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The distinction between shallow coral reefs and mesophotic coral ecosystems (MCEs) has not been fully clarified yet. The original definition of MCEs, by depths of 30–150 m, fixes their bathymetrical limits and fails to accommodate environmental and biological variation. Recent studies have indicated that water transparency and light availability may explain why MCEs do not occur at fixed depths but vary among localities. This study aimed to evaluate the presence and distribution of MCEs, along the central coast of Oaxaca, through optical depths and the associated benthic community. Using MODIS-Aqua satellite data (Kd490), we estimated the mesophotic optical depths monthly (z10%, z1%, z0.1%), over the last four years. In addition, to characterize benthic community structure, we conducted underwater photo quadrat surveys at two locations on the southern Mexican Pacific coast from 10 to 55 m depth. Significant differences between depths and locations were found in benthic communities. Furthermore, the lower distribution of photosynthetic taxa was different between the two locations but indicative to the z10% and z1% in both cases. Those differences were associated with the upwelling season, which reduces, drastically and differentially, the light availability for benthic communities between the two locations and limits the development of MCEs on the central coast of Oaxaca. [ABSTRACT FROM AUTHOR]

Light in the sea is one of the major factors influencing corals, with changes in light being rapid along the depth gradient. Those changes can be a potential stress factor for coral-reef organisms and affect different aspects of the coral's physiology, including its fluorescence. Fluorescence is a physical phenomenon, comprising the emission of light by a substance that has absorbed light with a different wavelength. Major hypotheses concerning the role of coral fluorescence include that of photoprotection and the facilitation of photosynthesis. We sought to further investigate some ecophysiological aspects of coral fluorescence. We focused on the effect of different light conditions on fluorescence of the coral Galaxea fascicularis and used photography, confocal microscopy, and spectral measurements to assess changes in its fluorescence. We show that fluorescence is significantly influenced by light and, therefore, by depth. Coral fluorescence increased with the increase in light intensity and when the spectrum of light was broader. Hence, we support the 'sunscreen' hypothesis and conclude that fluorescence plays a role in the coral's defense mechanism against harmful radiation. However, multiple fluorescent proteins, as found in different locations of the coral tissue, might suggest more than one functional role of fluorescence in the coral's physiology. [ABSTRACT FROM AUTHOR]

The phenomenon of coral fluorescence in mesophotic reefs, although well described for shallow waters, remains largely unstudied. We found that representatives of many scleractinian species are brightly fluorescent at depths of 50–60 m at the Interuniversity Institute for Marine Sciences (IUI) reef in Eilat, Israel. Some of these fluorescent species have distribution maxima at mesophotic depths (40–100 m). Several individuals from these depths displayed yellow or orange-red fluorescence, the latter being essentially absent in corals from the shallowest parts of this reef. We demonstrate experimentally that in some cases the production of fluorescent pigments is independent of the exposure to light; while in others, the fluorescence signature is altered or lost when the animals are kept in darkness. Furthermore, we show that green-to-red photoconversion of fluorescent pigments mediated by short-wavelength light can occur also at depths where ultraviolet wavelengths are absent from the underwater light field. Intraspecific colour polymorphisms regarding the colour of the tissue fluorescence, common among shallow water corals, were also observed for mesophotic species. Our results suggest that fluorescent pigments in mesophotic reefs fulfil a distinct biological function and offer promising application potential for coral-reef monitoring and biomedical imaging. [ABSTRACT FROM AUTHOR]

