1. Methods for ChIP-seq Normalization and Their Application for the Analysis of Regulatory Elements in Brain Cells.
- Author
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Gusev, F. E., Andreeva, T. V., and Rogaev, E. I.
- Subjects
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IMMUNOPRECIPITATION , *CHROMATIN , *AUTOPSY , *EPIGENOMICS , *BIOINFORMATICS , *GENOMICS - Abstract
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) has become one of the major tools to elucidate gene-expression regulation. Similar to other molecular profiling methods, ChIP-seq is sensitive to several technical biases which affect downstream results, especially in cases when material quality is difficult to control, for example, frozen post-mortem human tissue. However, methods for bioinformatics analysis improve every year and allow the mitigation of these effects after sequencing by adjusting for both technical ChIP-seq biases and more general biological biases like postmortem interval or cell heterogenity of the sample. Here we review a wide selection of ChIP-seq normalization methods with a focus on application in specific experimental settings, in particular when brain tissue is investigated. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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