1. Mutability and hypermutation antagonize immunoglobulin codon optimality.
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McGrath, Joshua J.C., Park, Juyeon, Troxell, Chloe A., Chervin, Jordan C., Li, Lei, Kent, Johnathan R., Changrob, Siriruk, Fu, Yanbin, Huang, Min, Zheng, Nai-Ying, Wilbanks, G. Dewey, Nelson, Sean A., Sun, Jiayi, Inghirami, Giorgio, Madariaga, Maria Lucia L., Georgiou, George, and Wilson, Patrick C.
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GENE expression , *IMMUNOGENETICS , *BONE marrow , *ANTIBODY formation , *INFLUENZA vaccines , *MONOCLONAL antibodies - Abstract
The efficacy of antibody responses is inherently linked to paratope diversity, as generated through V(D)J recombination and somatic hypermutation. Despite this, it is unclear how genetic diversification mechanisms evolved alongside codon optimality and affect antibody expression. Here, we analyze germline immunoglobulin (IG) genes, natural V(D)J repertoires, serum IgG, and monoclonal antibody (mAb) expression through the lens of codon optimality. Germline variable genes (IGV s) exhibit diverse optimality that is inversely related to mutability. Hypermutation deoptimizes heavy-chain (IGH) VDJ repertoires within human tonsils, bone marrow, lymph nodes (including SARS-CoV-2-specific clones), blood (HIV-1-specific clones), mice, and zebrafish. Analyses of mutation-affected codons show that targeting to complementarity-determining regions constrains deoptimization. Germline IGHV optimality correlates with serum variable fragment (VH) usage after influenza vaccination, while synonymous deoptimization attenuated mAb yield. These findings provide unanticipated insights into an antagonistic relationship between diversification mechanisms and codon optimality. Ultimately, the need for diversity takes precedence over that for the most optimal codon usage. [Display omitted] • Mutation potential antagonizes codon optimality within germline human IGV genes • Somatic hypermutation deoptimizes IGH VDJ sequences in humans, mice, and zebrafish • Mutational targeting to CDRs helps constrain deoptimization • Serum IgG-VH frequency reflects IGHV optimality, and deoptimization blunts mAb yield McGrath et al. investigate the evolutionary relationship between V(D)J mutability, somatic hypermutation, and codon optimality within immunoglobulin repertoires in order to gain a better understanding of how diversification mechanisms might impact antibody expression efficiency. [ABSTRACT FROM AUTHOR]
- Published
- 2025
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