Abstract   Background Capsule endoscopy is a relatively new imaging tool for the detection of small bowel pathology. The assessment of the severity of Crohn’s disease by capsule endoscopy is not standardized and is limited by interobserver variations in interpreting the findings. Aim To develop, assess and validate a new, simple capsule endoscopy Crohn’s disease activity index (CECDAI) in order to grade the severity of small bowel capsule endoscopy findings. Methods The system involves dividing the small bowel into proximal and distal segments according to transit time and then rating each segment on the basis of three parameters: inflammation (A), extent of disease (B) and presence of strictures (C). The segmental score is calculated by multiplying the inflammation subscore by the disease-subextent score and adding the stricture subscore (A � B + C); the final score is calculated by adding the two segmental scores: CECDAI = (A1 � B1 + C1) + (A2 � B2 + C2). In the present study, four senior endoscopists (two with experience in capsule endoscopy interpretation) independently reviewed coded capsule endoscopy videos of 20 patients with Crohn’s disease and rated them according to the CECDAI. Interobserver variability was analyzed by Spearman’s correlation test. Results The CECDAI total scores for the 20 patients ranged from 0 to 26. The correlation for the total score assigned between every two observers was 0.867 (0.700−1.000 = strong degree association; WHO classification; P Conclusions The CECDAI score may serve as a convenient, reliable and reproducible diagnostic and follow-up tool for use by experienced endoscopists in the evaluation of patients with Crohn’s disease of the small bowel. [ABSTRACT FROM AUTHOR]

Mesophotic ecosystems (MEs) are characterized by the presence of light-dependent organisms, found at depths ranging from ~30 to 150 m in temperate, subtropical and tropical regions. These communities occasionally create massive reef structures with diverse but characteristic morphologies, which serve as the framework builders of those ecosystems. In many localities, MEs are physically linked with shallow and deep-sea habitats, and while taxa from both environments share this space, a unique and endemic biodiversity is also found. The main MEs studied to date are the mesophotic coral ecosystems (MCEs) and the temperate mesophotic ecosystems (TMEs), which have received increased attention during the last decade. As shallow coral reef ecosystems are among the most threatened habitats on Earth, the potential of MEs to act as refugia and contribute to the resilience of the whole ecosystem has been a subject of scrutiny. New technologies and methods have become more available to study these deeper parts of the reef ecosystems, yielding many new discoveries. However, basic gaps in knowledge remain in our scientific understanding of the global diversity of MEs, limiting our ability to recognize biogeographic patterns and to make educated decisions for the management and conservation of these ecosystems. [ABSTRACT FROM AUTHOR]

Fluorescence is highly prevalent in reef-building corals, nevertheless its biological role is still under ongoing debate. This feature of corals was previously suggested to primarily screen harmful radiation or facilitate coral photosynthesis. In mesophotic coral ecosystems (MCEs; 30-150 m depth) corals experience a limited, blue-shifted light environment. Consequently, in contrast to their shallow conspecifics, they might not be able to rely on photosynthates from their photosymbionts as their main energy source. Here, we experimentally test an alternative hypothesis for coral fluorescence: a prey-lure mechanism for plankton. We show that plankton exhibit preferential swimming towards green fluorescent cues and that compared to other morphs, higher predation rates are recorded in a green fluorescing morph of the mesophotic coral Euphyllia paradivisa. The evidence provided here - that plankton are actively attracted to fluorescent signals - indicates the significant role of fluorescence in amplifying the nutritional sink adjacent to coral reefs. Plankton show preferential swimming towards fluorescent cues compared to non-fluorescent targets in both the laboratory and the sea. Further, green fluorescence enhances predation success, suggesting a prey-luring effect of fluorescence in corals. [ABSTRACT FROM AUTHOR]

Fluorescence is highly prevalent in reef-building corals, nevertheless its biological role is still under ongoing debate. This feature of corals was previously suggested to primarily screen harmful radiation or facilitate coral photosynthesis. In mesophotic coral ecosystems (MCEs; 30-150 m depth) corals experience a limited, blue-shifted light environment. Consequently, in contrast to their shallow conspecifics, they might not be able to rely on photosynthates from their photosymbionts as their main energy source. Here, we experimentally test an alternative hypothesis for coral fluorescence: a prey-lure mechanism for plankton. We show that plankton exhibit preferential swimming towards green fluorescent cues and that compared to other morphs, higher predation rates are recorded in a green fluorescing morph of the mesophotic coral Euphyllia paradivisa. The evidence provided here - that plankton are actively attracted to fluorescent signals - indicates the significant role of fluorescence in amplifying the nutritional sink adjacent to coral reefs. Plankton show preferential swimming towards fluorescent cues compared to non-fluorescent targets in both the laboratory and the sea. Further, green fluorescence enhances predation success, suggesting a prey-luring effect of fluorescence in corals. [ABSTRACT FROM AUTHOR]

