28 results on '"Kohli, Ekta"'
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2. Anti-microbial efficacy of a scientifically developed and standardized herbal-alcohol sanitizer.
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Tulsawani, Rajkumar, Verma, Kalyani, Kohli, Ekta, Sharma, Purva, Meena, Yogesh Singh, Amitabh, Ponmariappan, Sarkaraisamy, Kumar, Prashant, and Maithani, Rekha
- Abstract
Hands are the primary mode of transmission of microbe-based infections, as they harbor normal microbiota and pathogenic microbes. SARS-CoV-2 has endangered lives worldwide, and WHO has recommended good hygiene practices, especially hand hygiene. In addition, other infectious diseases like diphtheria, measles, tuberculosis, HIV, malaria, etc. are spreading in the shadow of the COVID-19 pandemic. The anti-microbial efficiency of two in-house developed herbal-alcohol based hand sanitizers containing Azadirachta indica, Citrus limon, Zingiber officinale, and Aloe vera (HS1) and Zingiber officinale replaced with Ocimum sanctum (HS2) was evaluated. HS1, with Zingiber officinale, and HS2, with Ocimum sanctum, herbal sanitizers showcased in-vitro anti-viral activity on MDCK cells using the reference strain of influenza A virus, A/PR/8/34 (H1N1), and reduced 99.99% of microbial load within 30 s of contact time, estimated by the Antimicrobial Susceptibility Testing Method. On volunteers, HS1 and HS2 were more effective than alcohol-based WHO sanitizers. Moreover, HS2 sanitizer is more effective against viruses and has better efficiency and hedonic qualities in volunteers than HS1. These sanitizers don’t irritate or dry up the skin and have a longer shelf life. Overall, findings reveal that herbal-alcohol-based sanitizers are promising hand hygiene products with the capability of reducing microbial load. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Chemical engineering of nanogel drug carriers: increased bioavailability and decreased cytotoxicity
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Vinogradov, Serguei V., Kohli, Ekta, Zeman, Arin, and Kabanov, Alexander V.
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Article - Published
- 2006
4. Interactions between the quality control ubiquitin ligase CHIP and ubiquitin conjugating enzymes.
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Zhen Xu, Kohli, Ekta, Devlin, Karl I., Bold, Michael, Nix, Jay C., and Misra, Saurav
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PROTEIN-protein interactions , *LIGASES , *BIOCONJUGATES , *UBIQUITIN , *HEAT shock proteins - Abstract
Background: Ubiquitin (E3) ligases interact with specific ubiquitin conjugating (E2) enzymes to ubiquitinate particular substrate proteins. As the combination of E2 and E3 dictates the type and biological consequence of ubiquitination, it is important to understand the basis of specificity in E2:E3 interactions. The E3 ligase CHIP interacts with Hsp70 and Hsp90 and ubiquitinates client proteins that are chaperoned by these heat shock proteins. CHIP interacts with two types of E2 enzymes, UbcH5 and Ubc13-Uev1a. It is unclear, however, why CHIP binds these E2 enzymes rather than others, and whether CHIP interacts preferentially with UbcH5 or Ubc13-Uev1a, which form different types of polyubiquitin chains. Results: The 2.9 Å crystal structure of the CHIP U-box domain complexed with UbcH5a shows that CHIP binds to UbcH5 and Ubc13 through similar specificity determinants, including a key S-PA motif on the E2 enzymes. The determinants make different relative contributions to the overall interactions between CHIP and the two E2 enzymes. CHIP undergoes auto-ubiquitination by UbcH5 but not by Ubc13-Uev1a. Instead, CHIP drives the formation of unanchored polyubiquitin by Ubc13-Uev1a. CHIP also interacts productively with the class III E2 enzyme Ube2e2, in which the UbcH5- and Ubc13-binding specificity determinants are highly conserved. Conclusion: The CHIP:UbcH5a structure emphasizes the importance of specificity determinants located on the long loops and central helix of the CHIP U-box, and on the N-terminal helix and loops L4 and L7 of its cognate E2 enzymes. The S-P-A motif and other specificity determinants define the set of cognate E2 enzymes for CHIP, which likely includes several Class III E2 enzymes. CHIP's interactions with UbcH5, Ube2e2 and Ubc13-Uev1a are consistent with the notion that Ubc13-Uev1a may work sequentially with other E2 enzymes to carry out K63-linked polyubiquitination of CHIP substrates. [ABSTRACT FROM AUTHOR]
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- 2008
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5. Formulations of biodegradable Nanogel carriers with 5′-triphosphates of nucleoside analogs that display a reduced cytotoxicity and enhanced drug activity
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Kohli, Ekta, Han, Huai-Yun, Zeman, Arin D., and Vinogradov, Serguei V.
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PHARMACODYNAMICS , *PHARMACOLOGY , *EFFECT of drugs on physiological adaptation , *EFFECT of drugs on appetite - Abstract
Abstract: Therapies including nucleoside analogs are associated with severe toxic side effects and acquirement of drug resistance. We have previously reported the drug delivery in the form of 5′-triphosphates (NTP) encapsulated in cross-linked cationic networks of polyethylenimine (PEI) and PEG/Pluronic® polymers (Nanogels). In this study, Nanogels, containing biodegradable PEI that could easily dissociate in reducing cytosolic environment and form products with minimal toxicity, were synthesized and displayed low cytotoxicity. Toxicity of Nanogels was clearly dependent on the total positive charge of carriers and was 5–6 fold lower for carriers loaded with NTP. Though intracellular ATP level was immediately reduced by ca. 50% following the treatment with Nanogels, it was largely restored 24 h later. Effect of Nanogels on various respiratory components of cells was reversible too, and, therefore, resulted in low immediate cell death. Nanogel alone and formulations with AZT-TP demonstrated a much lower mitochondrial toxicity than AZT. As an example of potential antiviral applications of low-toxic Nanogel carriers, a 5′-triphosphorylated Ribavirin–Nanogel formulation was prepared that demonstrated a 30-fold decrease in effective drug concentration (EC90) and, totally, a 10-fold increase in selectivity index compared to the drug alone in MDCK cells infected with influenza A virus. [Copyright &y& Elsevier]
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- 2007
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6. Acetoxy drug: protein transacetylase of buffalo liver—characterization and mass spectrometry of the acetylated protein product
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Kohli, Ekta, Gaspari, Marco, Raj, Hanumantharao G., Parmar, Virinder S., Sharma, Sunil K., van der Greef, Jan, Kumari, Ranju, Gupta, Garima, Seema, Khurana, Pulkit, Tyagi, Yogesh K., Watterson, Arthur C., and Olsen, Carl E.
