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The knowledge of the relationship between the chemical structure of food components with their mechanisms of action is crucial for the understanding of diet health benefits. This review relates the chemical variability present in coffee beverages with the mechanisms involved in key physiological events, supporting coffee as a polyvalent functional food. Coffee intake has been related with several health-promoting properties such as neuroprotective (caffeine, chlorogenic acids and melanoidins), anti-inflammatory (caffeine, chlorogenic acids, melanoidins, diterpenes), microbiota modulation (polysaccharides, melanoidins, chlorogenic acids), immunostimulatory (polysaccharides), antidiabetic (trigonelline, chlorogenic acids), antihypertensive (chlorogenic acids) and hypocholesterolemic (polysaccharides, chlorogenic acids, lipids). Nevertheless, caffeine and diterpenes are coffee components with ambivalent effects on health. Additionally, a large range of potentially harmful compounds, including acrylamide, hydroxymethylfurfural, furan, and advanced glycation end products, are formed during the roasting of coffee and are present in the beverages. However, coffee beverages are part of the daily human dietary healthy habits, configuring a coffee paradox. HIGHLIGHTS: The multi-targeted bioactive features of coffee compounds reinforce coffee as a functional food beverage. Polysaccharides and melanoidins positively modulate gut microbiota. Caffeine and phenolics are neuroprotective, anti-inflammatory, antidiabetic and antihypertensive. The balance between potential health and harmful compounds configures a coffee paradox. Harmful compounds are present in trace levels in coffee, not conferring toxicity. [ABSTRACT FROM AUTHOR]

Caffeic acid is a common phenolic acid found in coffee and numerous fruits and vegetables. Known for its antioxidant properties, it is widely used as a dietary supplement as part of a polyphenol mixture or as an extract in the form of a capsule or powder. It is also available in liquid form as a homeopathic supplement. Caffeic acid phenethyl ester (CAPE) is an active component of propolis produced by honey bees. Propolis extract is used as a supplement and is available in various forms. The present paper is a comprehensive review of the biomedical literature, showing that caffeic acid effects are hormetic and occur in numerous biological models and cell types for a broad range of endpoints including many aging-related processes. Hormesis is a biphasic dose/concentration response displaying a low concentration/dose stimulation and a high concentration/dose inhibition. Complex alternative search strategies for caffeic acid were used since publications rarely used the terms hormesis or hormetic. Evaluation of the data provides the first assessment of caffeic acid-induced hormetic concentration/dose responses and their quantitative features. Their mechanistic foundations, extrapolative strengths/limitations, and their biomedical, clinical, and public health implications are discussed. Suggestions for future research are presented. [ABSTRACT FROM AUTHOR]

This study aimed primarily to evaluate acrylamide (AA) concentration using rapid, simplified, cost-effective liquid-liquid extraction and gas chromatography-mass spectrometry (GC-MS) in the most common instant coffee products, and secondly, to calculate the health risk assessment of AA for adults and children. The acrylamide level was quantified using gas chromatography coupled with the mass spectrometry (GC-MS). The estimated daily intake (EDI), hazard quotient (HQ), and margin of exposure(MOE) was also calculated. According to the results, acrylamide levels in instant coffee were obtained between 0.5 to 440.9 μg/kg. The concentrations of acrylamide detected in all samples were below the recommended benchmark levels by the European Commission (<850 µg/kg). The overall mean was calculated 137.3 ± 25.7 for coffee mix powder samples and 154.8 ± 39.7 for pure powder samples. There was no significant difference in AA concentration between pure powder and coffee mix groups (P > 0.05). However, a significant difference in AA content was observed in different brands of pure powder as well as some groups of the coffee mix (P < 0.05). Furthermore, the health risk due to consumption of various type of coffee is negligible. [ABSTRACT FROM AUTHOR]

[Display omitted] Coffee rings formed by evaporation of analyte-containing droplets are widely observed in micropatterning, bio-arrays, and trace detection. The coffee-ring effect caused by contact line pinning significantly affects the detection uniformity and sensitivity. Here, we propose a simple and operable method to effectively suppress coffee rings through controllable nanoparticles aggregation by superhydrophobicity-enabled dynamic evaporation. The gold nanoparticles (AuNPs) deposition footprint formed after dynamic evaporation on an integrated superhydrophobic surface was reduced by ∼3 orders of magnitude compared to that of non-interventional evaporation. Detailed experiments, numerical simulations, and theoretical studies have revealed that substrate wettability, temperature and droplet motion behaviors play significant roles in suppressing coffee-ring effect. More critically, based on the force mechanism of AuNPs at the interface/contact line, universal mathematical models and regime maps were established to classify the different deposition modes for AuNPs under different evaporation conditions by introducing dimensionless parameter G, revealing the enrichment mechanism of AuNPs in droplets under superhydrophobicity-enabled dynamic evaporation. The accuracy of the theoretical model and enrichment mechanism was demonstrated through the single-molecule detection of rhodamine 6G with excellent sensitivity (10–17 M, enhancement factor ∼1013) and perfect uniformity (relative standard deviation ∼5.57 %), which provides a valuable guide for research and applications of nanoparticle aggregation. [ABSTRACT FROM AUTHOR]

The coffee sector in Ethiopia is the livelihood of more than 20% of the population and accounts more than 25% of the country's foreign exchange earnings. Climate change is expected to affect the climatic suitability of coffee in Ethiopia, and this would have implications for global coffee output, the national economy, and farmers' livelihoods in Ethiopia. The objective of this paper is to assess the current and future impacts of climate change on bioclimatic suitability to C.arbica production in Ethiopia. Based on the current distribution of coffee production areas and climate change predictions from HadGEM2 and CCSM2 models and using the Maximum Entropy (MaxEnt) bioclimatic modeling approach, future changes in climatic suitability for C. arabica were predicted. Coffee production sites in Ethiopia were geo-referenced and used as input in the MAXENT model. The findings indicated that climate change will increase the suitable growing area for coffee by about 44.2% and 30.37% under HadGEM2 and CCSM2 models, respectively, by 2080 in Ethiopia. The study also revealed a westward and northwestward shift in the climatic suitability to C. arabica production in Ethiopia. This indicates that the suitability of some areas will continue with some adaptation practice, whilst others currently suitable will be unsuitable, yet others that are unsuitable will be suitable for arabica coffee production. These findings are intended to support stakeholders in the coffee sector in developing strategies for reducing the vulnerability of coffee production to climate change. Site-specific strategies should be developed to build a more climate resilient coffee livelihood in the changing climate. [ABSTRACT FROM AUTHOR]

Practical Application Caffeine extracted from callus cultures by in vitro technique induced from typica coffee (Coffea arabica L. var. typica) leaves was successfully carried out by a simple Soxhlet method. Analysis of X‐ray diffraction patterns showed an increase in crystallinity fraction from leaves (13.56%) to callus (14.46%) and then to caffeine (39.18%). Crystallite size also varied, with average sizes of 18 ± 6, 69 ± 51, and 32.5 ± 17 nm for leaves, callus, and caffeine, respectively. Fourier transmission infrared absorption data confirmed the presence of hydroxyl (OH) groups bound to carbon (C─COH), indicating caffeine content. The high stability of the C─COH is indicated by the broad optical phonon vibrations Δ(LO−TO)$\Delta ( {LO - TO} )$ of the leaves: 247 cm−1 to caffeine: 963 cm−1. Quantitative analysis of dielectric function and electron loss function intensity peaks of each sample showed that leaves efficiently capture and store light energy while caffeine has less potency. Scanning electron microscopy analysis showed irregular shapes of leaves, oval round shapes for callus, and rectangular crystals for caffeine due to crystal orientation during transformation and had a strong correlation with crystallinity fraction. Finally, the structure‐based identification, chemistry, optical‐dielectric function, and micro‐surface properties have been fully studied, thus unmasking the phenomenon of slow transformation from leaves to caffeine form.The result of this study can be applied to uncover new methodologies related to the classification, and biotechnological utilization of callus culture based on structural properties, optical‐dielectric function, and micro‐surface analysis. Methodologically, the resulting callus culture provides a sustainable and controllable supply of plant material for caffeine extraction, thereby reducing traditional methods involving field‐grown plants and avoiding the use of pesticides. [ABSTRACT FROM AUTHOR]

