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Dune dynamics and associated sedimentary fluxes have been estimated over a period of a week in the river Seine characterised by limited sediment supply. Distributed into two corridors, typical medium and small dunes associated with fluvial environments have been characterised from multibeam data acquired on four dates, 23-29 March 2021, after a limited peak flood. Dune morphometric parameters have been quantified on cross-dune 1 m spacing of bed elevation profiles and dune migration rates have been calculated by analysing successive multibeam acquisitions. Evidence of limited sediment supply conditions have been recognised from areas uncovered by mobile sediment in the troughs between medium dunes. Under such conditions, bedload transport associated with dune migration has been estimated using three methods: differential bathymetry, dune tracking and the Van Rijn empirical formula using a correction factor accounting for limited sediment supply conditions. The three methods provide similar bedload fluxes (less than an order of magnitude difference), and the small differences are related to input data uncertainties and the capability of these methods to capture sediment transport processes, such as sediment bypassing dunes. Based on field observations, this paper brings new constrains to the relationships between dune morphological parameters, migration rates and sedimentary fluxes and environmental parameters (sediment grain size, flow velocity and water depth) under limited supply conditions in a real river. • Dune morphologies and shapes are constrained by sediment availability • Limited supply of sediment restricts bedload transport associated with dune migration • Differential bathymetry captures a portion of suspended bedload bypassing dunes [ABSTRACT FROM AUTHOR]