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LIVER , *WATER buffalo , *ACETYLTRANSFERASES , *ENZYMES , *METABOLITES - Abstract
The purification and characterization of the buffalo liver microsomal transacetylase (TAase) catalyzing the transfer of acetyl groups from a model acetoxy drug: 7,8-diacetoxy-4-methylcoumarin (DAMC) to GST3–3 has been described here. The enzyme was routinely assayed using DAMC and cytosolic GST as the substrates and was partially purified from microsomes of the buffalo liver. The enzyme was found to have approximate molecular of weight 65 kDa. The action of TAase and DAMC on liver cytosolic GST resulted in the formation of monoacetoxymonohydroxy-4-methylcoumarin (MAMHC) and 7,8-dihydroxy-4-methylcoumarin (DHMC), although the former was the major metabolite. The buffalo liver microsomal TAase exhibited hyperbolic kinetics and yielded Km (1667 μM) and Vmax (192 units) when the concentration of DAMC was varied keeping the concentration of GST constant. After having characterized the nature of the substrates and a product of the TAase-catalyzed reaction, we set out to identify the acetylated protein which is another product of the reaction. GST3–3 was used as a model protein substrate for the action of TAase using DAMC as the acetyl donor. The subunit of control and modified GST3–3 were separated by SDS-polyacrylamide gel electrophoresis (PAGE) and digested with trypsin. The tryptic peptides were extracted from the gel pieces and analyzed by matrix assisted laser desorption/ionization–time of flight–mass spectrometry (MALDI-TOFMS). The data search for calibrated and labeled mass peaks of peptides was performed on the Matrix Science Server using the search engine Mascot. The peptide maps so obtained covered 97% of the GST3–3 sequence. On comparison of MALDI peptide maps of modified and control GST, seven new peaks were recognized corresponding to the potentially acetylated peptides in peptide map. The mass value of each of them was 42 Da higher than the theoretical mass of a non-modified GST3–3 tryptic peptide, strongly suggesting acetylation. By examining the fragmentation patterns and by comparing experimental and predicted values for MS/MS daughter ions, the identity of the seven acetylated GST tryptic peptides could be confirmed by the application of LC/MS/MS. In the modified GST, N-terminal proline and six lysines (Lys51, Lys82, Lys123, Lsy181, Lys191 and Lys210) were found to be acetylated. The structure of acetylated GST revealed that the lysines that underwent acetylation were peripheral in positions. [Copyright &y& Elsevier]
- Published
- 2004
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7. Mechanism of biochemical action of substituted 4-methylbenzopyran-2-ones. Part 9: Comparison of acetoxy 4-methylcoumarins and other polyphenolic acetates reveal the specificity to acetoxy drug: protein transacetylase for pyran carbonyl group in proximity to the oxygen heteroatom
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Singh, Ishwar, Kohli, Ekta, Raj, Hanumantharao G., Gyanda, Kapil, Jain, Sapan K., Tyagi, Yogesh K., Gupta, Garima, Kumari, Ranju, Kumar, Ajit, Pal, Giridhari, Prasad, Ashok K., Rastogi, Ramesh C., Olsen, Carl E., Jain, Subhash C., and Parmar, Virinder S.
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PYRAN , *COUMARINS , *ACETYLTRANSFERASES - Abstract
The evidences for the possible enzymatic transfer of acetyl groups (catalyzed by a transacetylase localized in microsomes) from an acetylated compound (acetoxy-4-methylcoumarins) to enzyme proteins leading to profound modulation of their catalytic activities was cited in our earlier publications in this series. The investigations on the specificity for transacetylase (TA) with respect to the number and positions of acetoxy groups on the benzenoid ring of coumarin molecule revealed that acetoxy groups in proximity to the oxygen heteroatom (at C-7 and C-8 positions) demonstrate a high degree of specificity to TA. These studies were extended to the action of TA on acetates of other polyphenols, such as flavonoids and catechin with a view to establish the importance of pyran carbonyl group for the catalytic activity. The absolute requirement of the carbonyl group in the pyran ring of the substrate for TA to function was established by the observation that TA activity was hardly discernible when catechin pentacetate and 7-acetoxy-3,4-dihydro-2,2-dimethylbenzopyran (both lacking pyran ring carbonyl group) were used as the substrates. Further, the TA activity with flavonoid acetates was remarkably lower than that with acetoxycoumarins, thus suggesting the specificity for pyran carbonyl group in proximity to the oxygen heteroatom. The biochemical properties of flavonoid acetates, such as irreversible activation of NADPH cytochrome C reductase and microsome-catalyzed aflatoxin B1 binding to DNA in vitro were found to be in tune with their specificity to TA. [Copyright &y& Elsevier]
- Published
- 2002
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8. Establishment of the enzymatic protein acetylation independent of acetyl CoA: recombinant glutathione S-transferase 3-3 is acetylated by a novel membrane-bound transacetylase using 7,8-diacetoxy-4-methyl coumarin as the acetyl donor
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Kohli, Ekta, Gaspari, Marco, Raj, Hanumantharao G., Parmar, Virinder S., van der Greef, Jan, Gupta, Garima, Kumari, Ranju, Prasad, Ashok K., Goel, Sanjay, Pal, Giridhari, Tyagi, Yogesh K., Jain, Subhash C., Ahmad, Nizamuddin, Watterson, Arthur C., and Olsen, Carl E.
