9 results
Search Results
2. Taking eDNA underground: Factors affecting eDNA detection of subterranean fauna in groundwater.
- Author
-
van der Heyde, Mieke, White, Nicole E., Nevill, Paul, Austin, Andrew D., Stevens, Nicholas, Jones, Matt, and Guzik, Michelle T.
- Subjects
EFFECT of human beings on climate change ,GROUNDWATER ,GROUNDWATER pollution ,AQUATIC animals ,ENDANGERED species ,GROUNDWATER monitoring - Abstract
Stygofauna are aquatic fauna that have evolved to live underground. The impacts of anthropogenic climate change, extraction and pollution on groundwater pose major threats to groundwater health, prompting the need for efficient and reliable means to detect and monitor stygofaunal communities. Conventional survey techniques for these species rely on morphological identification and can be biased, labour‐intensive and often indeterminate to lower taxonomic levels. By contrast, environmental DNA (eDNA)‐based methods have the potential to dramatically improve on existing stygofaunal survey methods in a large range of habitats and for all life stages, reducing the need for the destructive manual collection of often critically endangered species or for specialized taxonomic expertise. We compared eDNA and haul‐net samples collected in 2020 and 2021 from 19 groundwater bores and a cave on Barrow Island, northwest Western Australia, and assessed how sampling factors influenced the quality of eDNA detection of stygofauna. The two detection methods were complementary; eDNA metabarcoding was able to detect soft‐bodied taxa and fish often missed by nets, but only detected seven of the nine stygofaunal crustacean orders identified from haul‐net specimens. Our results also indicated that eDNA metabarcoding could detect 54%–100% of stygofauna from shallow‐water samples and 82%–90% from sediment samples. However, there was significant variation in stygofaunal diversity between sample years and sampling types. The findings of this study demonstrate that haul‐net sampling has a tendency to underestimate stygofaunal diversity and that eDNA metabarcoding of groundwater can substantially improve the efficiency of stygofaunal surveys. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
3. Isotopic Indications of Late Pleistocene and Holocene Paleoenvironmental Changes at Boodie Cave Archaeological Site, Barrow Island, Western Australia.
- Author
-
Skippington, Jane, Manne, Tiina, Veth, Peter, Jambrina-Enríquez, Margarita, and Herrera-Herrera, Antonio V.
- Subjects
ARCHAEOLOGICAL excavations ,PLEISTOCENE Epoch ,PLEISTOCENE-Holocene boundary ,LAST Glacial Maximum ,STABLE isotope analysis ,PALEOSEISMOLOGY ,CARBON isotopes ,STABLE isotopes - Abstract
This paper presents the first application of mammal tooth enamel carbonate stable isotope analysis for the purpose of investigating late Pleistocene–early Holocene environmental change in an Australian archaeological context. Stable carbon (δ
13 C) and oxygen (δ18 O) isotope ratios were analyzed from archaeological and modern spectacled hare wallaby (Lagorchestes conspicillatus) and hill kangaroo (Osphranter robustus) tooth enamel carbonates from Boodie Cave on Barrow Island in Western Australia. δ18 O results track the dynamic paleoecological history at Boodie Cave including a clear shift towards increasing aridity preceding the onset of the Last Glacial Maximum and a period of increased humidity in the early to mid-Holocene. Enamel δ13 C reflects divergent species feeding ecology and may imply a long-term shift toward increasing diversity in vegetation structure. This study contributes new data to the carbonate-isotope record for Australian fauna and demonstrates the significant potential of stable isotope based ecological investigations for tracking paleoenvironment change to inter-strata resolution. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
4. Hyporthodus griseofasciatus (Perciformes: Epinephelidae), a new species of deep‐water grouper from the west coast of Australia.
- Author
-
Moore, Glenn I., Wakefield, Corey B., DiBattista, Joseph D., and Newman, Stephen J.