Euphyllia paradivisa is a strictly mesophotic coral in the reefs of Eilat that displays a striking color polymorphism, attributed to fluorescent proteins (FPs). FPs, which are used as visual markers in biomedical research, have been suggested to serve as photoprotectors or as facilitators of photosynthesis in corals due to their ability to transform light. Solar radiation that penetrates the sea includes, among others, both vital photosynthetic active radiation (PAR) and ultra-violet radiation (UVR). Both types, at high intensities, are known to have negative effects on corals, ranging from cellular damage to changes in community structure. In the present study, fluorescence morphs of E. paradivisa were used to investigate UVR response in a mesophotic organism and to examine the phenomenon of fluorescence polymorphism. E. paradivisa, although able to survive in high-light environments, displayed several physiological and behavioral responses that indicated severe light and UVR stress. We suggest that high PAR and UVR are potential drivers behind the absence of this coral from shallow reefs. Moreover, we found no significant differences between the different fluorescence morphs' responses and no evidence of either photoprotection or photosynthesis enhancement. We therefore suggest that FPs in mesophotic corals might have a different biological role than that previously hypothesized for shallow corals. [ABSTRACT FROM AUTHOR]

Due to increasing frequency of disturbances to shallow reefs, it has been suggested that Mesophotic Coral Ecosystems (MCEs, 30-150 m depth) may serve as a refuge for corals and a source of larvae that can facilitate the recovery of shallow degraded reefs. As such, they have received increased attention in the past decade, yet remained understudied regarding recruitment dynamics. Here we describe coral recruitment dynamics on settlement tiles and their adjacent natural habitats (10 m vs. 50 m depths) in Eilat, over a period of 5.5 years. The tiles were deployed along three sites onto 18 racks (3 at each depth and at each site). Recruitment patterns varied both temporally and spatially, ending up to two-fold higher juvenile density and higher recruitment rates at mesophotic sites. Settlement surface preference changed with depth, favoring exposed surfaces in mesophotic waters and cryptic surfaces in shallow waters. Juvenile assemblages differed between depths and were distinct from adjacent natural habitats. Over half of the recruited genera overlapped between depths. We suggest that Eilat MCEs serve as a larval sink, providing settlement grounds for shallow-reef propagules. In view of their significance, we call for the protection of these unique and distinct deep-reef habitats. [ABSTRACT FROM AUTHOR]

Aim: Coral reefs shift between distinct communities with depth throughout the world. Yet, despite over half a century of research on coral reef depth gradients, researchers have not addressed the driving force of these patterns. We present a theoretical, process‐based model of light's influence on the shallow to mesophotic reef transition as a single quantitative framework. We also share an interactive web application. Moving beyond depth as an ecological proxy will enhance research conducted on deeper coral reefs. Location: Global; subtropical and tropical coral reefs, oligotrophic and turbid coastal waters. Time period: Present day (2020). Major taxa: Scleractinia. Methods: We constructed ordinary differential equations representing the preferred light environments of shallow and mesophotic Scleractinia. We projected these as depth bands using light attenuation coefficients from around the world, and performed a sensitivity analysis. Results: We found light relationships alone are sufficient to capture major ecological features across coral reef depth gradients. Our model supports the depth limits currently used in coral reef ecology, predicting a global range for the shallow‐upper mesophotic boundary at 36.1 m ± 5.6 and the upper‐lower mesophotic boundary at 61.9 m ± 9.6. However, our model allows researchers to move past these fixed depth limits, and quantitatively predict the depths of reef zones in locations around the world. Main conclusions: The use of depth as a proxy for changes in coral reef communities offers no guidance for environmental variation between sites. We have shown it is possible to use light to predict the depth boundaries of reef zones as a continuous variable, and to accommodate this variability. Predicting the depths of reef zones in unusual light environments suggests that shallow‐water turbid reefs should be considered as mesophotic coral ecosystems. Nonetheless, the current depth‐based heuristics are relatively accurate at a global level. [ABSTRACT FROM AUTHOR]