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ENZYMES , *ACETYLATION , *ACETYLCOENZYME A - Abstract
The current knowledge on biological protein acetylation is confined to acetyl CoA-dependent acetylation of protein catalyzed by specific acetyl transferases and the non-enzymatic acetylation of protein by acetylated xenobiotics such as aspirin. We have discovered a membrane-bound enzyme catalyzing the transfer of acetyl groups from the acetyl donor 7,8-diacetoxy-4-methyl coumarin (DAMC) to glutathione S-transferase 3-3 (GST3-3), termed DAMC:protein transacetylase (TAase). The purified enzyme was incubated with recombinant GST3-3 subunit and DAMC, the modified protein was isolated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE) in gel digested with trypsin and the tryptic digest was analyzed by mass spectrometry. The N-terminus and six lysines, Lys-51, -82, -124, -181, -191 and -210, were found to be acetylated. The acetylation of GST3-3 described above was not observed in the absence of either DAMC or TAase. These results clearly establish the phenomenon of protein acetylation independent of acetyl CoA catalyzed by a hitherto unknown enzyme (TAase) utilizing a certain xenobiotic acetate (DAMC) as the active acetyl donor. [Copyright &y& Elsevier]
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- 2002
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9. Comparison of the Prevention of Aflatoxin B1-Induced Genotoxicity by Quercetin and Quercetin Pentaacetate
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Kohli, Ekta, Raj, Hanumantharao G., Kumari, Ranju, Rohil, Vishwajit, Kaushik, Narendra K., Prasad, Ashok K., and Parmar, Virinder S.
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AFLATOXINS , *QUERCETIN - Abstract
Earlier work carried out in our laboratory highlighted the mode of action of acetoxy 4-methylcoumarins in preventing the genotoxicity of aflatoxin B1 (AFB1). We have in this report extended the observations to quercetin pentaacetate (QPA), which unlike quercetin (Q) has demonstrated time-dependent inhibition of liver microsome catalysed AFB1 epoxidation as measured by AFB1 binding to DNA. The action of QPA is similar to that of the acetoxy 4-methylcoumarins in that they are acted upon by microsomal transacetylase leading to modulation of catalytic activities of certain enzymes (such as P-450 enzymes, NADPH cytochrome C reductase and glutathione S-transferase) possibly by way of protein acetylation. In the present work, we have documented the transacetylase-mediated action of QPA in preventing genotoxicity due to AFB1. [Copyright &y& Elsevier]
- Published
- 2002
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10. Lab‐on‐Paper Approach in lieu of Microfluidic Paper Assisted Platform: 'ASSURED' sensing through Modified Graphene Quantum Dots.
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Agrawal, Neha, Baghel, Doli, Prasad, Dipti N., and Kohli, Ekta
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QUANTUM dots , *CRAYONS , *GRAPHENE , *FLUORESCENCE quenching , *PENETRATION mechanics , *WAXES , *SENSES - Abstract
Microfluidic based sensors are one of the emerging alternatives for bringing solutions studies on paper platforms. Microfluidic paper assisted platform was developed over here through a simple, easy, cost effective and instrument free process. The self‐same method of waxing through crayoning, was estimated thoroughly on different paper platforms. Varied parameter including type of crayoning, way of patterning, color effect, wicking rate and channel optimization was performed on paper milieus. Optimized time of baking for obtaining controlled penetration ranges from 2 min to 8 min depending on the type of paper used. Wax crayoning was preferred over oil pasteling for making hydrophobic barriers uniformly, solid as well fully penetrated within paper inner layers. Fabrication through this easy cost‐effective route allows a formation of hydrophilic reaction or sensing zone of 0.25 cm2 with sufficient reactive area. Further sensing of dopamine on paper platform was carried using paper chip adsorbed with fluorescent modified graphene quantum dots as sensing material. The patterned paper showed advantage as only few microliter (5 μl to 10 μl) range of sample volume was required for testing. Fluorescence quenching with increase of concentration was witnessed where around 25–75 μM dopamine concentration was positively tested through naked eye; which for the first time was demonstrated here via robust wax crayoning method for developing paper based biosensor. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Zinc oxide nanoparticles trigger dysfunction of mitochondrial respiratory complexes and repair dynamics in human alveolar cells.
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Anand, Avnika Singh, Jain, Khushbu, Chauhan, Amitabh, Prasad, Dipti N, and Kohli, Ekta
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MITOCHONDRIA , *ZINC oxide , *CHIMERIC proteins , *NANOPARTICLES , *EPITHELIAL cells , *CONSUMER goods - Abstract
Zinc oxide nanoparticles (ZnO NP) are commonly used engineered NPs with extensive usage in consumer products, thus leading to direct exposure to humans. The direct route of exposure is through inhalation. Once inhaled, these particles accumulate in the lungs, increasing the chances of respiratory tract illness through cellular organelle damage. Zinc oxide nanoparticle-treated lung cells are reported to display cytotoxicity, increase DNA damage, and induce oxidative stress. The current study focused on the effects of ZnO NPs on mitochondrial dynamics (fission and fusion) in human lung epithelial cells (A549). The lung cells were exposed to ZnO NPs at 50 and 100 μg/ml concentrations, and their mitochondrial dynamics were assessed to understand the effects of the NPs. Treatment with ZnO NPs reduced the activity of mitochondrial complex I and complex III and altered mitochondrial structural and functional characteristics in a concentration-dependent manner. Zinc oxide nanoparticles exposure showed an increase in small and round-shaped mitochondria. The expression of various fission proteins (Drp1 and Fis1) and fusion proteins (Mfn1, Mfn2, and OPA1) was altered upon exposure to ZnO NPs. Our studies showed dysfunction of the mitochondria induced by ZnO NPs. In fibroblast mitochondrial dynamics, fission symbolizes threshold damage. In this paper, we have shown that the mitochondrial fission phenotype increased upon exposure to ZnO NPs. The paper emphasizes that these particles enter mitochondria, triggering a stress response that results in the removal of mitochondria via fission. It provides relevant data for safety guidelines to ensure the safer use of these particles. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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12. Corrigendum to: <B>Establishment of the enzymatic protein acetylation independent of acetyl CoA: recombinant glutathione S-transferase 3-3 is acetylated by a novel membrane-bound transacetylase using 7,8-diacetoxy-4-methyl coumarin as the acetyl donor</B> (FEBS 26626): [FEBS Letters 530 (2002) 139–142]
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Kohli, Ekta, Gaspari, Marco, Raj, Hanumantharao G., Parmar, Virinder S., van der Greef, Jan, Gupta, Garima, Kumari, Ranju, Prasad, Ashok K., Goel, Sanjay, Pal, Giridhari, Tyagi, Yogesh K., Jain, Subhash C., Ahmad, Nizamuddin, Watterson, Arthur C., and Olsen, Carl E.