Silicon (Si) application may affect the plant response to nitrogen (N), possibly by changing the uptake, concentration, and partitioning of nutrients in plant tissues; however, this has not yet been proven in Arabica coffee plants. The effects of Si application methods [no Si, soil-applied soluble Si (168 mg Si L−1), and foliar-applied soluble Si (two application of 2 mg Si plant−1)] and N levels (0 and 80 mg N L−1) on biomass production and partitioning and uptake, partitioning, and stoichiometry of nutrients and Si in young Arabica coffee plants grown under greenhouse conditions were evaluated. Nitrogen fertilization increased the biomass production and uptake of all nutrients; however, reduced the concentrations of K, Ca, Mg, S, Mn, and Si in the leaves, Si in the stems, and K, Mg, and S in the roots of coffee plants as a dilution effect. In the presence of N, soil-applied Si increased the concentrations of Zn in the leaves and Ca and Si in the stems, the uptake of K, S, and Si, and the Si:N ratio. Foliar-applied Si increased the concentrations of N, P, K, and Zn in the leaves and Ca and Si in the stems, as well as the total uptake of K and Si and the Si:N ratio in coffee plants, being more evident in the N fertilization presence. This study unraveled that, especially when it was soil-applied, Si altered the nutrient uptake, allocation, and stoichiometric ratios with N, with a consequent increase in biomass production of young coffee plants fertilized with N. [ABSTRACT FROM AUTHOR]

Numerous challenges are associated with the classification of satellite images of coffee plantations. The spectral similarity with other types of land use, variations in altitude, topography, production system (shaded and sun), and the change in spectral signature throughout the phenological cycle are examples that affect the process. This research investigates the influence of biennial Arabica coffee productivity on the accuracy of Landsat-8 image classification. The Google Earth Engine (GEE) platform and the Random Forest algorithm were used to process the annual and biennial mosaics of the Média Mogiana Region, São Paulo (Brazil), from 2017 to 2023. The parameters evaluated were the general hits of the seven classes of land use and coffee errors of commission and omission. It was found that the seasonality of the plant and its development phases were fundamental in the quality of coffee classification. The use of biennial mosaics, with Landsat-8 images, Brightness, Greenness, Wetness, SRTM data (elevation, aspect, slope), and LST data (Land Surface Temperature) also contributed to improving the process, generating a classification accuracy of 88.8% and reducing coffee omission errors to 22%. [ABSTRACT FROM AUTHOR]

Accurate coffee plant counting is a crucial metric for yield estimation and a key component of precision agriculture. While multispectral UAV technology provides more accurate crop growth data, the varying spectral characteristics of coffee plants across different phenological stages complicate automatic plant counting. This study compared the performance of mainstream YOLO models for coffee detection and segmentation, identifying YOLOv9 as the best-performing model, with it achieving high precision in both detection (P = 89.3%, mAP50 = 94.6%) and segmentation performance (P = 88.9%, mAP50 = 94.8%). Furthermore, we studied various spectral combinations from UAV data and found that RGB was most effective during the flowering stage, while RGN (Red, Green, Near-infrared) was more suitable for non-flowering periods. Based on these findings, we proposed an innovative dual-channel non-maximum suppression method (dual-channel NMS), which merges YOLOv9 detection results from both RGB and RGN data, leveraging the strengths of each spectral combination to enhance detection accuracy and achieving a final counting accuracy of 98.4%. This study highlights the importance of integrating UAV multispectral technology with deep learning for coffee detection and offers new insights for the implementation of precision agriculture. [ABSTRACT FROM AUTHOR]

Background: The nexus plant-microbe-environment is essential to understand the ecosystem processes shaping plant health and fitness. Within this triangle, soils and associated microflora are among the key ecosystem's drivers, underpinning plant productivity and evolution. In this study, we conducted a comprehensive analysis (physicochemical properties, enzyme activities, and taxonomic diversity) of soils under the canopy projection of Coffea arabica trees along a gradient of elevation (600, 800, and 900 m) and shade (0, 50, 100%). Results: While shade had no influence on most parameters, altitude shaped the dynamics of microbial communities. Available phosphorus, soil organic carbon, and nitrate were significantly higher at 800 m, likely due to the higher activities of β-glucosidase and phosphatases at this altitude. Microbial biomass (carbon and nitrogen) and moisture were significantly higher at 600 and 900 m, which might be attributed to the abundance and richness of soil microorganisms. Indeed, metabarcoding analysis revealed a complex pattern of microbial consortia (bacteria, archaea, fungi) at the three altitudes, with the lowest index of richness recorded at 800 m. The highest number of Amplicon Sequence Variants was observed in bacteria, whose functional analysis revealed distinct metabolic adaptations across different altitudes. At 900 m, the main functional attributes favored the responses to environmental stimuli and microbial interactions; at 800 m, the predominant metabolic pathways were related to organic matter, fermentation, and bioremediation; and at the lower 600 m, the pathways shifted towards the breakdown of plant-derived compounds (e.g. geraniol, limonene, and pinene degradation). Conclusion: Overall, the results indicate a higher effectiveness of the microbial consortium at 800 m, which might result in better nutrient cycling. The study highlights the importance of canopy shade species and elevation for the composition of microbial consortia in C. arabica, unveiling ecological functions beyond plant health, with implications for bio-based solutions and biotechnology. [ABSTRACT FROM AUTHOR]

Background Results Conclusion The coffee crop is prominent in Brazilian agriculture, making the country a global power in this area. One of the main concerns in the coffee sector is disease, which can affect coffee productivity and quality. Thus, it is important to evaluate the factors that may affect coffee quality and thus enhance the development of strategies to reduce coffee losses and costs and optimize production. This study evaluated the influence of the type of irrigation (self‐propelled, drip, and center pivot) on the time until the occurrence of phoma leaf spot on Arabica coffee plants, considering the intensity of the disease. Additionally, the association between longitudinal incidence and the time until an event of interest was assessed based on the joint modeling of longitudinal and survival data.The results of this study identify the effectiveness of drip irrigation system compared with other systems; the use of such systems was associated with an ~46.5% reduction in the risk of leaf spot disease compared with the use of a self‐propelled irrigation system. The use of a center pivot system increased the risk of disease progression compared with a self‐propelled system. An association between the longitudinal and survival processes was also observed.The findings demonstrate the superior performance of the drip irrigation system in controlling phoma leaf spot disease in Arabica coffee plants compared with self‐propelled and center pivot systems. This research highlights the potential of using drip irrigation to establish more effective agricultural practices in coffee cultivation, contributing to better disease management and improved crop quality. © 2024 Society of Chemical Industry. [ABSTRACT FROM AUTHOR]