In an endeavor to study natural systems at multiple spatial and taxonomic resolutions, there is an urgent need for automated, high-throughput frameworks that can handle plethora of information. The coalescence of remote-sensing, computer-vision, and deep-learning elicits a new era in ecological research. However, in complex systems, such as marine-benthic habitats, key ecological processes still remain enigmatic due to the lack of cross-scale automated approaches (mms to kms) for community structure analysis. We address this gap by working towards scalable and comprehensive photogrammetric surveys, tackling the profound challenges of full semantic segmentation and 3D grid definition. Full semantic segmentation (where every pixel is classified) is extremely labour-intensive and difficult to achieve using manual labeling. We propose using label-augmentation, i.e., propagation of sparse manual labels, to accelerate the task of full segmentation of photomosaics. Photomosaics are synthetic images generated from a projected point-of-view of a 3D model. In the lack of navigation sensors (e.g., a diver-held camera), it is difficult to repeatably determine the slope-angle of a 3D map. We show this is especially important in complex topographical settings, prevalent in coral-reefs. Specifically, we evaluate our approach on benthic habitats, in three different environments in the challenging underwater domain. Our approach for label-augmentation shows human-level accuracy in full segmentation of photomosaics using labeling as sparse as 0.1 % , evaluated on several ecological measures. Moreover, we found that grid definition using a leveler improves the consistency in community-metrics obtained due to occlusions and topology (angle and distance between objects), and that we were able to standardise the 3D transformation with two percent error in size measurements. By significantly easing the annotation process for full segmentation and standardizing the 3D grid definition we present a semantic mapping methodology enabling change-detection, which is practical, swift, and cost-effective. Our workflow enables repeatable surveys without permanent markers and specialized mapping gear, useful for research and monitoring, and our code is available online. Additionally, we release the Benthos data-set, fully manually labeled photomosaics from three oceanic environments with over 4500 segmented objects useful for research in computer-vision and marine ecology. [ABSTRACT FROM AUTHOR]

Most studies to date on the various life-history aspects of scleractinian corals (e.g. reproduction, connectivity, and physiology) have focused on their innate habitats. However, comprehensive data on the ability of both shallow and mesophotic corals to contend in the coming decades with the different environmental conditions they may encounter due to new habitats or environmental changes (e.g. eutrophication), are scarce. Long-term cross-transplantation experiments assessing the potential responses and acclimatization ability of corals are thus needed in order to expand our knowledge. Here we examined the survivorship and changes in the photobiological acclimatization of corals following their cross-transplantation between two different depths (5–10 m and 45 m) and two sites characterized by different abiotic conditions (i.e. light, nutrient, and sedimentation regime). This year-long in-situ experiment was performed on five depth-generalist coral species. Depth of origin and the species' particular morphology were found to be the strongest predictors of survivorship. Physiological responses occurred mainly among those corals that had been translocated from deep-to-shallow water, and were expressed in a significant reduction in chlorophyll- a concentration and algal density, as well as changes in photosynthetic parameters (e.g. minimal/maximal saturating points, E k and E m , and rETR max). Our study contributes to a better assessment of the physiological and ecological consequences of corals under acute and long-term environmental perturbations and their endurance abilities. Furthermore, it contributes to the information necessary for effective management intervention aimed at supporting the possible acclimation or rehabilitation of coral species • Corals present differential survivorship at adjacent reefs with variable conditions. • Photoacclimation enables survivorship of mesophotic corals at shallow reefs. • Corals' response to light, nutrients and sediment regimes is species-specific. • Year-long in-situ successful cross-transplantion of corals between depths and sites. • Light, nutrient and sediment regimes have a crucial role in survivorship of corals. [ABSTRACT FROM AUTHOR]