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- 2002
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13. Alteration in cerebral blood flow, kynurenines with respect to mood profile in freshly recruited armed forces personnel.
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Verma, Kalyani, Amitabh, Chandra, Mukesh, Prasad, Dipti N., Debnath, Chandan, Mohanty, Haribandu, Kohli, Ekta, and Reddy, M. Prasanna K.
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MILITARY personnel , *CEREBRAL circulation , *QUINOLINIC acid , *VASCULAR resistance , *FLOW velocity - Abstract
The present study is conducted to understand the association of mood profile with the kynurenine pathway (KP) metabolites, and cerebral hemodynamics in freshly recruited central armed forces personnel. Profile of Mood States questionnaire was utilized to assess mood profile, and Total Mood Disturbance (TMD) score was calculated. Transcranial Doppler was used to record blood flow velocity bilaterally of the middle cerebral artery. Chromatographic profile of the kynurenine metabolites was obtained in serum. Further, personnel were stratified according to sociodemographic variables (gender, age and diet) to observe the changes in their KP metabolic status. An activation of the kynurenic acid branch of the KP and the reduction in the mean blood flow velocity, and an increase in Gosling pulsatility index (PI) were observed in females having high TMD score. On gender comparative analysis, kynurenine metabolites of quinolinic acid branch and serotonin were significantly high in males. In males, with increase in age, a significant increase in the quinolinic acid branch of the KP was observed. Furthermore, a significant difference in level metabolites of the KP among the vegetarian and non-vegetarian groups was also observed. In conclusion we observed that increased TMD score was associated with cerebral hypoperfusion and higher vascular resistance along with activation of the KP. Our findings highlighted the importance of multi-facet brain function to showcase the close interaction of various dimensionalities and true picture of the assessee. • Mood disturbance associated with cerebral hypoperfusion and high vascular resistance. • Activation of the kynurenine pathway in females with disturbed mood score. • Psychology links with physiology, and neuroactive metabolites. • Kynurenine metabolites of quinolinic acid branch and serotonin were high in males. • Metabolites of quinolinic acid branch increased with age in case of the males. [ABSTRACT FROM AUTHOR]
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- 2022
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14. RACK1 interacts with filamin-A to regulate plasma membrane levels of the cystic fibrosis transmembrane conductance regulator.
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Smith, Laura, Litman, Paul, Kohli, Ekta, Amick, Joseph, Page, Richard C., and Misra, Saurav
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CYSTIC fibrosis transmembrane conductance regulator , *GENETIC mutation , *FILAMINS , *CELL membranes , *CHLORIDE channels , *EPITHELIAL cells , *GENETIC disorders - Abstract
Mutations in cystic fibrosis transmembrane regulator (CFTR), a chloride channel in the apical membranes of secretory epithelial cells, underlie the fatal genetic disorder cystic fibrosis. Certain CFTR mutations, including the common mutation ΔF508-CFTR, result in greatly decreased levels of active CFTR at the apical membrane. Direct interactions between CFTR and the cytoskeletal adaptors filamin-A (FlnA) and Na/H exchanger regulatory factor 1 (NHERF1) stabilize the expression and localization of CFTR at the plasma membrane. The scaffold protein receptor for activated C kinase 1 (RACK1) also stabilizes CFTR surface expression; however, RACK1 does not interact directly with CFTR and its mechanism of action is unknown. In the present study, we report that RACK1 interacts directly with FlnA in vitro and in a Calu-3 airway epithelial cell line. We mapped the interaction between RACK1 and FlnA to the WD4 and WD6 repeats of RACK1 and to a segment of the large rod domain of FlnA, consisting of immunoglobulin- like repeats 8-15. Disruption of the RACK1-FlnA interaction causes a reduction in CFTR surface levels. Our results suggest that a novel RACK1-FlnA interaction is an important regulator of CFTR surface localization. [ABSTRACT FROM AUTHOR]
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- 2013
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15. Effects of extremely low-frequency electromagnetic field on different developmental stages of Drosophila melanogaster.
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Agrawal, Neha, Verma, Kalyani, Baghel, Doli, Chauhan, Amitabh, Prasad, Dipti N., Sharma, Sanjeev K., and Kohli, Ekta
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DROSOPHILA melanogaster , *ELECTROMAGNETIC fields , *TRYPAN blue , *REACTIVE oxygen species , *ELECTROMAGNETIC radiation - Abstract
The model biological organism Drosophila melanogaster has been utilized to assess the effect of extremely low-frequency electromagnetic field (ELF-EMF) on locomotion, longevity, developmental dynamics, cell viability and oxidative stress. Developmental stages of Drosophila melanogaster (Oregon R strain) individually exposed to ELF-EMF (75 Hz, 550 µT) for 6 h once for acute exposure. For chronic exposure, complete life cycle of fly, that is, egg to adult fly was exposed to ELF-EMF for 6 h daily. The effect of exposure on their crawling and climbing ability, longevity, development dynamics, cellular damage and oxidative stress (generation of reactive oxygen species (ROS)) was evaluated. The crawling ability of larvae was significantly (p <.05) reduced on acute (third stage instar larvae) as well as chronic exposure (F0 and F1 larvae). When locomotion of flies was tested using climbing assay, no alteration was observed in their climbing ability under both acute and chronic exposure; however, when their speed of climbing was compared, a significant decrease in speed of F1 flies was observed (p =.0027) on chronic exposure. The survivability of flies was significantly affected under chronic and acute exposure (at third stage instar larvae). In case of acute exposure of the third stage instar larvae, although all the flies were eclosed by the 17th day, there was a significant decline in the number of flies (p =.007) in comparison to control. While in case of chronic exposure apart from low number of flies eclosed in comparison to control, there was delay in eclosion by one day (p =.0004). Using trypan blue assay, the internal gut damage of third stage instar larvae was observed. Under acute exposure condition at third stage instar larvae, 30% larvae has taken up trypan blue, while only 10% larvae from acute exposure at adult stage. On chronic exposure, 50% larvae of the F1 generation have taken up trypan blue. On evaluation of oxidative stress, there is a significant rise in ROS in case of acute exposure at third stage instar larvae (p =.0004), adult fly stage (p =.0004) and chronic exposure (p =.0001). ELF-EMF has maximum effects on acute exposure of third stage instar larvae and chronic exposure (egg to adult fly stage). These results suggest that electromagnetic radiations, though, have become indispensible part of our lives but they plausibly affect our health. [ABSTRACT FROM AUTHOR]
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- 2021
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16. Mechanism of biochemical action of substituted 4-methylbenzopyran-2-ones. Part 10: identification of inhibitors for the liver microsomal acetoxycoumarin: protein transacetylase
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Raj, Hanumantharao G., Singh, Ishwar, Kohli, Ekta, Kumari, Ranju, Gupta, Garima, Tyagi, Yogesh K., Kumar, Ajit, Prasad, Ashok K., Kaushik, Narendra K., Olsen, Carl E., Watterson, Arthur C., and Parmar, Virinder S.
