1. MAATrica: a measure for assessing consistency and methods in medicinal and nutraceutical chemistry papers.
- Author
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Panzarella, Giulia, Gallo, Alessandro, Coecke, Sandra, Querci, Maddalena, Ortuso, Francesco, Hofmann-Apitius, Martin, Veltri, Pierangelo, Bajorath, Jürgen, and Alcaro, Stefano
- Subjects
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PHARMACEUTICAL chemistry , *SEARCH engines , *TEXT mining , *RESEARCH personnel , *DATA mining , *FUNCTIONAL foods - Abstract
The growing number of scientific papers and document sources underscores the need for methods capable of evaluating the quality of publications. Researchers who are looking for relevant papers for their studies need ways to assess the scientific value of these documents. One approach involves using semantic search engines that can automatically extract important knowledge from the growing body of text. In this study, we introduce a new metric called "MAATrica," which serves as the foundation for an innovative method designed to evaluate research papers. MAATrica offers a new way to analyze and categorize text, focusing on the consistency of research documents in the life sciences, particularly in the fields of medicinal and nutraceutical chemistry. This method utilizes semantic descriptions to cover in silico experiments, as well as in vitro and in vivo essays. Created to aid in evaluation processes like peer review, MAATrica uses toolkits and semantic applications to build the proposed measure, identify scientific entities, and gather information. We have applied MAATrica to roughly 90,000 papers and present our findings here. [Display omitted] • MAATrica is a novel metric for assessing the coherence of methodologies in research papers within the fields of medicinal and nutraceutical chemistry. • MAATrica utilizes SciWalker (SW) as semantic search engine and ontologies to automate knowledge extraction and evaluate research papers. • MAATrica metric has been tested and validated using a dataset comprising approximately 90,000 papers within the SW platform. • MAATrica's reliability has undergone testing through comparisons with manual evaluations, revealing strong agreement and potential support for peer review. • MAATrica employs a user-controlled and customizable ontology, enabling personalized analysis of research papers in the fields of medicinal and nutraceutical chemistry. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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