Coral communities in the Persian/Arabian Gulf (PAG) withstand unusually high salinity levels and regular summer temperature maxima of up to ~35 °C that kill conspecifics elsewhere. Due to the recent formation of the PAG and its subsequent shift to a hot climate, these corals have had only <6,000 y to adapt to these extreme conditions and can therefore inform on how coral reefs may respond to global warming. One key to coral survival in the world's warmest reefs are symbioses with a newly discovered alga, Symbiodinium thermophilum. Currently, it is unknown whether this symbiont originated elsewhere or emerged from unexpectedly fast evolution catalyzed by the extreme environment. Analyzing genetic diversity of symbiotic algae across >5,000 km of the PAG, the Gulf of Oman, and the Red Sea coastline, we show that S. thermophilum is a member of a highly diverse, ancient group of symbionts cryptically distributed outside the PAG. We argue that the adjustment to temperature extremes by PAG corals was facilitated by the positive selection of preadapted symbionts. Our findings suggest that maintaining the largest possible pool of potentially stress-tolerant genotypes by protecting existing biodiversity is crucial to promote rapid adaptation to present-day climate change, not only for coral reefs, but for ecosystems in general. [ABSTRACT FROM AUTHOR]

Abstract??Successful colonoscopy depends on good preparation of the colon before the procedure. Inadequate preparation may lead to cancelled or repeat procedures and compromise patient safety, quality of care, and cost effectiveness. The primary aim of this study was to isolate factors that affect preparation success, especially in older, more severely ill, bedridden patients. The secondary aim was to examine the possible differences in preparation quality between ambulatory and hospitalized patients and the impact of a staff educational program on the preparation of hospitalized patients for colonoscopy. The study group included 303 consecutive ambulatory patients and 104 hospitalized patients referred for colonoscopy between January and March 2002, before the department introduced an educational program on colonoscopy preparation, and 310 ambulatory patients and 105 hospitalized patients referred for colonoscopy between January and March 2003. All patients completed an ad hoc questionnaire, and the findings were compared between ambulatory and hospitalized patients and between patients treated before and after the educational program. Polyethylene glycol was used significantly more often for colonoscopy preparation in hospitalized patients than in ambulatory patients (53.1% versus 8.8%;P=.0001). The hospitalized group was characterized by more incomplete or repeated colonoscopies and poorer preparation quality. On multivariate analysis, the variables found to be independent predictors of good preparation were successful patient completion of the preparatory procedure according to instructions, colonoscopy performed for follow-up after polypectomy, and preparation with sodium phosphate. The educational intervention had no impact on the quality of preparation. In conclusion, sodium phosphate preparation and complete adherence to preparation instructions are the most important factors for successful colonoscopy preparation. Current preparatory methods for hospitalized and severely ill patients need to be revised. [ABSTRACT FROM AUTHOR]

Coral reefs are the epitome of species diversity, yet the number of described scleractinian coral species, the framework-builders of coral reefs, remains moderate by comparison. DNA sequencing studies are rapidly challenging this notion by exposing a wealth of undescribed diversity, but the evolutionary and ecological significance of this diversity remains largely unclear. Here, we present an annotated genome for one of the most ubiquitous corals in the Indo-Pacific (Pachyseris speciosa) and uncover, through a comprehensive genomic and phenotypic assessment, that it comprises morphologically indistinguishable but ecologically divergent lineages. Demographic modeling based on whole-genome resequencing indicated that morphological crypsis (across micro- and macromorphological traits) was due to ancient morphological stasis rather than recent divergence. Although the lineages occur sympatrically across shallow and mesophotic habitats, extensive genotyping using a rapid molecular assay revealed differentiation of their ecological distributions. Leveraging "common garden" conditions facilitated by the overlapping distributions, we assessed physiological and quantitative skeletal traits and demonstrated concurrent phenotypic differentiation. Lastly, spawning observations of genotyped colonies highlighted the potential role of temporal reproductive isolation in the limited admixture, with consistent genomic signatures in genes related to morphogenesis and reproduction. Overall, our findings demonstrate the presence of ecologically and phenotypically divergent coral species without substantial morphological differentiation and provide new leads into the potential mechanisms facilitating such divergence. More broadly, they indicate that our current taxonomic framework for reef-building corals may be scratching the surface of the ecologically relevant diversity on coral reefs, consequently limiting our ability to protect or restore this diversity effectively. • Widespread Indo-Pacific coral represents a cryptic species complex • Substantial ecological differentiation despite ancient morphological stasis • Current taxonomic framework for corals underestimates ecologically relevant diversity Extensive cryptic diversity is being uncovered in reef-building corals. Bongaerts et al. demonstrate through a comprehensive genomic assessment of a widespread coral that such cryptic diversity can mask ecologically and physiologically divergent species and highlight the critical need to acknowledge and start capturing this hidden diversity. [ABSTRACT FROM AUTHOR]