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BENZOPYRANS , *POLYPHENOLS - Abstract
The quantitative structure–activity relationship (QSAR) studies conducted by us earlier revealed the cardinal role of the pyran ring carbonyl group in the acetoxy polyphenolic compounds for the acetoxy polyphenol:protein transacetylase (TAase) activity. Hence, an attempt was made to examine whether such substrate analogues of benzopyran acetates which lack in the pyran ring carbonyl group, such as 7-acetoxy-2,3-dihydro-2,2-dimethylbenzopyran (BPA), cetachin pentaacetate (CPA) and hematoxylin pentaacetate (HPA) could inhibit the 7,8-diacetoxy-4-methylcoumarin (DAMC):protein (glutathione-S-transferase) transacetylase activity. These compounds were indeed found to remarkably inhibit the TAase activity in a concentration dependent manner and exerted their inhibitory action very rapidly. Further BPA, CPA and HPA were found to abolish the TAase mediated activation of NADPH cytochrome C reductase as well as the inhibition of liver microsome catalyzed aflatoxin B1 (AFB1)-DNA binding by DAMC very effectively. These results strongly suggest that the acetoxybenzopyrans merit as potent inhibitors of TAase. [Copyright &y& Elsevier]
- Published
- 2003
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17. Nano-cubes over nano-spheres: shape dependent study of silver nanomaterial for biological applications.
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Agrawal, Neha, Mishra, Priyanka, Ranjan, Rahul, Awasthi, Punam, Srivastava, Alok, Prasad, Deepti, and Kohli, Ekta
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Silver nanomaterials (AgNMs) ubiquitously known for their biological applications are studied here in terms of their shape-dependent antibacterial and anti-biofilm effect. Chemically synthesized nano-cubes (AgNCs) with size range around 150–200 nm were compared for their biological activity with commercial nano-sphere (AgNS) of comparable size (~160 nm). The antibacterial activity against both Escherichia coli and Staphylococcus aureus showed higher activity for nano-cubes compared with nano-spheres.The synergistic role of AgNMs with antibiotic ampicillin was also found promising. A four times enhancement and an increase of nearly 25% of antibiotic activity at 0.0625 mg ml–1 concentration was found with 0.05 mg ml–1 of AgNCs in agar and broth media, respectively. Anti-biofilm effect towards E. coli and S. aureus was also evaluated. AgNCs showed equal importance in biofilm disruption with 20% inhibition activity, which was yet again found better in-comparison with AgNSs. The study shows that AgNCs with distinct faces and edges could show efficient anti-bacterial effect and so such intelligently designed material could pave path for imminent medical challenges. [ABSTRACT FROM AUTHOR]
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- 2021
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18. Exploring hydrophobic diastereomeric 2,6-anhydro-glycoheptitols for their enzymatic polymerization with PEG: towards delivery applications.
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Khatri, Vinod, Bhatia, Sumati, Deep, Satyanarayan, Kohli, Ekta, Haag, Rainer, Senapati, Nihar Nalini, and Prasad, Ashok K.
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DIETHYL sulfate , *BIOLOGICAL systems , *POLYMERIZATION , *FLUORESCENCE microscopy , *MICELLES , *HYDROPHOBIC compounds - Abstract
Two sugar PEG-based amphiphilic copolymers have been synthesized by Novozym®-435-catalyzed greener solvent free transesterification reaction of diastereomeric 2,6-anhydro-3,4,5-tri-O-benzyl-glucoheptitol and 2,6-anhydro-3,4,5-tri-O-benzyl-mannoheptitol with PEG-1000 diethyl ester in 80 and 76% yields, respectively. It has been observed that the configurational change at one of the carbons of diastereomeric 2,6-anhydro-heptitols has significant bearing on the degree of polymerization and characteristics of the synthesized polymers. Thus, the study of physico-chemical characteristics of synthesized anhydroglucoheptitol- and anhydromannoheptitol-PEG copolymers revealed that their aqueous solution forms spherical micelles of hydrodynamic diameters 11.2 and 6.4 nm, respectively. Micelles derived from both the amphiphilic copolymers have the potential to solubilize the hydrophobic dye, Nile red. Furthermore, a fluorescence microscopy study revealed that Nile red encapsulated micelles of synthesized amphiphilic copolymers uniformly internalized in A549 cells and thus can be used as a cargo carrier in biological systems. The viability of A549 cells was found to be very high even at a concentration of 500 μg mL−1 of copolymer indicating that they are cyto-compatible. [ABSTRACT FROM AUTHOR]
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- 2020
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19. Aluminum oxide nanoparticles mediated toxicity, loss of appendages in progeny of Drosophila melanogaster on chronic exposure.