- Subjects
PERCIFORMES ,GROUPERS ,CYTOCHROME oxidase ,SPECIES ,GENETIC distance ,COASTS - Abstract
A new species of deep‐water epinephelid fish is described from the west coast of Australia based on 14 specimens, 99–595 mm standard length. Hyporthodus griseofasciatus sp. nov. is endemic to Western Australia from Barrow Island to Two Peoples Bay in depths of 76–470 m. It has a series of eight grey bands alternating with eight brown bands along the body and the soft dorsal, soft anal and caudal fin margins are pale cream to white. It is distinguished from its nearest congener, H. ergastularius, by the presence of a star‐like pattern of radiating lines on the head versus an overall brownish colour in the latter as well as significant differences in the quantitative analyses of 25 morphological characters. The two species have allopatric distributions on either side of the Australian continent. H. griseofasciatus is distinguished from H. octofasciatus by several grey bands being distinctly narrower than other grey bands (vs. all grey bands subequal in the latter) and the presence of broad white margins on the dorsal, caudal and anal fins (vs. narrow or absent in the latter). Some scale counts appear to also differ. Analyses of mitochondrial cytochrome oxidase subunit 1 sequences revealed reciprocally monophyletic clades with fixed differences and genetic distances typical of recently diverged species of fishes. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
5. Use of mixed-type data clustering algorithm for characterizing temporal and spatial distribution of biosecurity border detections of terrestrial non-indigenous species.
- Author
-
Kachigunda, Barbara, Mengersen, Kerrie, Perera, Devindri I., Coupland, Grey T., van der Merwe, Johann, and McKirdy, Simon
- Subjects
BIOSECURITY ,INTRODUCED species ,NATURE reserves ,CLUSTER analysis (Statistics) ,DATA mining - Abstract
Appropriate inspection protocols and mitigation strategies are a critical component of effective biosecurity measures, enabling implementation of sound management decisions. Statistical models to analyze biosecurity surveillance data are integral to this decision-making process. Our research focuses on analyzing border interception biosecurity data collected from a Class A Nature Reserve, Barrow Island, in Western Australia and the associated covariates describing both spatial and temporal interception patterns. A clustering analysis approach was adopted using a generalization of the popular k-means algorithm appropriate for mixed-type data. The analysis approach compared the efficiency of clustering using only the numerical data, then subsequently including covariates to the clustering. Based on numerical data only, three clusters gave an acceptable fit and provided information about the underlying data characteristics. Incorporation of covariates into the model suggested four distinct clusters dominated by physical location and type of detection. Clustering increases interpretability of complex models and is useful in data mining to highlight patterns to describe underlying processes in biosecurity and other research areas. Availability of more relevant data would greatly improve the model. Based on outcomes from our research we recommend broader use of cluster models in biosecurity data, with testing of these models on more datasets to validate the model choice and identify important explanatory variables. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
6. Power in Food on the Maritime Frontier: A Zooarchaeology of Enslaved Pearl Divers on Barrow Island, Western Australia.
- Author
-
Dooley, Tom, Manne, Tiina, and Paterson, Alistair
- Subjects
ZOOARCHAEOLOGY ,ISLANDS ,ORGANIZATION management ,RESOURCE management ,SLAVERY ,INDIGENOUS Australians - Abstract
Use of Indigenous divers on nineteenth-century northwest Australian pearling luggers gave rise to a transregional apparatus of coercion, physical mistreatment, and arguably, slavery. Where accounts of conditions experienced by divers are limited to the documents of contemporary colonial men, our contribution explores a rare archaeological perspective. Zooarchaeological and taphonomic analysis of the Bandicoot Bay campsite, Barrow Island, evokes an exploitative labor relationship inherited from a wider colonial process yet actively renegotiated by its participants through subsistence practices. The operation's pearlers selected a camp that advantaged concerns for labor organization and resource management while their divers seized opportunities for self-directed subsistence. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
7. Conspicuously concealed: revision of the arid clade of the Gehyra variegata (Gekkonidae) group in Western Australia using an integrative molecular and morphological approach, with the description of five cryptic species.
