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Summary: Anthropogenic introductions are known to be changing the structure of global phytogeographical regions (phytoregions), but previous studies have been limited by incomplete or biased data sets that are likely to underestimate the importance of threatened species. In this work, we analyse a comprehensive data set of all known species and their occurrences (at botanical country resolution) to quantify the impact of potential future extinction scenarios.We used Infomap, a network‐based community detection algorithm, to generate phytoregional delineations for six species‐distribution scenarios (native, introduced and extinctions of species that are either documented as threatened or likely to be threatened, as well as combinations thereof). We compared the numbers and sizes of phytoregions to characterise the amount and spatial distribution of changes in global phytoregions under each scenario.Extinctions of species that are predicted to be threatened had a greater homogenising effect on phytoregions than introductions, and there was some evidence that introductions may even mitigate the homogenisation caused by extinctions, though this interaction is complex.This research provides the first evidence that the loss of threatened species would have significant ramifications for global phytoregions and demonstrates the need to consider extinction processes in studies of anthropogenic effects on biodiversity patterns. This article is part of the Special Collection 'Global plant diversity and distribution'. See https://www.newphytologist.org/global-plant-diversity for more details. [ABSTRACT FROM AUTHOR]

This article is part of the Special Collection 'Global plant diversity and distribution'. See https://www.newphytologist.org/global-plant-diversity for more details. [ABSTRACT FROM AUTHOR]