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Anand, Avnika Singh, Gahlot, Urmila, Prasad, Dipti N., Amitabh, and Kohli, Ekta
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DROSOPHILA melanogaster , *ALUMINUM oxide , *STRIATED muscle , *CHILDBIRTH , *ALIMENTARY canal - Abstract
Aluminum oxide (Al2O3) nanoparticles (NPs) have a wide number of applications which cause intentional and unintentional exposure to humans, making it important to understand the nano-bio interaction. In this study, we made an attempt to evaluate the toxic effects of Al2O3 NPs chronic exposure on Drosophila melanogaster. Flies were exposed to Al2O3 NPs at concentration 0.1 and 1 mM via ingestion throughout their lifespan and progeny flies were screened for behavioral and phenotypic abnormalities. Behavioral abnormalities in flies were recorded through larval crawling, climbing in flies and two taste testing. Chronic exposure of Al2O3 NPs resulted in the loss of appendages in flies resulting in five legs flies, four legs flies and absence of haltere. Exposure to Al2O3 NPs caused renal failure in flies as observed by swollen abdomen. Our observations clearly showed that these NPs could cause detrimental health ailments which relate to human birth deformities and kidney failure. Damage at the cellular level was studied through proteomic profiling. Three hundred and seven unique proteins were expressed on exposure to Al2O3 NPs and 51 proteins were differentially expressed. Enrichment analysis of differentially expressed proteins showed significant alteration in striated muscle cell differentiation, digestive tract morphogenesis, phototransduction, regulation of chromatin organization and DNA duplex unwinding. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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20. Hypobaric hypoxia induced renal damage is mediated by altering redox pathway.
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Chhabra, Varun, Anand, Avnika Singh, Baidya, Amit Kumar, Malik, Shajer Manzoor, Kohli, Ekta, and Reddy, Maramreddy Prasanna Kumar
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HYPOXEMIA , *PATHOLOGICAL physiology , *PROTEOMICS , *BIOINFORMATICS , *LABORATORY rats - Abstract
Systemic hypobaric hypoxia is reported to cause renal damage; nevertheless the exact pathophysiological mechanisms are not completely understood. Therefore, the present study aims to explore renal pathophysiology by using proteomics approach under hypobaric hypoxia. Six to eight week old male Sprague Dawley rats were exposed to hypobaric hypoxia equivalent to altitude of 7628 metres (pO2-282mmhg) at 28°C and 55% humidity in decompression chamber for different time intervals; 1, 3, and7 days. Various physiological, proteomic and bioinformatic studies were carried out to examine the effect of chronic hypobaric hypoxia on kidney. Our data demonstrated mild to moderate degenerative tubular changes, altered renal function, injury biomarkers and systolic blood pressure with increase in duration of hypobaric hypoxia exposure. Renal proteomic analysis showed 38 differential expressed spots, out of which 25 spots were down regulated and 13 were up regulated in 7 dayhypobarichypoxic exposure group of rats as compared to normoxia control. Identified proteins were involved in specific molecular changes pertinent to endogenous redox pathways, cellular integrity and energy metabolism. The study provides an empirical evidence of renal homeostasis under hypobaric hypoxia by investigating both physiological and proteomics changes. The identification of explicit key proteins provides a valuable clue about redox signalling mediated renal damage under hypobaric hypoxia. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
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21. Chronic exposure of zinc oxide nanoparticles causes deviant phenotype in Drosophila melanogaster.
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Anand, Avnika Singh, Prasad, Dipti N., Singh, Shashi Bala, and Kohli, Ekta
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ZINC oxide , *NANOPARTICLES , *NANOSTRUCTURED materials , *DROSOPHILA melanogaster , *PHENOTYPES - Abstract
Zinc oxide nanoparticles (ZnO NPs) are commonly used nanomaterials (NMs) with versatile applications from high-end technologies to household products. This pervasive utilisation has brought human in the close interface with nanoparticles (NPs), hence questioning their safety prior to usage is a must. In this study, we have assessed the effects of chronic exposure to ZnO NPs (<50 nm) on the model organism Drosophila melanogaster . Potential toxic effects were studied by evaluating longevity, climbing ability, oxidative stress and DNA fragmentation. Ensuing exposure, the F0 (parent), F1, F2, F3 and F4 generation flies were screened for the aberrant phenotype. Flies exposed to ZnO NPs showed distinctive phenotypic changes, like deformed segmented thorax and single or deformed wing, which were transmitted to the offspring’s in subsequent generations. The unique abnormal phenotype is evident of chronic toxicity induced by ZnO NPs, although appalling, it strongly emphasize the importance to understand NPs toxicity for safer use. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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22. The interplay of calponin, wnt signaling, and cytoskeleton protein governs transgenerational phenotypic abnormalities in drosophila exposed to zinc oxide nanoparticles.
- Author
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Anand, Avnika Singh, Verma, Kalyani, Amitabh, Prasad, Dipti N., and Kohli, Ekta
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- *
WNT signal transduction , *ZINC oxide , *WNT proteins , *DROSOPHILA , *CYTOSKELETAL proteins - Abstract
ZnO nanoparticles (ZnO NPs) are widely used engineered nanomaterials. Due to induced genotoxicity, increased oxidative stress, and teratogenicity, these NPs have been reported to be toxic. In the present study, we emphasise the role of vital proteins in regulating ZnO NP-induced abnormal phenotypes, particularly the deformed thorax and single wing in the Drosophila melanogaster progeny fed on 0.1–10 mM ZnO NPs. To understand how protein expression regulates this particular phenotype on ZnO NPs exposure, toxicoproteomics profile of control and abnormal phenotype flies was generated using LC/MS/MS. Gene ontology enrichment studies of proteomics data were carried out using CLUEGO and STRAP software. The bioinformatics tool STRING was used to generate a protein–protein interaction map of key proteins of enrichment analysis. Following ZnO NP exposure, the differential expression of key proteins of the Wnt pathway was prominent. Altered expression of various proteins of the Wnt pathway (CaMKII), cytoskeleton (Actin), and calponin resulted in developmental defects in drosophila progeny. In addition, immunohistology studies showed a significant deviation in the expression of wingless protein of ZnO NPs treated larvae in comparison to control. According to these findings, the interaction of the wnt pathway and cytoskeletal proteins with ZnO NPs caused developmental abnormalities in the subsequent generation of drosophila, highlighting the transgenerational toxic effects of these nanoparticles. [Display omitted] • ZnO NPs alters wnt signaling pathway in Drosophila melanogaster. • Interaction of ZnO NPs with cytoskeleton proteins caused developmental deformities. • Transgenerational toxicity profile of flies shows lethal effects of ZnO NPs. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
