding gas. Besides, a great number of Cr 2 N and dislocations in addition to γ 2 formed in the HAZ, and the content of Cr 2 N and dislocation significantly increased with the increase of N 2 content in the shielding gas. Furthermore, the HAZ exhibited the lowest toughness in comparison with other zones. In addition, with the increase of N 2 content in the shielding gas from 0% to 6%, the toughness increased first and then decreased, and reached the maximum when 4% N 2 added to the shielding gas as (weld root: 122.0 J/cm2, weld filler: 135.0 J/cm2, and HAZ: 91.8 J/cm2). According to detailed microstructure analysis and toughness level, Ar+4% N 2 was recommended as the shielding gas to join DSS by using CMT-P welding technique. [Display omitted] • There was a solubility limit of N in weld pool with N 2 addition in shielding gas. • Reheating from subsequent weld-pass was a prerequisite for γ 2 formation. • N 2 addition in shielding gas cannot inhibit γ 2 precipitation in weld root and HAZ. • Cr 2 N and dislocation in HAZ increased with N 2 addition in shielding gas. • N 2 content in shielding gas had obvious influence on toughness of welded joint. [ABSTRACT FROM AUTHOR]

• SADS-CoV N-specific monoclonal antibody (mAb) was generated and characterized. • N mAb detected SADS-CoV in infected cells. • Identified the motif 343DAPVFTPAP351 as the minimal unit of the linear B-cell epitope recognized by mAb 3E9. A swine acute diarrhea syndrome coronavirus (SADS-CoV) that causes severe diarrhea in suckling piglets was identified in Southern China in 2017. To develop an antigen that is specific, sensitive, and easy to prepare for serological diagnosis, antigenic sites in the SADS-CoV nucleocapsid (N) protein were screened. We generated and characterized an N-reactive monoclonal antibody (mAb) 3E9 from mice immunized with recombinant N protein. Through fine epitope mapping of mAb 3E9 using a panel of eukaryotic-expressed polypeptides with GFP-tags, we identified the motif 343DAPVFTPAP351 as the minimal unit of the linear B-cell epitope recognized by mAb 3E9. Protein sequence alignment indicated that 343DAPVFTPAP351 was highly conserved in different SADS-CoV strains and SADS-related coronaviruses from bat, with one substitution in this motif in HKU2-related bat coronavirus. Using mAb 3E9, we observed that N protein was expressed in the cytoplasm and was in the nucleolus during SADS-CoV replication. N protein was immunoprecipitated from SADS-CoV-infected Vero E6 cells. Taken together, our results indicated that 3E9 mAb could be a useful tool to investigate the structure and function of N protein during viral replication. [ABSTRACT FROM AUTHOR]

Background: After the eradication of smallpox in China in 1979, vaccination with the vaccinia virus (VACV) Tiantan strain for the general population was stopped in 1980. As the monkeypox virus (MPXV) is rapidly spreading in the world, we would like to investigate whether the individuals with historic VACV Tiantan strain vaccination, even after more than 40 years, could still provide ELISA reactivity and neutralizing protection; and whether the unvaccinated individuals have no antibody reactivity against MPXV at all. Results: We established serologic ELISA to measure the serum anti-MPXV titer by using immunodominant MPXV surface proteins, A35R, B6R, A29L, and M1R. A small proportion of individuals (born before 1980) with historic VACV Tiantan strain vaccination exhibited serum ELISA cross-reactivity against these MPXV surface proteins. Consistently, these donors also showed ELISA seropositivity and serum neutralization against VACV Tiantan strain. However, surprisingly, some unvaccinated young adults (born after 1980) also showed potent serum ELISA activity against MPXV proteins, possibly due to their past infection by some self-limiting Orthopoxvirus (OPXV). Conclusions: We report the serum ELISA cross-reactivity against MPXV surface protein in a small proportion of individuals both with and without VACV Tiantan strain vaccination history. Combined with our serum neutralization assay against VACV and the recent literature about mice vaccinated with VACV Tiantan strain, our study confirmed the anti-MPXV cross-reactivity and cross-neutralization of smallpox vaccine using VACV Tiantan strain. Therefore, it is necessary to restart the smallpox vaccination program in high risk populations. [ABSTRACT FROM AUTHOR]

