Search

Simple Summary: In radiotherapy treatment, organs at risk and target volumes are contoured by the clinicians to prepare a dosimetry plan. In retrospective data, these structures are not often standardised to universal names across the patients plans, which is required to enable data mining and analysis. In this paper, a new method was proposed and evaluated to automatically standardise radiotherapy structures names using machine learning algorithms. The proposed approach was deployed over a dataset with 1613 patients collected from Liverpool & Macarthur Cancer Therapy Centres, New South Wales, Australia. It was concluded that machine learning techniques can standardise the dosimetry plan structures, taking into consideration the integration of multiple modalities representing each structure during the training process. In progressing the use of big data in health systems, standardised nomenclature is required to enable data pooling and analyses. In many radiotherapy planning systems and their data archives, target volumes (TV) and organ-at-risk (OAR) structure nomenclature has not been standardised. Machine learning (ML) has been utilised to standardise volumes nomenclature in retrospective datasets. However, only subsets of the structures have been targeted. Within this paper, we proposed a new approach for standardising all the structures nomenclature by using multi-modal artificial neural networks. A cohort consisting of 1613 breast cancer patients treated with radiotherapy was identified from Liverpool & Macarthur Cancer Therapy Centres, NSW, Australia. Four types of volume characteristics were generated to represent each target and OAR volume: textual features, geometric features, dosimetry features, and imaging data. Five datasets were created from the original cohort, the first four represented different subsets of volumes and the last one represented the whole list of volumes. For each dataset, 15 sets of combinations of features were generated to investigate the effect of using different characteristics on the standardisation performance. The best model reported 99.416% classification accuracy over the hold-out sample when used to standardise all the nomenclatures in a breast cancer radiotherapy plan into 21 classes. Our results showed that ML based automation methods can be used for standardising naming conventions in a radiotherapy plan taking into consideration the inclusion of multiple modalities to better represent each volume. [ABSTRACT FROM AUTHOR]

This paper presents the results of a research project which investigated permeability prediction for the Precipice Sandstone of the Surat Basin. Machine learning techniques were used for permeability estimation based on multiple wireline logs. This information improves the prediction of CO2 injectivity in this formation. Well logs and core data were collected from 5 boreholes in the Surat Basin, where extensive core data and complete sets of conventional well logs exist for the Precipice Sandstone. Four different machine learning (ML) techniques, including Random Forest (RF), Artificial neural network (ANN), Gradient Boosting Regressor (GBR), and Support Vector Regressor (SVR), were independently trained with a wide range of hyper-parameters to ensure that not only is the best model selected, but also the right combination of model parameters is selected. Cross-validation for 20 different combinations of the seven available input logs was used for this study. Based on the performances in the validation and blind testing phases, the ANN with all seven logs used as input was found to give the best performance in predicting permeability for the Precipice Sandstone with the coefficient of determination (R2) of about 0.93 and 0.87 for the training and blind data sets respectively. Multi-regression analysis also appears to be a successful approach to calculate reservoir permeability for the Precipice Sandstone. Models with a complete set of well logs can generate reservoir permeability with R2 of more than 90%. [ABSTRACT FROM AUTHOR]

Cocoa is an important commodity crop, not only to produce chocolate, one of the most complex products from the sensory perspective, but one that commonly grows in developing countries close to the tropics. This paper presents novel techniques applied using cover photography and a novel computer application (VitiCanopy) to assess the canopy architecture of cocoa trees in a commercial plantation in Queensland, Australia. From the cocoa trees monitored, pod samples were collected, fermented, dried, and ground to obtain the aroma profile per tree using gas chromatography. The canopy architecture data were used as inputs in an artificial neural network (ANN) algorithm, with the aroma profile, considering six main aromas, as targets. The ANN model rendered high accuracy (correlation coefficient (R) = 0.82; mean squared error (MSE) = 0.09) with no overfitting. The model was then applied to an aerial image of the whole cocoa field studied to produce canopy vigor, and aroma profile maps up to the tree-by-tree scale. The tool developed could significantly aid the canopy management practices in cocoa trees, which have a direct effect on cocoa quality. [ABSTRACT FROM AUTHOR]