Societal Impact Statement Summary Despite strong historical declines, Guadeloupe and Haiti's coffee sectors remain important to rural communities' livelihood and resilience. Coffee also holds value as part of the islands' historical legacy and cultural identities. Furthermore, it is often grown in agroforestry systems providing important ecosystem services, which will become more important as these vulnerable islands work to adapt to a changing climate. Current efforts to revitalize coffee farms and target strategically important specialty markets would benefit from understanding existing genetic resources and the historical factors that shaped them. Our study reveals the rich history reflected in current coffee stands on the islands. The West Indies, particularly former French colonies like Haiti and Guadeloupe, were central to the spread of coffee in the Americas. The histories of these Islands are shared until the 19th century, where they diverged significantly. Still, both Islands experienced a strong decline in their coffee sector. Characterizing the genetic and varietal diversity of their coffee resources and understanding historical factors shaping them can help support revitalization efforts. To that end, we performed Kompetitve Allele‐Specific PCR (KASP) genotyping of 80 informative single nucleotide polymorphism (SNP) markers on field samples from across main coffee‐growing region of Guadeloupe, and two historically important ones in Haiti, as well as 146 reference accessions from international collections. We also compared bioclimatic variables from sampled geographic areas and searched for historical determinants of present coffee resources. At least five Coffea arabica varietal groups were found in Haiti, versus two in Guadeloupe, with admixed individuals in both. The traditional Typica variety is still present in both islands, growing across a variety of climatic environments. We also found Coffea canephora on both islands, with multiple likely origins, and identified C. liberica var. liberica in Guadeloupe. These differences are explained by the Islands' respective histories. Overall, Guadeloupe experienced fewer, but older introductions of non‐Typica coffee. By contrast, several recent introductions have taken place in Haiti, driven by local and global factors and reflecting the history of Arabica varietal development and spread. Diversity on these islands is dynamic, and our results reveal opportunities and limits to the future of Guadeloupean and Haitian coffee. [ABSTRACT FROM AUTHOR]

This study aims to investigate the influence of yeast fermentation and inoculation methods on the quality of coffee across 3 different coffee cultivars. Fermenting Sacchoromyces cerevisiae SafAle s-33 on Coffea arabica cv. Caltimor via bucket inoculation outperforms spray inoculation across all aspects including microbial cell adhesion, the chemical profile, reducing sugar content and sensory analysis conducted by a Q-grader. The PCA analysis revealed distinct profiles of organic acids and volatile compounds in roasted beans in yeast fermentation and natural fermentation of all 3 coffee varieties. Particularly, volatile compounds such 1-(4-Methoxyphenyl)octan-1-one, 8-Oxabicyclo[3.2.1]oct-6-en-3-one and 5,6-Dimethoxy-2-(2-hydroxyethyl-1-thio)-3 trimethylsilyl methyl-1,4-benzoquinone and, furfuryl ethyl ether and 5-methyl furfural were detected only in yeast fermented bean. The malic acid also contained a higher amount in roasted coffee beans from the yeast fermentation of all 3 coffee varieties than the natural fermentation. Those compounds present a notably positive influence on the sensory aspects of the coffee i.e. sweet caramel, dry fruit, vanilla and hazelnut-like flavors. In addition, roasted beans from the yeast fermentation of C. arabica cv. Caltimor and C. canephora cv. Robusta displayed higher sensory scores when compared to those from natural fermentation, conversely in C. arabica cv. Bourbon, beans from both yeast fermentation and natural fermentation displayed similar quality levels. Our study concluded that the commercial yeast strain within the beer and wine industry proved to be an alternative source for coffee fermentation. Nevertheless, the selection of the coffee variety plays a crucial role when utilizing S. cerevisiae SafAle s-33 as a starter. [ABSTRACT FROM AUTHOR]

During the COVID‐19, robots were increasingly utilized in the food service industry. This study compared perceptions of robot and human baristas by tracking participants' eye‐gaze behavior. Seventy participants viewed videos and images of both baristas, and their eye movements were tracked. Metrics such as entry time, dwell time, total fixation, hit ratio, revisits, revisitors, average fixation, first fixation, and fixation count in defined areas of interest (AOIs) were measured. Participants focused mostly on robot's body during coffee preparation and human barista's face. Attention stayed on the coffee with human baristas, while robot stimuli drew focus to the robot's hand and kettle. Participants fixated more on the robot itself, potentially due to its novelty in coffee preparation. This study can provide directions for the development of robots, including their appearance, so that they could be accepted familiarly by consumers and introduced seamlessly in the food industries. [ABSTRACT FROM AUTHOR]

Purpose: This study aims to find out how pomposia fruit powder (Syzygium cumini L.) mixed with roasted coffee (RCO) affected antioxidants, phytochemicals, lipid peroxidation inhibition and sensory attributes. Design/methodology/approach: Pomposia fruits (Syzygium cumini L.) powder (PFP) was integrated with RCO at levels of 0.0%, 5.0%, 10.0%, 15.0% and 20.0%. RCO, PFP and binary mixtures containing RCO: PFP were evaluated for their total phenolics (TP), total flavonoids (TF), anthocyanin content (AC), antioxidant activity and phenolic compounds fractionation. The oxidative indices of coffee oil samples were measured throughout different storage intervals. Additionally, sensory characteristics of RCO enriched with different PFP doses were evaluated. Findings: PFP samples exhibited the greatest TP content (1910 mg/100 g), whereas RCO samples had the lowest concentration (1090 mg/100 g). As more PFP was added, the corresponding coffee blends' concentrations of TP, TF and AC were improved significantly. PFP possesses a radical-scavenging activity that is about 1.20 times more than RCO's. DPPH (2,2-diphenyl-1-picrylhydrazyl) radical-scavenging activity jumped significantly from 74.13% in control (untreated) samples to 77.64%, 78.39% and 80.15% for samples enriched with 10.0%, 15.0% and 20% PFP, respectively. Significant increases in gallic acid, hesperidine, benzoic acid, chlorogenic acid, hispertin, catechol, quercetin, pyrogallol and rutin were detected when RCO was mixed with different quantities of PFP. At the end of storage trial, the coffee oil treated with 20% PFP had AV, PV and TBA values that were about 1.70, 1.95 and 1.66 times lower, respectively, than those of the control sample that had not had PFP addition. The RCO with 5.0% PFP achieved the greatest over acceptability grades. Originality/value: To the best of the authors' knowledge, this study was the first study to evaluate the effect of incorporating various level of pomposia fruit powder into RCO. The findings shows that adding different concentrations of pomposia fruit powder into RCO can indeed enhance the radical-scavenging activity of the coffee and potentially extend its shelf life. [ABSTRACT FROM AUTHOR]

Objective: The role of lifestyle habits in patients with laryngopharyngeal reflux disease (LPRD) is comparatively underexplored. We aim to examine the specific lifestyle habits in patients with LPRD. METHODS: Systematic sampling was applied to select respondents aged 18 through 80 years in otorhinolaryngology-head and neck surgery (OHNS) clinics in Nan Fang Hospital during August 2017–July 2018, 1658 eligible participants were included by a systematic sampling method. Subjects with RSI score>13 were considered as LPRD patients. The risk of reflux symptoms was estimated and multivariate calculated as odds ratios in relation to exposure to tobacco smoking, alcohol, coffee, tea, carbonated drinks, chocolate, spicy food, night sleep time, dinner-to-bed time, subjective sleep quality, and physical exercise. Results: There was a significant dose-response association between carbonated beverage and LPRD. Among people who had drinking carbonated drinks the odds ratio was 1.76 (OR 1.77, 95% CI 1.24–2.50, P =.002) compared with non-carbonated drinker. A similar positive association was found for poor subjective sleep quality and shorter night sleeping time, the odds ratio for reflux was 1.58 (95% CI 1.14 to 2.18) among those who always have poor subjective sleep quality compared with those whose have good subjective sleep quality. The odds ratio for reflux was 2.29 (95% CI 1.23–4.28, P =.015) among those who always sleep 3–5 hours every night compared with those who sleep more than 8 hours every night. Beyond that, we found high BMI may have a negative correlation with LPRD, the odds ratio for reflux was.61 (95% CI 0.39 to.95, P =.054) among those whose BMI >25 kg/m2 compared with those BMI ≤ 20 kg/m2. Conclusions: Patients with LPRD may have certain lifestyle habits, avoid carbonated beverage, poor subjective sleep quality, and lack of sleep should be advised in treatment of LPRD. [ABSTRACT FROM AUTHOR]