Aim: The pattern of biodiversity and biogeography is crucial to informing management and conservation strategy. But a lack of study across multiple ridge systems, especially for the Carlsberg Ridge, has hampered the conception of the overall picture for the Indian Ocean vents, a top target for deep‐sea exploration of massive sulphides. Here, we aim to characterize fauna from three new vent fields on the Carlsberg Ridge for the first time, and answer 1) what is the biogeographic pattern for vent fauna within the Indian Ocean and 2) how does this pattern guide the future environmental management on the Indian Ocean ridges. Location: Vents on the Carlsberg Ridge (CR), Central Indian Ridge (CIR), and Southwest Indian Ridge (SWIR). Taxon: Macrofauna. Methods: Samples, still images and videos were collected from vent fields by either submersible or TV‐guided grab. A comprehensive dataset of 11 fields on Indian Ocean ridges were obtained based on taxa identification and compilation. Genetic connectivity was analysed for six species using COI sequences. A framework for identifying biogeographic regions based on beta diversity measurement βsim was employed to reveal species turnover along the Indian Ocean ridges. Results: Faunal assemblages at three new vents on the CR hosted a total of 34 species. Significant genetic differentiation was detected between southern SWIR and CIR (plus Tiancheng) for three species, and between CIR (plus Tiancheng) and CR for four species. Hierarchical clustering of βsim support division of the Indian Ocean vents into three clades. Main conclusions: Species turnover along the ridges supported the separation of Indian Ocean vents into three discrete biogeographic units, boundaries between which largely corresponded to genetic breaks for shared species with lower dispersal capabilities. The results clearly show that the conservation of Indian Ocean vents must target three provinces, simultaneously. [ABSTRACT FROM AUTHOR]

Swine acute diarrhea syndrome coronavirus (SADS-CoV) is a newly discovered enteric coronavirus. We have previously shown that the caspase-dependent FASL-mediated and mitochondrion-mediated apoptotic pathways play a central role in SADS-CoV-induced apoptosis, which facilitates viral replication. However, the roles of intracellular signaling pathways in SADS-CoV-mediated cell apoptosis and the relative advantages that such pathways confer on the host or virus remain largely unknown. In this study, we show that SADS-CoV induces the activation of ERK during infection, irrespective of viral biosynthesis. The knockdown or chemical inhibition of ERK1/2 significantly suppressed viral protein expression and viral progeny production. The inhibition of ERK activation also circumvented SADS-CoV-induced apoptosis. Taken together, these data suggest that ERK activation is important for SADS-CoV replication, and contributes to the virus-mediated changes in host cells. Our findings demonstrate the takeover of a particular host signaling mechanism by SADS-CoV and identify a potential approach to inhibiting viral spread. • SADS-CoV activated the ERK signaling pathway irrespective of viral replication. • Chemical inhibition and ERK1/2 knockdown markedly impaired SADS-CoV replication. • There were crosstalk between ERK and apoptotic pathways during SADS-CoV infection. • SADS-CoV exploits the ERK cascade to complete successful viral infection. [ABSTRACT FROM AUTHOR]

Amyotrophic lateral sclerosis (ALS) is an incurable neurodegenerative disease that primarily affects motor neurons, causing muscle atrophy, bulbar palsy, and pyramidal tract signs. However, the aetiology and pathogenesis of ALS have not been elucidated to date. In this study, a competitive endogenous RNA (ceRNA) network was constructed by analyzing the expression profiles of messenger RNAs (mRNAs) and long noncoding RNAs (lncRNAs) that were matched by 7 ALS samples and 4 control samples, and then a protein-protein interaction (PPI) network was constructed to identify the genes related to ALS. Gene Ontology (GO) was used to study the potential functions of differentially expressed mRNAs (DEmRNAs) in the ceRNA network. For the ALS and control groups, 247177 potential lncRNA-mRNA ceRNA relationship pairs were screened. Analysis of significant relationship pairs demonstrated that the PPI modules formed by the MALAT1-regulated SYNRG, ITSN2, PICALM, AP3B1, and AAK1 genes may play important roles in the pathogenesis of ALS, and these results may help to characterize the pathogenesis of ALS. [ABSTRACT FROM AUTHOR]