23. Hypobaric Hypoxia Imbalances Mitochondrial Dynamics in Rat Brain Hippocampus.
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Jain, Khushbu, Prasad, Dipti, Singh, Shashi Bala, and Kohli, Ekta
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HYPOBARIC chambers , *HYPOXEMIA , *MITOCHONDRIAL physiology , *LABORATORY rats , *HIPPOCAMPUS physiology , *NEURON analysis - Abstract
Brain is predominantly susceptible to oxidative stress and mitochondrial dysfunction during hypobaric hypoxia, and therefore undergoes neurodegeneration due to energy crisis. Evidences illustrate a high degree of association for mitochondrial fusion/fission imbalance and mitochondrial dysfunction. Mitochondrial fusion/fission is a recently reported dynamic mechanism which frequently occurs among cellular mitochondrial network. Hence, the study investigated the temporal alteration and involvement of abnormal mitochondrial dynamics (fusion/fission) along with disturbed mitochondrial functionality during chronic exposure to hypobaric hypoxia (HH). The Sprague-Dawley rats were exposed to simulated high altitude equivalent to 25000 ft for 3, 7, 14, 21, and 28 days. Mitochondrial morphology, distribution within neurons, enzyme activity of respiratory complexes, Δψm, ADP: ATP, and expression of fission/fusion key proteins were determined. Results demonstrated HH induced alteration in mitochondrial morphology by damaged, small mitochondria observed in neurons with disturbance of mitochondrial functionality and reduced mitochondrial density in neuronal processes manifested by excessive mitochondrial fragmentation (fission) and decreased mitochondrial fusion as compared to unexposed rat brain hippocampus. The study suggested that imbalance in mitochondrial dynamics is one of the noteworthy mechanisms occurring in hippocampal neurons during HH insult. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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- View/download PDF
24. Hypothermic preconditioning attenuates hypobaric hypoxia induced spatial memory impairment in rats.
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Ranjan, Rahul, Amitabh, Prasad, Dipti N., and Kohli, Ekta
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SPATIAL memory , *RATS , *COGNITIVE ability , *THERAPEUTIC hypothermia , *SPRAGUE Dawley rats - Abstract
Hypobaric Hypoxia (HH) is known to cause oxidative stress in the brain that leads to spatial memory deficit and neurodegeneration. For decades therapeutic hypothermia is used to treat global and focal ischemia in preserving brain functions that proved to be beneficial in humans and rodents. Considering these previous reports, the present study was designed to establish the therapeutic potential of hypothermia preconditioning on HH induced spatial memory, biochemical and morphological changes in adult rats. Male Sprague Dawley rats were exposed to HH (7620 m, ~ 282 mmHg) for 1, 3 and 7 days with and without hypothermic preconditioning. Spatial learning memory was assessed by Morris water maze (MWM) test along with evaluation of hippocampal pyramidal neuron damage by histological study. Oxidative stress was measured by studying the levels of nitric oxide (NO), reactive oxygen species (ROS), lipid peroxidation (LPO), oxidized and reduced glutathione (GSSG and GSH). Results of MWM test indicated prolonged path length and latency to reach the platform in HH groups that regained to normal in cold pre-treated groups. A likely neurodegeneration was evident in HH groups that lessen in the cold pre-treated groups. Hypothermic preconditioning prevented spatial memory impairment and neurodegeneration in animals subjected to HH via decreasing the NO, ROS and LPO compared to control animals. The GSH level and GSH/GSSG ratio was found to be higher in preconditioned animals as compared to respective HH exposed animals, indicative of redox scavenging and restoration of hippocampal neuronal structure as well as spatial memory. Therefore, hypothermic preconditioning improves spatial memory deficit by reducing HH induced oxidative stress and hippocampal neurodegeneration, hence can be used as a multi-target prophylactic measure to combat HH induced neurodegeneration. [Display omitted] • High altitude visitors show poor cognitive function and mental performance. • Hypobaric hypoxia exposure compromises spatial learning memory in rats. • Hypothermia preconditioning minimized hypoxia induced neurodegeneration. • Hypothermia resulted in low oxidative stress, improved spatial memory and hippocampal structure. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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25. Calreticulin transacylase: Genesis, mechanism of action and biological applications
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Kumari, Ranju, Bansal, Seema, Gupta, Garima, Arora, Shvetambri, Kumar, Ajit, Goel, Sanjay, Singh, Prabhjot, Ponnan, Prija, Priya, Nivedita, Tyagi, Tapesh K., Baghel, Anil S., Manral, Sushma, Tandon, Rashmi, Joshi, Rini, Rohil, Vishwajeet, Gaspari, Marco, Kohli, Ekta, Tyagi, Yogesh K., Dwarakanath, Bilikere S., and Saluja, Daman
- Subjects
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CALRETICULIN , *ACYLTRANSFERASES , *ENZYME activation , *ENDOPLASMIC reticulum , *POLYPHENOLS , *ACETATES , *ACETYLATION , *BIOCHEMICAL mechanism of action - Abstract
Abstract: Our earlier investigations have identified a unique enzyme in the endoplasmic reticulum (ER) termed Acetoxy Drug: Protein Transacetylase (TAase) catalyzing the transfer of acetyl group from polyphenolic acetates (PA) to certain receptor proteins (RP). An elegant assay procedure for TAase was developed based on the inhibition of glutathione S-transferase (GST) due to acetylation by a model acetoxycoumarin, 7, 8-Diacetoxy-4-methylcoumarin (DAMC). TAase purified from various mammalian tissue microsomes to homogeneity exhibited a molecular weight (M.wt) of 55kDa. Further, by N-terminal sequencing TAase was identified as Calreticulin (CR), a multifunctional Ca2+-binding protein in ER lumen. The identity of TAase with CR was evidenced by proteomics studies such as immunoreactivity with anti-CR antibody and mass spectrometry. This function of CR was termed Calreticulin transacetylase (CRTAase). CRTAase was also found to mediate the transfer of acetyl group from DAMC to RP such as NADPH Cytochrome c Reductase (CYPR) and Nitric Oxide Synthase (NOS). The autoacetylation of purified human placental CRTAase concomitant with the acetylation of RP by DAMC was observed. CRTAase activity was found to be inhibited by Ca2+. Our investigations on the individual domains (N, P and C) of CR from a nematode Haemonchus contortus revealed that the P-domain alone was found to possess CRTAase activity. Based on the observation that the autoacetylated CR was a stable intermediate in the CRTAase catalyzed protein acetylation by PA, a putative mechanism was proposed. Further, CRTAase was also found capable of transferring propionyl group from a propoxy derivative of polyphenol, 7,8-Dipropoxy-4-methylcoumarin (DPMC) to RP and concomitant autopropionylation of CR was encountered. Hence, CRTAase was assigned the general term Calreticulin Transacylase. Also, CRTAase was found to act upon the biological acyl group donors, acetyl CoA and propionyl CoA. CRTAase mediated modulation of specific functional proteins by way of acylation was exploited to elicit the biological applications of PA. [Copyright &y& Elsevier]
- Published
- 2010
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26. Biochemical Basis of the Interaction between Cystic Fibrosis Transmembrane Conductance Regulator and Immunoglobulin-like Repeats of Filamin.
