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The physical properties of knotted and linked configurations in space have long been of interest to mathematicians. More recently, these properties have become significant to biologists, physicists, and engineers among others. Their depth of importance and breadth of application are now widely appreciated and valuable progress continues to be made each year.This volume presents several contributions from researchers using computers to study problems that would otherwise be intractable. While computations have long been used to analyze problems, formulate conjectures, and search for special structures in knot theory, increased computational power has made them a staple in many facets of the field. The volume also includes contributions concentrating on models researchers use to understand knotting, linking, and entanglement in physical and biological systems. Topics include properties of knot invariants, knot tabulation, studies of hyperbolic structures, knot energies, the exploration of spaces of knots, knotted umbilical cords, studies of knots in DNA and proteins, and the structure of tight knots. Together, the chapters explore four major themes: physical knot theory, knot theory in the life sciences, computational knot theory, and geometric knot theory.

Energy of knots is a theory that was introduced to create a “canonical configuration” of a knot — a beautiful knot which represents its knot type. This book introduces several kinds of energies, and studies the problem of whether or not there is a “canonical configuration” of a knot in each knot type. It also considers this problems in the context of conformal geometry. The energies presented in the book are defined geometrically. They measure the complexity of embeddings and have applications to physical knotting and unknotting through numerical experiments.

Almost since the advent of skein-theoretic invariants of knots and links (the Jones, HOMFLY, and Kauffman polynomials), the important role of categories of tangles in the connection between low-dimensional topology and quantum-group theory has been recognized. The rich categorical structures naturally arising from the considerations of cobordisms have suggested functorial views of topological field theory.This book begins with a detailed exposition of the key ideas in the discovery of monoidal categories of tangles as central objects of study in low-dimensional topology. The focus then turns to the deformation theory of monoidal categories and the related deformation theory of monoidal functors, which is a proper generalization of Gerstenhaber's deformation theory of associative algebras. These serve as the building blocks for a deformation theory of braided monoidal categories which gives rise to sequences of Vassiliev invariants of framed links, and clarify their interrelations.

One of the most significant unsolved problems in mathematics is the complete classification of knots. The main purpose of this book is to introduce the reader to the use of computer programming to obtain the table of knots. The author presents this problem as clearly and methodically as possible, starting from the very basics. Mathematical ideas and concepts are extensively discussed, and no advanced background is required.