Antecedent topography such as relic reef terraces as well as biogenic carbonate relief-forming deposits ~30–150 m deep, referred to as mesophotic reefs, provide structural support for diverse mesophotic coral ecosystems (MCEs) that may serve as coral refuges for select light-dependent species. Although terraces at mesophotic depths are found globally, an understanding of their spatial distribution, formation, and relationship with living community composition and lithology is generally lacking. Herein, 2 × 2 m resolution bathymetry from the Gulf of Aqaba (GoA) was examined to define geomorphology features spanning mesophotic depths and compare geomorphology relationships to overlying benthic and lithologic cover. Analysis led to the production of a new map categorizing 12 geomorphology features, including upper mesophotic terraces harboring thriving MCEs. Additionally, a large collection of still imagery (1726 pictures) was obtained at 94 sites and used to define eight unique habitats at mesophotic depths and lithological and biological distribution patterns over vertical and horizontal scales. Study area benthic and lithologic cover was found to be significantly different between geomorphology features and related to GoA geomorphology as well as to seafloor depth and slope, and light attenuation. While these relationships indicated modern cover could not provide a model for producing most underlying geomorphology in the study area, results provided data needed to enhance understanding of geomorphology feature formation history and reef accretion at mesophotic depths. Study results also detailed benthic cover and geomorphology features critical for better identifying and mapping unknown MCE habitats, and for recognizing mesophotic reef spatial relationships and biodiversity patterns in the GoA. These results are especially important considering most northern GoA reefs act as potential refuges, but local anthropogenic development continually stresses shallow GoA reefs and most other shallow coral reefs around the globe continue to degrade. Unlabelled Image • A new mesophotic reef geomorphology map was created for the northern Gulf of Aqaba. • Eight habitats, useful for future mesophotic reef management, were identified. • Mesophotic reef habitats likely cover at least 13.8% of the study area. • Depth variable partially explains community composition factored by geomorphology. • Benthic/lithologic cover mainly does not provide a geomorphology formation model. [ABSTRACT FROM AUTHOR]

Mesophotic coral ecosystems (MCEs) and temperate mesophotic ecosystems (TMEs) occur at depths of roughly 30–150 m depth and are characterized by the presence of photosynthetic organisms despite reduced light availability. Exploration of these ecosystems dates back several decades, but our knowledge remained extremely limited until about a decade ago, when a renewed interest resulted in the establishment of a rapidly growing research community. Here, we present the ' mesophotic.org ' database, a comprehensive and curated repository of scientific literature on mesophotic ecosystems. Through both manually curated and automatically extracted metadata, the repository facilitates rapid retrieval of available information about particular topics (e.g. taxa or geographic regions), exploration of spatial/temporal trends in research and identification of knowledge gaps. The repository can be queried to comprehensively obtain available data to address large-scale questions and guide future research directions. Overall, the ' mesophotic.org ' repository provides an independent and open-source platform for the ever-growing research community working on MCEs and TMEs to collate and expedite our understanding of the occurrence, composition and functioning of these ecosystems. Database URL: http://mesophotic.org/ [ABSTRACT FROM AUTHOR]