- Author
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Smith, Laura, Page, Richard C., Zhen Xu, Kohli, Ekta, Litman, Paul, Nix, Jay C., Ithychanda, Sujay S., Jianmin Liu, Jun Qin, Misra, Saurav, and Liedtke, Carole M.
- Subjects
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CYSTIC fibrosis , *GENETIC mutation , *GENETIC disorders , *CELL membranes , *CYTOSKELETON - Abstract
Mutations in the chloride channel cystic fibrosis transmembrane regulator (CFTR) cause cystic fibrosis, a genetic disorder characterized by defects in CFTR biosynthesis, localization to the cell surface, or activation by regulatory factors. It was discovered recently that surface localization of CFTR is stabilized by an interaction between the CFTR N terminus and the multidomain cytoskeletal protein filamin. The details of the CFTR-filamin interaction, however, are unclear. Using x-ray crystallography, we show how the CFTR N terminus binds to immunoglobulin-like repeat 21 of filamin A (FlnA-Ig21). CFTR binds to β-strands C and D of FlnAa-Ig21 using backbone-backbone hydrogen bonds, a linchpin serine residue, and hydrophobic side-chain packing. We use NMR to determine that the CFTR N terminus also binds to several other immunoglobulin-like repeats from filamin A in vitro. Our structural data explain why the cystic fibrosis-causing S13F mutation disrupts CFTR-filamin interaction. We show that FlnA-Ig repeats transfected into cultured Calu-3 cells disrupt CFTR-filamin interaction and reduce surface levels of CFTR. Our findings suggest that filamin A stabilizes surface CFTR by anchoring it to the actin cytoskeleton through interactions with multiple filamin Ig repeats. Such an interaction mode may allow filamins to cluster multiple CFTR molecules and to promote colocalization of CFTR and other filamin-binding proteins in the apical plasma membrane of epithelial cells. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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- View/download PDF
27. Structural basis of nucleotide exchange and client binding by the Hsp70 cochaperone Bag2.
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Zhen Xu, Page, Richard C., Gomes, Michelle M., Kohli, Ekta, Nix, Jay C., Herr, Andrew B., Patterson, Cam, and Misra, Saurav
- Subjects
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PROTEIN folding , *MOLECULAR chaperones , *ADENOSINE diphosphate , *ADENOSINE triphosphate , *NUCLEOTIDES - Abstract
Cochaperones are essential for Hsp70- and Hsc70-mediated folding of proteins and include nucleotide-exchange factors (NEFs) that assist protein folding by accelerating ADP-ATP exchange on Hsp70. The cochaperone Bag2 binds misfolded Hsp70 clients and also acts as an NEF, but the molecular basis for its function is unclear. We show that, rather than being a member of the Bag domain family, Bag2 contains a new type of Hsp70 NEF domain, which we call the 'brand new bag' (BNB) domain. Free and Hsc70-bound crystal structures of Bag2-BNB show its dimeric structure, in which a flanking linker helix and loop bind to Hsc70 to promote nucleotide exchange. NMR analysis demonstrates that the client binding sites and Hsc70-interaction sites of the Bag2-BNB overlap, and that Hsc70 can displace clients from Bag2-BNB, indicating a distinct mechanism for the regulation of Hsp70-mediated protein folding by Bag2. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
28. Acetoxy drug: Protein transacetylase catalyzed activation of human platelet nitric oxide synthase by polyphenolic peracetates
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Khurana, Pulkit, Kumari, Ranju, Vohra, Parag, Kumar, Ajit, Seema, Gupta, Garima, Raj, Hanumantharao G., Dwarakanath, Bilikere S., Parmar, Virinder S., Saluja, Daman, Bose, Mridula, Vij, Anjana, Chaudhary, Nabo K., Adhikari, Jawahar S., Tyagi, Yogesh K., and Kohli, Ekta
- Subjects
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BLOOD platelet aggregation , *NITRIC oxide , *NITROGEN compounds , *BLOOD vessels - Abstract
Abstract: An enhanced intracellular level of Nitric oxide (NO) is essential to ameliorate several pathological conditions of heart and vasculature necessitating the activation of NOS. We have projected in this report the acetylation of eNOS by polyphenolic peracetates (PA) catalyzed by the novel enzyme acetoxy drug: protein transacetylase (TAase) discovered in our laboratory as an unambiguous way of activating NOS which results in the manifestation of physiological action. The human platelet was chosen as the experimental system in order to validate the aforementioned proposition. PA caused profound irreversible activation of platelet NADPH cytochrome c reductase mediated by TAase. The convincing biochemical evidences are presented to show that PA could cause acetylation of the reductase domain of NOS leading to the activation of eNOS in tune with their specificities to platelet TAase. As a result, the enhanced level of NO due to activation of platelet eNOS by PA was found to inhibit the ADP-induced platelet aggregation. The present studies highlight for the first time the role of PA as the novel potent agent for enhancing the intracellular NO levels. [Copyright &y& Elsevier]
- Published
- 2006
- Full Text
- View/download PDF
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