Mammalian orthoreoviruses (MRVs) infect almost all mammals, and there are some reports on MRVs in China. In this study, a novel strain was identified, which was designated as HLJYC2017. The results of genetic analysis showed that MRV HLJYC2017 is a reassortant strain. According to biological information analysis, different serotypes of MRV contain specific amino acid insertions and deletions in the σ1 protein. Neutralizing antibody epitope analysis revealed partial cross-protection among MRV1, MRV2, and MRV3 isolates from China. L3 gene recombination in MRV was identified for the first time in this study. The results of this study provide valuable information on MRV reassortment and evolution. [ABSTRACT FROM AUTHOR]

Objective. Liver fibrosis is a consequence of wound-healing responses to chronic liver insult and may progress to liver cirrhosis if not controlled. This study investigated the protection against liver fibrosis by isorhamnetin. Methods. Mouse models of hepatic fibrosis were established by intraperitoneal injection of carbon tetrachloride (CCl4) or bile duct ligation (BDL). Isorhamnetin 10 or 30 mg/kg was administered by gavage 5 days per week for 8 weeks in the CCl4 model and for 2 weeks in the BDL model. Protein and mRNA expressions were assayed by western blotting, immunohistochemistry, and quantitative real-time polymerase chain reaction. Results. Isorhamnetin significantly inhibited liver fibrosis in both models, inhibiting hepatic stellate cell (HSC) activation, extracellular matrix (ECM) deposition, and autophagy. The effects were associated with downregulation of transforming growth factor β1 (TGF-β1) mediation of Smad3 and p38 mitogen-activated protein kinase (MAPK) signaling pathways. Conclusion. Isorhamnetin protected against liver fibrosis by reducing ECM formation and autophagy via inhibition of TGF-β1-mediated Smad3 and p38 MAPK signaling pathways. [ABSTRACT FROM AUTHOR]

• A 4-aa insertion in the COE region of S protein forming an extra alpha helix was firstly identified in PEDV. • A 4-aa insertion in the COE region of S protein may influence the VN antibody reactivity. • PEDV LNsy was a natural recombination between GDS13 and GDS46 strains. In recent years, a novel, highly virulent variant of porcine epidemic diarrhea virus (PEDV) has emerged, causing substantial economic losses to the pork industry worldwide. In this study, a PEDV strain named LNsy was successfully isolated in China. Phylogenetic analysis based on the whole genome revealed that PEDV LNsy belonged to the G2 subtype. For the first time, a unique four amino acids (4-aa) insertion was identified in the COE region of the spike (S) protein (residues 499–640), resulting in an extra alpha helix in the spatial structure of the COE region. To determine changes in virus-neutralization (VN) antibody reactivity of the virus, polyclonal antibodies (PAbs) against the S protein of different subtypes were used in a VN test. Both PAbs against the S protein of the G1 and G2 subtype showed reduced VN reactivity to PEDV LNsy. Further, recombination analyses revealed that PEDV LNsy was the result of recombination between PEDV GDS13 and GDS46 strains at the genomic breakpoints (nt 17,959−20,594 in the alignment) in the ORF1b gene of the genomes. Pathological examination showed gross morphological pathological changes in the gut, including significant villus atrophy and shedding of the infected piglets. These results indicated that a 4-aa insertion in the COE region of the S protein may have partly altered the profiles of VN antibodies and thus it will be important to develop vaccine candidates to resist wild virus infection and to monitor the genetic diversity of PEDV. [ABSTRACT FROM AUTHOR]