Coffee roasting is considered the most critical process in the development of sensory characteristics. During this stage, a substantial number of compounds are generated. Nevertheless, only a limited number of these compounds are responsible for the aroma, referred to as key aroma-active compounds. This study aimed to assess the impact of roasting levels on the formation of these compounds. Coffee was roasted at four different levels: very light (RL85), light (RL75), medium (RL55), and extremely dark (RL25), according to the Specialty Coffee Association (SCA) guidelines. The extraction, olfactory evaluation, and identification of compounds were performed using solid-phase microextraction (SPME), gas chromatography–olfactometry (GC-O), and gas chromatography–mass spectrometry (GC-MS), respectively. A total of 74 compounds were successfully identified, of which 25 were classified as aroma-active compounds. RL75 and RL85 displayed similar aromatic profiles. RL55 was characterized by pleasant notes such as sweet, toasted hazelnut, and caramel. In contrast, RL25 was marked by undesirable odors including burnt notes, putrid, and sulfurous scents. This study is the first to identify key odorant compounds in coffee based on SCA roasting standards. [ABSTRACT FROM AUTHOR]

The color of coffee fruits is influenced by several factors, including cultivar, ripening stage, and metabolite composition. However, the metabolic accumulation of pigments and the molecular mechanisms underlying peel coloration during the ripening process of Coffea arabica L. remain relatively understudied. In this study, UPLC-MS/MS-based metabolomics and RNA sequencing (RNA-seq)-based transcriptomics were integrated to investigate the accumulation of anthocyanins and carotenoids in the peel of Coffea arabica at different ripening stages: green peel (GP), green-yellow peel (GYRP), red peel (RP), and red-purple peel (RPP). This integration aimed at elucidating the molecular mechanisms associated with these changes. A total of ten anthocyanins, six carotenoids, and thirty-five xanthophylls were identified throughout the ripening process. The results demonstrated a gradual decrease in the total carotenoid content in the peel with fruit maturation, while anthocyanin content increased significantly. Notably, the accumulation of specific anthocyanins was closely associated with the transition of peel colors from green to red. Integrated metabolomics and transcriptomics analyses identified the GYRP stage as critical for this color transition. A weighted gene co-expression network analysis (WGCNA) revealed that enzyme-coding genes such as 3AT, BZ1, and lcyE, along with transcription factors including MYB, NAC, and bHLH, which interact with PHD and SET TR, may regulate the biosynthesis of anthocyanins and carotenoids, thereby influencing peel pigmentation. These findings provide valuable insights into the molecular mechanisms underlying the accumulation of anthocyanins and carotenoids in Coffea arabica peel during fruit maturation. [ABSTRACT FROM AUTHOR]

Assess the changes in post‐traumatic stress disorder (PTSD), burnout, anxiety, depression, jobstrain, and isostrain levels over time among healthcare workers in emergency departments (EDs) after successive outbreaks of COVID‐19. A prospective, multicenter study was conducted in 3 EDs and an emergency medical service. Healthcare workers who participated in our previous study were invited to participate in a follow‐up 16 and 18 months and completed the questionnaires to assess symptoms of PTSD, burnout, anxiety, depression, jobstrain, and isostrain. Among the 485 healthcare workers asked to participate, 211 (43.5%) completed the survey at inclusion (122 were followed up at 3 months) and 59 participate to the follow‐up study. At 16 months, 10.9% of healthcare workers had symptoms of PTSD and 17.4% at 18 months. At inclusion, 33.5% and 11.7% of healthcare workers had symptoms of anxiety and depression, respectively. A decrease in anxiety between inclusion and 16 months (p = 0.02) and an increase between 16 and 18 months (p = 0.009) was observed. At inclusion, 40.8% of all healthcare workers had symptoms of burnout. There was an increase in symptoms of burnout between inclusion and 18 months (p = 0.006). At inclusion, 43.2% and 29.5% of healthcare workers were exposed to jobstrain and isostrain, respectively. Jobstrain were higher among paramedics and administrative staff compared to physicians (p = 0.001 and p = 0.026, respectively). Successive outbreaks of COVID‐19 led to long‐term mental health consequences among ED healthcare workers that differed according to occupation. This must be taken into account to rethink the management of teams. [ABSTRACT FROM AUTHOR]

Background: Remote sensing based on multispectral imaging may be useful for detecting vegetation stress responses in agriculture. Objectives: To evaluate the potential of orbital multispectral imaging in discriminating the most effective strategies for reducing plant-parasitic nematode populations, thereby preventing yield losses in coffee production. Methods: Coffee plants were treated with eleven treatments, including Bacillus spp. isolates, commercial biological products, commercial chemical nematicides, and water (control group). Initial and final nematode populations in the soil were quantified, and surface reflectance data were collected using the Planet orbital multispectral sensor. The data were classified using the random tree algorithm. Results: The population of plant-parasitic nematodes was reduced by 35.90% and 55.13% following the application of B. amyloliquefaciens isolate B266 and B. subtilis isolate B33, respectively. Under the conditions of this experiment, multispectral imaging accurately discriminated the most nematicidal treatments, with a global accuracy of 80%. Conclusions: Orbital multispectral imaging can discriminate the most effective treatments used for nematode management in coffee plants, highlighting its potential as a supportive tool in agriculture. [ABSTRACT FROM AUTHOR]

Background/Objectives: Studies examining the association between coffee consumption and metabolic syndrome (MetS), considering different coffee types, have reported inconsistent results. We investigated the relationship between coffee consumption and MetS, taking into account coffee types, using data from the Korea National Health and Nutrition Examination Survey conducted from 2016 to 2021 among 14,631 adults aged 19–64 years. Subjects/Methods: We used a 24-h dietary recall method to assess diet, including the type and quantity of coffee consumed. Coffee was categorized into black coffee and coffee with sugar and/or cream (non-drinkers, ≤1, 2–3, and >3 cups/day). Multivariable logistic regression models were utilized to investigate the relationship between coffee consumption and MetS, defined by the harmonized criteria. Results: After adjusting for potential covariates, for women, 2–3 cups/day of black coffee were inversely associated with MetS (OR = 0.66; 95% CI = 0.46–0.96). Three or fewer cups per day of black coffee were inversely associated with low high-density lipoprotein cholesterol (HDL-C) and elevated triglycerides in women. Coffee consumption was not significantly associated with MetS in men. Consumption of coffee with sugar and/or cream or more than three cups per day of coffee was not significantly associated with MetS overall. Conclusion: Our findings suggest that moderate of 2–3 cups/day of black coffee consumption is inversely associated with MetS in women, possibly due to its favorable impact on HDL-C and triglycerides. Further prospective studies examining the consumption of different coffee types in relation to MetS are warranted to offer definitive evidence. [ABSTRACT FROM AUTHOR]