- Author
-
Kealley, Luke, Doughty, Paul, Pepper, Mitzy, Keogh, J. Scott, Hillyer, Mia, and Huey, Joel
- Subjects
GECKOS ,ENDEMIC animals ,ARID regions ,GEOGRAPHIC boundaries ,SOUTHERN root-knot nematode ,SPECIES ,SEA level - Abstract
The methods used to detect and describe morphologically cryptic species have advanced in recent years, owing to the integrative nature of molecular and morphological techniques required to elucidate them. Here we integrate recent phylogenomic work that sequenced many genes but few individuals, with new data from mtDNA and morphology from hundreds of gecko specimens of the Gehyra variegata group from the Australian arid zone. To better understand morphological and geographical boundaries among cryptic forms, we generated new sequences from 656 Gehyra individuals, largely assigned to G. variegata group members over a wide area in Western Australia, with especially dense sampling in the Pilbara region, and combined them with 566 Gehyra sequences from GenBank, resulting in a dataset of 1,222 specimens. Results indicated the existence of several cryptic species, from new species with diagnostic morphological characters, to cases when there were no useful characters to discriminate among genetically distinctive species. In addition, the cryptic species often showed counter-intuitive distributions, including broad sympatry among some forms and short range endemism in other cases. Two new species were on long branches in the phylogram and restricted to the northern Pilbara region: most records of the moderately sized G. incognita sp. nov. are near the coast with isolated inland records, whereas the small-bodied saxicoline G. unguiculata sp. nov. is only known from a small area in the extreme north of the Pilbara. Three new species were on shorter branches in the phylogram and allied to G. montium. The moderately sized G. crypta sp. nov. occurs in the western and southern Pilbara and extends south through the Murchison region; this species was distinctive genetically, but with wide overlap of characters with its sister species, G. montium. Accordingly, we provide a table of diagnostic nucleotides for this species as well as for all other species treated here. Two small-bodied species occur in isolated coastal regions: G. capensis sp. nov. is restricted to the North West Cape and G. ocellata sp. nov. occurs on Barrow Island and other neighbouring islands. The latter species showed evidence of introgression with the mtDNA of G. crypta sp. nov., possibly due to recent connectivity with the mainland owing to fluctuating sea levels. However, G. ocellata sp. nov. was more closely related to G. capensis sp. nov. in the phylogenomic data and in morphology. Our study illustrates the benefits of combining phylogenomic data with extensive screens of mtDNA to identify large numbers of individuals to the correct cryptic species. This approach was able to provide sufficient samples with which to assess morphological variation. Furthermore, determination of geographic distributions of the new cryptic species should greatly assist with identification in the field, demonstrating the utility of sampling large numbers of specimens across wide areas. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
8. A method for designing complex biosecurity surveillance systems: detecting non-indigenous species of invertebrates on Barrow Island.
- Author
-
Whittle, Peter J. L., Stoklosa, Richard, Barrett, Susan, Jarrad, Frith C., Majer, Jonathan D., Martin, P. A. J., Mengersen, Kerrie, and Burgman, Mark
- Subjects
BIOSECURITY ,KNOWLEDGE gap theory ,RISK assessment ,PROJECT management ,ANIMAL species - Abstract
Aim We developed a new method to design objective, risk-based surveillance systems for non-indigenous species of invertebrates, vertebrates and plants, which might be introduced to a natural area through an industrial project; here, we provide the invertebrate case study. The method addresses issues common to complex surveillance design problems: a statistical standard (e.g. power); information gaps; multiple targets of unclear identity; a large surveillance area of heterogeneous risk of invasion; integrating multiple sources of surveillance data; optimizing for cost. Location Barrow Island, Western Australia. Methods We mapped the surveillance area for risk to target surveillance activities. An expert group identified a set of exemplar species and identified and characterized a set of detection methods for each, such that all potential invaders would be detected. We devised multi-element surveillance systems to detect each exemplar to the design power (0.8), then integrated them to a single system that was optimized for cost. Results The surveillance system was deployed on the island to specification over 1 year, then reviewed for redesign in a second period. Main conclusions The new method provided practical, risk-based surveillance system designs that met application requirements and overcame complex issues common to many surveillance applications. A review of experiences from surveillance in the first year led to practical improvements and design efficiencies. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
9. Towards monitoring rock-wallabies on Barrow Island, Western Australia.
- Author
-
BURBIDGE, ANDREW A.
- Subjects
ROCK wallabies ,TRAPPING ,ENVIRONMENTAL monitoring ,WILDLIFE conservation - Abstract
The Black-flanked Rock-wallaby Petrogale lateralis lateralis is difficult to trap consistently on Barrow Island because of the prevalence of Common Brushtail Possums Trichosurus vulpecula and Golden Bandicoots Isoodon auratus in and near its shelter habitat. Three possible methods of monitoring were trialed: daytime searching, spotlighting and dusk watching. Daytime searching produced the best results, although numbers seen were low and varied between searches. In November 2004, 37 rock-wallabies were sighted during the first search of each 'site' and in August 2005, 43 were sighted. Repeated counts will be needed to demonstrate whether daytime searching could be used as a standard monitoring method. No estimate of the total population was possible, but it is clearly very small, consistent with previous research showing unprecedented low levels of genetic variation. [ABSTRACT FROM AUTHOR]
- Published
- 2008
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.