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Simple Summary: Trachycarpus nanus is a national, second-class, rare and endangered plant in China, and a plant species endemic to Yunnan. This species has a high medicinal, ecological, and scientific value, but it is currently on the verge of extinction. Therefore, it is urgent to learn its extinction risk under global warming. We predict its multi-temporal distribution pattern based on the optimized MaxEnt model. The results show that precipitation is the most important factor. In the future, drastic climatic changes and human disturbances may lead to the extinction of this species, so it is necessary to strengthen the protection of this species using specific strategies. Climate change affects the geographical distribution of plant species. Rare Trachycarpus nanus with a narrow distribution range, high medicinal value and extremely small population is facing increasing extinction risks under global climate change. In this study, 96 recorded occurrences and 23 environmental factors are used to predict the potential suitable area of T. nanus based on the optimized MaxEnt (3.4.4) model and ArcGIS (10.7) software. The results show that when the parameters are FC = LQ and RM = 1, the MaxEnt model is optimal and AUC = 0.946. The distribution patterns were predicted in the past, present, and four future phases, i.e., 2021–2040 (2030), 2041–2060 (2050), 2061–2080 (2070), and 2081–2100 (2090). The main factors are the annual precipitation (bio12), mean temperature of the coldest quarter (bio11), temperature seasonality (bio4), precipitation of the wettest quarter (bio16), and isothermality (bio3). The potential distribution of T. nanus is primarily concentrated in central Chuxiong, encompassing a total potential suitable area of 5.65 × 104 km2. In historical periods, the total habitat area is smaller than that in the present. In the future, the potential suitable area is generally increased. The centroid analysis shows that T. nanus will move to a high-altitude area and to the southeast. But its dispersal capacity may not keep up with the climate change rate. Therefore, additional protection sites for this species should be appropriately established and the habitat connectivity should be enhanced. [ABSTRACT FROM AUTHOR]