Plant U-box genes play an important role in the regulation of plant hormone signal transduction, stress tolerance, and pathogen resistance; however, their functions in coffee (Coffea canephora L.) remain largely unexplored. In this study, we identified 47 CcPUB genes in the C. canephora L. genome, clustering them into nine groups via phylogenetic tree. The CcPUB genes were unevenly distributed across the 11 chromosomes of C. canephora L., with the majority (11) on chromosome 2 and none on chromosome 8. The cis-acting elements analysis showed that CcPUB genes were involved in abiotic and biotic stresses, phytohormone responsive, and plant growth and development. RNA-seq data revealed diverse expression patterns of CcPUB genes across leaves, stems, and fruits tissues. qRT-PCR analyses under dehydration, low temperature, SA, and Colletotrichum stresses showed significant up-regulation of CcPUB2, CcPUB24, CcPUB34, and CcPUB40 in leaves. Furthermore, subcellular localization showed CcPUB2 and CcPUB34 were located in the plasma membrane and nucleus, and CcPUB24 and CcPUB40 were located in the nucleus. This study provides valuable insights into the roles of PUB genes in stress responses and phytohormone signaling in C. canephora L., and provided basis for functional characterization of PUB genes in C. canephora L. [ABSTRACT FROM AUTHOR]

Background: Erectile dysfunction (ED) is a common condition with various contributing factors, including lifestyle and dietary habits. Caffeine, a widely consumed stimulant, has been linked to multiple physiological effects on vascular function and hormonal balance that might influence sexual function. This meta-analysis aims to evaluate the association between caffeine intake and the risk of ED by analyzing data from cohort studies. Methods: A systematic search was conducted across PubMed, Web of Science, Scopus, and Embase databases, and a manual search was conducted on Google Scholar for studies on the relationship between caffeine intake and ED in adult men. The search included observational studies published up to April 1, 2024. Four cohort studies were included, and their data were extracted and analyzed by STATA version 18. Results: Four included cohort studies comprised 51,665 cohort members. The study population included adult males, on average, aged 18 to 80. The results indicate that there was no significant relationship between coffee consumption and the risk of ED (relative risk [RR] = 0.94, 95% CI: 0.86–1.03; p = 0.999). Conclusions: The current evidence suggests no significant relationship between caffeine intake and ED, but limited studies limit conclusions. Future research should focus on larger sample sizes, standardized outcome assessments, and different dosages and forms of caffeine consumption. [ABSTRACT FROM AUTHOR]

Background: Breast cancer is the most diagnosed cancer in women. Its pathogenesis includes several pathways in cancer proliferation, apoptosis, and metastasis. Some clinical data have indicated the association between coffee consumption and decreased cancer risk. However, little data is available on the effect of coffee on breast cancer cells in vitro and in vivo. Methods: In our study, we assessed the effect of Turkish coffee and Fridamycin-H on different pathways in breast cancer, including apoptosis, proliferation, and oxidative stress. A human breast cancer cell line (MCF-7) was treated for 48 h with either coffee extract (5% or 10 v/v) or Fridamycin-H (10 ng/ml). Ehrlich solid tumors were induced in mice for in vivo modeling of breast cancer. Mice with Ehrlich solid tumors were treated orally with coffee extract in drinking water at a final concentration (v/v) of either 3%, 5%, or 10% daily for 21 days. Protein expression levels of Caspase-8 were determined in both in vitro and in vivo models using ELISA assay. Moreover, P-glycoprotein and peroxisome proliferator-activated receptor gamma (PPAR-γ) protein expression levels were analyzed in the in vitro model. β-catenin protein expression was analyzed in tumor sections using immunohistochemical analysis. In addition, malondialdehyde (MDA) serum levels were analyzed using colorimetry. Results: Both coffee extract and Fridamycin-H significantly increased Caspase-8, P-glycoprotein, and PPAR-γ protein levels in MCF-7 cells. Consistently, all doses of in vivo coffee treatment induced a significant increase in Caspase-8 and necrotic zones and a significant decrease in β- catenin, MDA, tumor volume, tumor weight, and viable tumor cell density. Conclusion: These findings suggest that coffee extract and Fridamycin-H warrant further exploration as potential therapies for breast cancer. [ABSTRACT FROM AUTHOR]

Background: Nonrestorative sleep (NRS) is related to numerous adverse outcomes. There is rare evidence of its associated factors, especially in Chinese adolescents. This study aimed to explore the factors associated with NRS in Chinese adolescents and the potential moderation effects of coffee or tea consumption. Methods: This cross-sectional study invited adolescents attending Grades 7–11 in Nanjing, China, to complete a self-administered questionnaire, including their NRS, stress, anxiety, physical symptoms, depression, sociodemographics, and lifestyles. Linear regressions were applied to investigate the associated factors of their NRS, with the moderation effects of coffee or tea consumption and other characteristics being tested by additionally including their interactions. Results: Totally 481 adolescents (49% male, age 15.5 ± 1.5 years) were enrolled, with the average global NRS score of 42.16 ± 7.57. Higher family income (β = 2.01, P = 0.007), longer sleep duration (β = 2.33, P = 0.011), and moderate after-class activity (β = 1.50, P = 0.044) contributed less NRS, while higher educational level (β = −2.60, P = 0.033), more coffee or tea consumption (β = −1.68, P = 0.013), physical symptoms (β = −3.85, P < 0.001), stress (β = −0.23, P = 0.005), anxiety (β = −1.54, P = 0.045), and depression (β = −0.13, P = 0.014) contributed more NRS. Females (β = 0.82, P = 0.005), older age (β = −0.46, P = 0.029), and higher education level (β = −1.68, P < 0.001) contributed less refreshment from sleep, more physical/medical symptoms of NRS, and less daytime function, respectively. Coffee or tea consumption moderated the associations of somatic symptoms (β = 0.25, P = 0.021), stress (β = 0.29, P = 0.022), anxiety (β = 0.27, P = 0.005), and depression (β = 0.17, P = 0.021) with NRS. Conclusions: Longer sleep duration, moderate after-class activity, reduced coffee or tea consumption, and promotion of physical and mental health may help reduce adolescents' NRS. Coffee or tea consumption may help buffer the negative associations of somatic symptoms, stress, anxiety, and depression with NRS. [ABSTRACT FROM AUTHOR]

Introduction. Etymologically the word ileus comes from the Greek eileos, which means rolling or turning. It is described as the temporary delay of gastrointestinal motility. It is recognized worldwide that postoperative ileus is one of the main complications after surgery and represents an important problem due to its high healthcare cost. Research has been done regarding the preventive use of physical and pharmacological measures, such as prokinetics, for the management of postoperative ileus. Methods. Clinical-therapeutic, comparative, prospective longitudinal follow-up research, with non-probabilistic convenience sampling, made up of four groups with 25 patients each, treated in the General Surgery Service between May and August 2021. Results. The patients had a mean age of 49.4 ± 19.6 years and 53% were male; 86% of patients had bowel sounds within 24 hours after the operation. The first bowel movement in patients who ingested espresso coffee was 42.6 hours and for those in the American coffee group it was at 43.4 hours compared to 89.4 hours in the control group (p < 0.001). Conclusion. The use of coffee is recommended as a safe and economical measure to start the diet as an alternative to the traditional fashion, becoming an option for the management of postoperative ileus. [ABSTRACT FROM AUTHOR]

Bondowoso Robusta Coffee is a type of Robusta coffee that has a distinctive taste and high quality. The distinctive taste and high quality are obtained from the results of harvest management and post-harvest processing in accordance with Standard Operating Procedures (SOP). This research will be carried out by testing the characteristics of Robusta ground coffee with a mixture of palm sugar and vanilla flavoring to improve the quality of Robusta ground coffee. This was done by knowing the physicochemical and organoleptic properties of the mixed Robusta ground coffee. The aim of this research is to determine the interaction between roasting level and the composition of palm sugar and vanilla powder on the physiochemical and organoleptic properties of 3 in 1 Robusta Coffee. This research uses an experimental plan arranged factorially with the basic pattern of a Completely Randomized Design (CRD) with 4 replications. This design has two factors, the first factor is the roasting level and the second is the mixture composition. The results of this research show (1) The interaction of Roasting Level and Mixture (palm sugar and vanilla powder) has no significant effect on all observed variables such as water content, Brix content, pH value, and powder bulk density. (2) The effect of the main level of roasting has a very significant effect on the observed variables of rainfall density and an insignificant effect on the variables of air content, Brix content and pH value. (3) The effect of the main mixture has a very significant effect on the observed variables of air content, Brix content and powder bulk density and has no significant effect on the variable pH value. [ABSTRACT FROM AUTHOR]

A fast, simple and cost-effective capillary electrophoresis (CE) method was developed for caffeine determination in different beverages (energy drinks, soft drinks). Because caffeine is neutral from electrophoretic point of view and migrates with the electroosmotic flow (EOF), micellar electrokinetic chromatography (MEKC) was chosen as the separation method. The optimum separation conditions consisted of 25 mM sodium tetraborate, 100 mM sodium dodecyl sulphate, pH 9.30, 20°C temperature, 20 kV voltage, 50 mbar/sec hydrodynamic injection, UV detection at 270 nm. Employing the optimized conditions caffeine was quantified in less than 3 minutes. The analytical performances of the method were verified in terms of accuracy, linearity, limit of detection and quantification, precision and robustness. The method was applied also to detect caffeine in coffee and tea. The advantage of MEKC over other analytical methods, particularly compared with the more frequently used HPLC methods, lies in its lower operating costs and higher environmental friendliness. [ABSTRACT FROM AUTHOR]

Understanding the dynamics of physiological changes involved in the acclimation responses of plants after their exposure to repeated cycles of water stress is crucial to selecting resilient genotypes for regions with recurrent drought episodes. Under such background, we tried to respond to questions as: (1) Are there differences in the stomatal-related and non-stomatal responses during water stress cycles in different clones of Coffea canephora Pierre ex A. Froehner? (2) Do these C. canephora clones show a different response in each of the two sequential water stress events? (3) Is one previous drought stress event sufficient to induce a kind of "memory" in C. canephora? Seven-month-old plants of two clones ('3V' and 'A1', previously characterized as deeper and lesser deep root growth, respectively) were maintained well-watered (WW) or fully withholding the irrigation, inducing soil water stress (WS) until the soil matric water potential (Ψmsoil) reached ≅ −0.5 MPa (−500 kPa) at a soil depth of 500 mm. Two sequential drought events (drought-1 and drought-2) attained this Ψmsoil after 19 days and were followed by soil rewatering until a complete recovery of leaf net CO2 assimilation rate (Anet) during the recovery-1 and recovery-2 events. The leaf gas exchange, chlorophyll a fluorescence, and leaf reflectance parameters were measured in six-day frequency, while the leaf anatomy was examined only at the end of the second drought cycle. In both drought events, the WS plants showed reduction in stomatal conductance and leaf transpiration. The reduction in internal CO2 diffusion was observed in the second drought cycle, expressed by increased thickness of spongy parenchyma in both clones. Those stomatal and anatomical traits impacted decreasing the Anet in both drought events. The '3V' was less influenced by water stress than the 'A1' genotype in Anet, effective quantum yield in PSII photochemistry, photochemical quenching, linear electron transport rate, and photochemical reflectance index during the drought-1, but during the drought-2 event such an advantage disappeared. Such physiological genotype differences were supported by the medium xylem vessel area diminished only in '3V' under WS. In both drought cycles, the recovery of all observed stomatal and non-stomatal responses was usually complete after 12 days of rewatering. The absence of photochemical impacts, namely in the maximum quantum yield of primary photochemical reactions, photosynthetic performance index, and density of reaction centers capable of QA reduction during the drought-2 event, might result from an acclimation response of the clones to WS. In the second drought cycle, the plants showed some improved responses to stress, suggesting "memory" effects as drought acclimation at a recurrent drought. [ABSTRACT FROM AUTHOR]

Remotely piloted aircraft (RPAs) have been increasingly used for crop protection in coffee plantations. However, the applications can result in low spray deposition on leaves and higher product losses between rows compared to ground airblast sprayers. This study aimed to evaluate the spray deposition on the coffee canopy and potential losses to the soil during application with an RPA and an airblast sprayer at varying spray volumes. The experiment comprised four spray treatments: RPA at 10 L ha−1 and 20 L ha−1, and airblast sprayer at 200 L ha−1 and 300 L ha−1. Leaf deposition was quantified by measuring a tracer on leaves from the lower and upper parts of the coffee canopy using spectrophotometry. Spray losses to the soil were measured by analyzing tracer residues on Petri dishes positioned within the inter-rows and beneath the coffee canopy. Statistical process control was used to analyze spray deposition quality in the study area. Ground-based airblast spraying resulted in the highest overall canopy deposition, while RPA spraying led to greater losses within the inter-rows. No significant difference was observed in spray runoff beneath the canopy between ground-based and aerial applications. Leaf deposition exhibited random variability across all application methods. Therefore, application stability, control, and spray quality standards were maintained. [ABSTRACT FROM AUTHOR]

BACKGROUND: Esthetic orthodontic wires are preferred for their ease to fit in with natural tooth color, but their susceptibility to staining in the oral environment poses a concern. Various Coatings such as Teflon and Epoxy aim to enhance appearance and biocompatibility but may still result in discoloration. Understanding the color stability of these wires under different staining conditions is crucial for a better and enhanced treatment plan. OBJECTIVE: This study intended to assess the color stability of esthetic orthodontic wires under various staining solutions that are often used in daily life. METHOD: Color changes of Teflon and Epoxy-coated esthetic orthodontic wires were meticulously measured at baseline, 7, 14, and 21-day intervals utilizing the precise CIE Lab* color measurement system. A total of thirty-two samples of wires from each brand were prepared (n = 8/group) and immersed in staining solutions (coffee, tea, cola, and saffron). The color change within and between the groups was statistically evaluated (p < 0.05). RESULTS: Significant variations in color stability were observed across different staining solutions. Saffron emerged as the most potent agent, inducing the most pronounced color changes, whereas cola demonstrated the least impact. Furthermore, Epoxy-coated wires consistently exhibited superior color stability compared to their Teflon-coated counterparts across all staining solutions and time intervals. CONCLUSION: This study underlines the significance for orthodontists to consider staining agents' possible effects on orthodontic wires into account when selecting the orthodontic wires. The findings suggest that Epoxy-coated wires hold promise in mitigating discoloration issues during orthodontic therapy. [ABSTRACT FROM AUTHOR]

Objective: The purpose of this study is to investigate the prevalence of restless legs syndrome (RLS) in pregnancy and its relationship with vitamin and mineral use. Materials and Methods: The study used a cross-sectional design. The target population of the study was 612 pregnant women. Data were collected between September and December 2020 using the "pregnant woman information form", the "RLS diagnostic criteria questionnaire" and the "RLS severity assessment scale". Results: Around one in eight participating pregnant women were found to have RLS symptoms. We found that more than half of the pregnant women with RLS experience severe symptoms of RLS. Pregnant women's RLS symptoms were found to as the income level decreased, gestational week increased, coffee consumption increased, weight gained during pregnancy increased, and the number of weekly exercises decreased; RLS symptoms were less common in pregnant women who used magnesium, multivitamin, folic acid and vitamin D (p<0.05). Conclusion: This study showed that RLS is an important health problem in pregnancy and the use of magnesium, multivitamins, folic acid, and Vitamin D reduces the prevalence of RLS. [ABSTRACT FROM AUTHOR]

Nowadays, coffee consumption is quite high, and the consumption of filter coffee is steadily increasing. Consequently, there is a significant increase in waste filter coffee. This study aims to evaluate waste filter coffee grounds using a zero-waste approach. In this context, the solid product of pyrolyzed waste filter coffee grounds was added to the soil in specific ratios to improve soil quality and increase yield. The effects on the root and stem development of arugula (Eruca vesicaria) and garden cress (Lepidium sativum) plants were investigated. Waste filter coffee grounds was homogeneously mixed with soil at application rates of 1, 2, and 4 tons/ha. The results of the study observed that the pyrolysis solid product positively affected plant growth. Comparing the data, the highest yield in plants was observed in soil with added biochar, while lower yields were seen in soil with added raw waste filter coffee grounds, and the lowest yield was found in soil without biochar. Among the soils with added biochar, the most significant root and stem development was observed in plants with 2 tons/ha of added biochar. [ABSTRACT FROM AUTHOR]

Developing a new coffee cultivar can take up to 25 years using traditional approaches. The implementation of molecular tools into the coffee breeding pipeline can speed up the development of high‐yielding varieties with multiple resistance to pests and diseases. This study aimed to verify the presence of gene pyramiding for resistance to coffee berry disease (CBD) and coffee leaf rust and access the breeding potential of a breeding population of coffee (Coffea arabica L.) that presents partial phenotypic resistance to coffee leaf miner. A progeny of 128 individuals was evaluated in 2019 during the coffee maturation stage for 11 agronomic traits. The individuals were genotyped for four loci related to rust and CBD resistance. Gene pyramiding was verified based on the presence of markers linked with the resistance alleles. Genetic parameters were estimated, and a selection index was used to rank the individuals based on the phenotypic evaluation. Gene pyramiding for rust and CBD was detected in ∼82% of the individuals. Moreover, the phenotypic evaluation of rust indicated high levels of resistance, confirmed by the presence of the resistance alleles. Ninety‐five percent of the 38 top‐ranked individuals presented resistance alleles and could be used in an interpopulation recurrent selection scheme with marker‐assisted selection. The studied coffee population has the potential to be used in coffee breeding programs since it presents vigorous individuals with low levels of coffee leaf miner incidence (CLMI) and gene pyramiding for CBD and rust resistance, the main pest and diseases of this crop. Core Ideas: The Ck‐1 gene that confers resistance to coffee berry disease is present in 68% of the individuals of the F2 population.Most of the F2 individuals have rust‐resistance genes.The 38 top‐ranked individuals presented multiple resistance loci. [ABSTRACT FROM AUTHOR]

Coffee is an important crop with economic and social importance in several countries. With a daily consumption estimated at 2.2 billion cups, its sustainability is facing critical challenges given the projected climate changes. Coffea arabica, which represents ∼60% of the global market coffee is a delicate crop, quite susceptible to diseases and biotic stresses. Developing climate‐resilience cultivars is necessary, and it includes coffee plants adapted to new farming conditions that can meet the demand for biotic and abiotic tolerance and quality. In this context, Coffea canephora emerges as a potential candidate if the crop combines plasticity and cupping quality. Plant plasticity refers to adjusted phenotypic performance when grown in different environments, a fact that may help mitigate the detrimental effect of climate changes. In this study, using a multiple environment trial, we combined genomic and genotype‐by‐environment analyses to answer the following main question: How the climate effects may affect the phenotypic plasticity in C. canephora? Our contributions in this paper are fourfold: (i) we draw attention to the cupping quality and yield performance of C. canephora cultivars when evaluated in high‐altitude and cold weather, (ii) we compared C. arabica and C. canephora phenotypic plasticity and highlight genotypes with broad and specific adaptation to certain environmental conditions, and finally, (iii) using stochastic simulation, we emphasize the potential of molecular breeding in the long term in coffee. Altogether, we present an emerging view on how C. canephora could be a valid alternative for climate‐smart cultivars in a projected scenario of altered climatic conditions. Core Ideas: Coffee sustainability is facing critical challenges given the projected climate changes.Inference on plant plasticity can identify plants more subjected to genotype‐by‐environment interaction, and therefore mitigate the detrimental effect of rapidly changing climate.Analyses of Coffea canephora phenotypic plasticity highlighted genotypes with broad and specific adaptation to certain environmental conditions.Results shed new light on the use of C. canephora as an alternative for climate‐smart coffee cultivars. [ABSTRACT FROM AUTHOR]

Drawing inspiration from the recent trend of Sauce-Flavored Latte, this paper ingeniously explores the dual narrative of "wine meets coffee", unraveling the anthropomorphic tale of ethanol and caffeine. Delving into their chemical properties, physiological mechanisms, and metabolic pathways, the narrative aims to enlighten readers about the underlying chemistry and health implications, enabling a more informed and moderate consumption of beverages. [ABSTRACT FROM AUTHOR]

Coffee is one of the three most consumed beverages in the world. It is made by first roasting coffee beans, and then grinding and boiling or steeping the roasted beans in water (brewing). The process of roasting and brewing produces a complex mix of bioactive compounds, including methylxanthines (caffeine, theobromine, theophylline), diterpenes, chlorogenic acid, trigonelline, flavonoids, and hydroxycinnamic acid. In the body, these compounds may be metabolized to produce other bioactive compounds. For example, caffeine is primarily (80%) broken down by demethylation to produce paraxanthine. In the post-ingestion period, levels of paraxanthine may be higher than caffeine due to its slower elimination. Hence, while paraxanthine is not found in coffee itself, it has many of the same properties as caffeine and may be a major contributor to its metabolic effects. The impacts of caffeine and paraxanthine on metabolism relate to their impact on adenosine receptors (notably the A2A receptor). It has been known for almost 100 years that intake of coffee stimulates metabolism by between 5% and 20% for at least 3 h. About half of the increase in metabolic rate after drinking coffee is due to caffeine and derivatives, but the source of the other half is unclear. There are large differences in the response to the same amount of coffee in different individuals, which may be related to caffeine clearance rates, effects of other unknown pathways, genetic polymorphism, age, sex, and body composition. [ABSTRACT FROM AUTHOR]

The increasing complexity of deep learning models can make it difficult to interpret and fit models beyond a purely accuracy-focused evaluation. This is where interpretable and eXplainable Artificial Intelligence (XAI) come into play to facilitate an understanding of the inner workings of models. Consequently, alternatives have emerged, such as class activation mapping (CAM) techniques aimed at identifying regions of importance for an image classification model. However, the behavior of such models can be highly dependent on the type of architecture and the different variants of convolutional neural networks. Accordingly, this paper evaluates three Convolutional Neural Network (CNN) architectures (VGG16, ResNet50, ConvNext-T) against seven CAM models (GradCAM, XGradCAM, HiResCAM, LayerCAM, GradCAM++, GradCAMElementWise, and EigenCAM), indicating that the CAM maps obtained with ConvNext models show less variability among them, i.e., they are less dependent on the selected CAM approach. This study was performed on an image dataset for the classification of coffee leaf rust and evaluated using the RemOve And Debias (ROAD) metric. [ABSTRACT FROM AUTHOR]

This study investigated the composition of the aroma substances and the physicochemical properties of lyophilized coffee produced from Ecuador Arabica and robusta coffee beans. In the present study, we propose a fast method of analyzing volatile compounds in coffee using the headspace solid phase extraction method (HS-SPME) combined with gas chromatography-mass spectrometry (GC-MS). According to the results, 25 aroma compounds were detected in coffee, the most important of which are 2-acetylfuran, 2-furanmethanol, 2,3-dimethylpyrazine, 2,3,5-trimethylpyrazine, and 2-methoxy-4-vinylphenol. As is known, furans and pyrazines are associated with "roasted, cocoa, coffee, and hazelnut" odours. The most important organic acids detected in the study are citric, maleic, and succinic. [ABSTRACT FROM AUTHOR]

Functional gastrointestinal disorders (FGIDs) are common in young adults, particularly women, who tend to develop multiple FGIDs over time. This study aimed to investigate the prevalence of multiple concurrent FGIDs among female university students and identify differences in dietary habits, academic stress, and quality of life (QOL) based on the number of concurrent FGIDs. This secondary analysis included data from 406 female participants, originally collected through an online survey from two universities in one city in Korea. The online survey was accessible only after participants were verified as students through their online community. Concurrent FGID was present in 25.8 percent (n = 16) of the participants with FGIDs (n = 62), with the most common being irritable bowel syndrome + functional dyspepsia overlap (43.8 percent, 7/16). Participants with multiple concurrent FGIDs consumed fewer grains and vegetables, while significantly more of them consumed instant food, fast food, milk, and tea/coffee. They experienced significantly higher academic stress and lower QOL than those without the disease. Female university students with concurrent FGIDs tend to have unhealthy dietary habits, and concurrent FGIDs negatively affect academic stress and QOL. Therefore, female university students should undergo early-stage screening for FGIDs, and a comprehensive program should address their dietary habits and stress-coping skills. [ABSTRACT FROM AUTHOR]

The aim of this literature review was to identify and provide a summary update on the validity and applicability of the most promising dietary biomarkers reflecting the intake of important foods in the Western diet for application in epidemiological studies. Many dietary biomarker candidates, reflecting intake of common foods and their specific constituents, have been discovered from intervention and observational studies in humans, but few have been validated. The literature search was targeted for biomarker candidates previously reported to reflect intakes of specific food groups or components that are of major importance in health and disease. Their validity was evaluated according to 8 predefined validation criteria and adapted to epidemiological studies; we summarized the findings and listed the most promising food intake biomarkers based on the evaluation. Biomarker candidates for alcohol, cereals, coffee, dairy, fats and oils, fruits, legumes, meat, seafood, sugar, tea, and vegetables were identified. Top candidates for all categories are specific to certain foods, have defined parent compounds, and their concentrations are unaffected by nonfood determinants. The correlations of candidate dietary biomarkers with habitual food intake were moderate to strong and their reproducibility over time ranged from low to high. For many biomarker candidates, critical information regarding dose response, correlation with habitual food intake, and reproducibility over time is yet unknown. The nutritional epidemiology field will benefit from the development of novel methods to combine single biomarkers to generate biomarker panels in combination with self-reported data. The most promising dietary biomarker candidates that reflect commonly consumed foods and food components for application in epidemiological studies were identified, and research required for their full validation was summarized. [ABSTRACT FROM AUTHOR]

A simple method set for assessing biochemical changes associated with osmotic stress responses was developed using coffee (Coffea arabica L.) leaf disks. Stress was induced by polyethylene glycol (PEG) exposure. Quantitative evaluation of tissue physiological stress parameters was carried out using analytical methods to validate the conversion of classic qualitative histochemical tests for localizing lipid peroxidation, hydrogen peroxide, and total xanthine alkaloids into semi-quantitative assays. Relative electrolyte leakage (EL%) and chlorophyll content (SPAD index) were also recorded. EL% levels of treated disks were higher than those of control ones, whereas SPAD indexes were comparable. Histochemical localization indicated that levels of lipid peroxidation, H2O2, and total xanthines were also higher under osmotic stress than in control conditions. Semi-quantitative data obtained by image processing of histochemical staining consistently matched quantitative evaluations. Chromatographic analyses revealed that theophylline and caffeine concentrations increased in the presence of PEG, whereas theobromine remained constant in relation to the control. The methods herein described can be useful to rapidly acquire initial data regarding biochemical osmotic stress responses in coffee tissues based on simple staining and imaging steps. Moreover, it is likely that the same method may be applicable to other types of stresses and plant species upon minor adjustments. [ABSTRACT FROM AUTHOR]

Social Impact Statement: Central America is renowned for producing some of the world's finest coffee, prized for its quality and flavor. With coffee being a major export crop for many countries, the region's economic, social, and cultural well‐being is closely linked to the success of its coffee industry. Coffee breeding supports the industry's long‐term sustainability and competitiveness by developing new varieties that are more productive, disease‐resistant, climate resilient, and adapted to the coffee producer's realities. Ongoing efforts in coffee breeding have significant implications for the livelihoods of thousands of coffee farmers and their families, the economies of Central American countries, and the preservation of the region's rich coffee tradition and culture. Summary: The central objective is to understand how coffee breeding programs have evolved to help coffee farmers adapt to the rapidly changing economic, political, institutional, and environmental conditions since 1990. Before then, coffee breeders focused primarily on productivity, developing dwarf varieties bred for intensive monoculture production. Since 1990, breeders have shifted their work to address climate change, new diseases and pests, a growing industry interest in cup quality, and unprecedented price volatility. Much of the breeding work has shifted from public institutions to international technical assistance agencies, international non‐governmental organizations (NGOs), and private companies. Their new programs focus on developing F1 coffees designed for agroforestry production and, which, can be developed quickly in response to changing conditions. This case study also complicates narratives about the place of hybrid coffees in agricultural modernization during the 20th and 21st centuries.Analyze documents produced over the past 30 years by key breeding organizations, governments, trade organizations, to assess the evolution of breeding programs in historical context, and the progress of the new coffees in the field.Some F1 hybrids have shown considerable promise, but challenges surrounding their propagation, distribution, and cost—as well as their suitability for the specialty coffee market—have so far prevented farmers from adopting them on a large scale.The switch to F1 coffee breeding represents a deep strategic shift in coffee breeding in Central America, more attuned to the needs of coffee farmers. While the F1 coffees can help farmers address many of the farmers' technical challenges, cost and logistical issues remain a challenge. [ABSTRACT FROM AUTHOR]

Coffee quality and varieties matter for its ultimate flavor. As multiple factors influence taste during coffee production, hyperspectral imaging (HSI) stands out with great potential for quality assessment, defect supervision, and character identification. With a relatively comprehensive summary of current HSI-based research in coffee, this literature review critically reveals HSI's competence and present shortcomings in practical applications within the coffee industry. Sequentially, potential applications of HSI technology in coffee component analysis and flavor estimation, blemish diagnosis, and origins or attributes identification are illustrated. Finally, several key challenges and future perspectives of HSI are indicated from a practical and sustainable perspective, with digitalization as a major goal in the coffee industry. [ABSTRACT FROM AUTHOR]